| Definition | Myxococcus xanthus DK 1622 chromosome, complete genome. |
|---|---|
| Accession | NC_008095 |
| Length | 9,139,763 |
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The map label for this gene is gspD [H]
Identifier: 108757430
GI number: 108757430
Start: 2923054
End: 2925645
Strand: Reverse
Name: gspD [H]
Synonym: MXAN_2514
Alternate gene names: 108757430
Gene position: 2925645-2923054 (Counterclockwise)
Preceding gene: 108758239
Following gene: 108763191
Centisome position: 32.01
GC content: 68.94
Gene sequence:
>2592_bases ATGAAGACGCTCCCGTCCTGGATGCTCTGCCTGTGCCTCGCGCTCGCCGTTCCCGCGCAGGCCCAGCGCCGCTCACCGCC CTCTGGTTCCGCCGGAGAGCGGAAGATTTCCCCGCAAGGCCCTGGCGCTACCAGCGCTGGTGACGCCAACGCGGGTCCCC GCCGCACGCCGACGTGCGAGGAGGCCCGCCGCAATGCCCGTTACGGCATCTACTTCGACAAGGTGGAGATCGAGAAGCTG GTCCAGACGGTCGCGGACGCCACCTGCCGCACCTTCATCCTGCCGGAGAACGTGCGCGGGAAGATCTCCATCATCGGCCC GGAGAATGGCCGGGTGGAGGTCAACGCGGACGCCTTCTACTCCGCCTTCCTCGCCGCGCTCGACGCCAACGGGCTCGCCG CCTACCAGTACGGCCGGTTCATGAAGATCGTCGACAAGCGCTCGGCGAAGCAGAACCCCATCCCGACCATCGTCGAGGAG GGTGAGCCGTACACCACCAACGAGCAGATGGTGACCAAGCTGTTCCGCGTGCAGAACGTGGAAGTGGAGCCGCTGCGCGG CGTGCTCCAGCAGCTGGTGTCCAAGGACGGCGACACGATTCCGTATCCGCCCGACACCATCATCATCAACGACGTGGGCT CCAACATCCACCGCCTGGAGCGCATCATCCACCAGCTGGACACGCGCGCCGCCAGCGACGAGATGCGCATCATCCAGGTG CAGTACGCCTCCGCGCAGGACGTGGCCAACACGGTGCAGCGCCTCTTCGAGGCCAAGGGCGCCCGCCCCGGCCAGCCCGC GGCCGCCGGGCGCAATGTGCCCCCCGCCGCGGCACAGGCCACGCCTCAAGCCGGCCAGGGCCAGGAAGGCGCCACCGGCG GTCCGGTGACGCTGTCGCAGATCATCCCAGACGAGCGCACCAACAAGCTCATCATCGTCGCCAGCCCCGCGGCCTTCGAG CGCATCCAGGACATCGTCGGGCAGATTGACATCCCCACCAGCGGCGGCGGACGCATCAACGTCTACTACCTGGAGAACGC CAACGCGGAGGAGCTGGCCAGCACGCTCCAGTCGCTGGCCCAGGGCACCGGCAACGCGCCCCGTGGCCGCACCCCGGTGC CGGCCCGTCCGCCCGGCGCCCCTGGCGGCCCCACCACGACGCAGGCGGCGGAGCTGTTCAGCGGCGAGGTGAAGATTTCG GCCGACAAGGGCAGCAACTCGCTGGTCATCGTCGCCAGCTCGGCGGACTACAAGAACATCGTCCAGGTCATCCAGCAGCT CGACAAGCCGCGCCGCCAGGTGTTCGTGGAGGCCGTCATCATGGAGGTCAACCTGGACCGCAACGCGCGGCTCGGCATGA ACCTCCACAGCGGCTTCAGCCTGAGCACGTCGAACGGCGATCAGGTGCCCGGCCTCATCGGCACCAACACCTCCGGCCAG GGCCTGCCGCCGTCCCTGTCGCTCACCAGCCTGGCGTCCTACGGCGGCTTCCTCGCCGGCATCCAGGGCCCCGTCATCCC CGCGCTGGAGAAGCTGGGCATCCCGGCCTTTGGCGTGGTGCTGCACGCCATGCAGCAGAGCTCGGATGTGAACGTGCTCT CCACGCCGCACATCCTCACCAGCGACAACGAGGAGGCGGAAATCACGGTGGGACAGAATGTGCCCTTCCAGTCCGGCTTC AACCCGACCTCGCTGGGCTCGCTCGGGGCCGGCGTGGGCGGCGGCGCGGGAGCACTGGGCGGCGGCCTGCTCGGCGGCCT GGGTGGCCTGGGTTCGCTCTACGCCCCCATCACCCGTCAGAACGTGGAGTTGAAGCTGACGGTGAAGCCGCAGATCAACG AGAGCGACTACATCCGCCTGGTCATCAACCAACAGACGGAGGAGATCGCCTCCACCGACCCGGTGCTCGGCCCCACCACG TCCCGCCGCAGCGCGAAGACGACGGTCATCGCGCGGGACCAGGAGACGCTGGTGATTGGCGGCATCATGCAGGACCGCAC GCTGGAGAGCGTGTCCAAGGTGCCGCTGCTGGGTGACATCCCGCTGCTGGGCCACCTGTTCCGCGACACCACGCGCCGCA AGACGAAGACGAACCTGCTCCTCTTCCTGACGCCCTACATCATCCGGGGGCCAGAGGACTTCCGCGTCATCTTCGAGCGC AAGATGAAGGAGCGGCAGCAGTTCGTGGAGCAGTTCTACGGCCAGGTGCCCGGCTACGATGTGGCGGTGGACTTCAGCCG CAAGCCCGGTCCGCTGTCGCGCATGGGCCAGAAGGTGACGCAGGAGGAGCAGCGCGCGGAGAACGGCGGTCCGGGCCTTT CCGGCGAGCGCATCATCACCCCGGCCCCGCCCCCGGCCAGCAGCCCGGGAGCCGTGCCCTCCACGCAGCGGCAGGCGCCG GCCTCCCCGGAGGATGAAGGTGGACCGGCGGTGCGGGAAGGCATGCCGCCTCCAGATGGTTCGGAAGAACCAGTGCCCGC GCCCGCCCCGCAGAACTTCGAGCAGCCCCCGCCCGAGGCCATCCAGGTCCCCGAGGCAGGAGACGCCGAACGCCTGCGCA TCCAGCACATCGAGCCGGGGCCGAGGGAGTAG
Upstream 100 bases:
>100_bases AAAGACGCAGCCCGCATCGAGATCGAGATCGAGCGCAACGGTGCGCCGATCCGCAAGTCGTACAACGTCCGTTAATCACC TCCGCAGCGCCCGCTCCTCC
Downstream 100 bases:
>100_bases ACGCCATGAACCTGACCGCCGACCCCGCCCTCACCAGCGCCGCCACCGGAGGCACGGTTTCCCCGCGCAACGACGCCACG CAGCTCGTGGCACACGGACA
Product: general secretion pathway protein D
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 863; Mature: 863
Protein sequence:
>863_residues MKTLPSWMLCLCLALAVPAQAQRRSPPSGSAGERKISPQGPGATSAGDANAGPRRTPTCEEARRNARYGIYFDKVEIEKL VQTVADATCRTFILPENVRGKISIIGPENGRVEVNADAFYSAFLAALDANGLAAYQYGRFMKIVDKRSAKQNPIPTIVEE GEPYTTNEQMVTKLFRVQNVEVEPLRGVLQQLVSKDGDTIPYPPDTIIINDVGSNIHRLERIIHQLDTRAASDEMRIIQV QYASAQDVANTVQRLFEAKGARPGQPAAAGRNVPPAAAQATPQAGQGQEGATGGPVTLSQIIPDERTNKLIIVASPAAFE RIQDIVGQIDIPTSGGGRINVYYLENANAEELASTLQSLAQGTGNAPRGRTPVPARPPGAPGGPTTTQAAELFSGEVKIS ADKGSNSLVIVASSADYKNIVQVIQQLDKPRRQVFVEAVIMEVNLDRNARLGMNLHSGFSLSTSNGDQVPGLIGTNTSGQ GLPPSLSLTSLASYGGFLAGIQGPVIPALEKLGIPAFGVVLHAMQQSSDVNVLSTPHILTSDNEEAEITVGQNVPFQSGF NPTSLGSLGAGVGGGAGALGGGLLGGLGGLGSLYAPITRQNVELKLTVKPQINESDYIRLVINQQTEEIASTDPVLGPTT SRRSAKTTVIARDQETLVIGGIMQDRTLESVSKVPLLGDIPLLGHLFRDTTRRKTKTNLLLFLTPYIIRGPEDFRVIFER KMKERQQFVEQFYGQVPGYDVAVDFSRKPGPLSRMGQKVTQEEQRAENGGPGLSGERIITPAPPPASSPGAVPSTQRQAP ASPEDEGGPAVREGMPPPDGSEEPVPAPAPQNFEQPPPEAIQVPEAGDAERLRIQHIEPGPRE
Sequences:
>Translated_863_residues MKTLPSWMLCLCLALAVPAQAQRRSPPSGSAGERKISPQGPGATSAGDANAGPRRTPTCEEARRNARYGIYFDKVEIEKL VQTVADATCRTFILPENVRGKISIIGPENGRVEVNADAFYSAFLAALDANGLAAYQYGRFMKIVDKRSAKQNPIPTIVEE GEPYTTNEQMVTKLFRVQNVEVEPLRGVLQQLVSKDGDTIPYPPDTIIINDVGSNIHRLERIIHQLDTRAASDEMRIIQV QYASAQDVANTVQRLFEAKGARPGQPAAAGRNVPPAAAQATPQAGQGQEGATGGPVTLSQIIPDERTNKLIIVASPAAFE RIQDIVGQIDIPTSGGGRINVYYLENANAEELASTLQSLAQGTGNAPRGRTPVPARPPGAPGGPTTTQAAELFSGEVKIS ADKGSNSLVIVASSADYKNIVQVIQQLDKPRRQVFVEAVIMEVNLDRNARLGMNLHSGFSLSTSNGDQVPGLIGTNTSGQ GLPPSLSLTSLASYGGFLAGIQGPVIPALEKLGIPAFGVVLHAMQQSSDVNVLSTPHILTSDNEEAEITVGQNVPFQSGF NPTSLGSLGAGVGGGAGALGGGLLGGLGGLGSLYAPITRQNVELKLTVKPQINESDYIRLVINQQTEEIASTDPVLGPTT SRRSAKTTVIARDQETLVIGGIMQDRTLESVSKVPLLGDIPLLGHLFRDTTRRKTKTNLLLFLTPYIIRGPEDFRVIFER KMKERQQFVEQFYGQVPGYDVAVDFSRKPGPLSRMGQKVTQEEQRAENGGPGLSGERIITPAPPPASSPGAVPSTQRQAP ASPEDEGGPAVREGMPPPDGSEEPVPAPAPQNFEQPPPEAIQVPEAGDAERLRIQHIEPGPRE >Mature_863_residues MKTLPSWMLCLCLALAVPAQAQRRSPPSGSAGERKISPQGPGATSAGDANAGPRRTPTCEEARRNARYGIYFDKVEIEKL VQTVADATCRTFILPENVRGKISIIGPENGRVEVNADAFYSAFLAALDANGLAAYQYGRFMKIVDKRSAKQNPIPTIVEE GEPYTTNEQMVTKLFRVQNVEVEPLRGVLQQLVSKDGDTIPYPPDTIIINDVGSNIHRLERIIHQLDTRAASDEMRIIQV QYASAQDVANTVQRLFEAKGARPGQPAAAGRNVPPAAAQATPQAGQGQEGATGGPVTLSQIIPDERTNKLIIVASPAAFE RIQDIVGQIDIPTSGGGRINVYYLENANAEELASTLQSLAQGTGNAPRGRTPVPARPPGAPGGPTTTQAAELFSGEVKIS ADKGSNSLVIVASSADYKNIVQVIQQLDKPRRQVFVEAVIMEVNLDRNARLGMNLHSGFSLSTSNGDQVPGLIGTNTSGQ GLPPSLSLTSLASYGGFLAGIQGPVIPALEKLGIPAFGVVLHAMQQSSDVNVLSTPHILTSDNEEAEITVGQNVPFQSGF NPTSLGSLGAGVGGGAGALGGGLLGGLGGLGSLYAPITRQNVELKLTVKPQINESDYIRLVINQQTEEIASTDPVLGPTT SRRSAKTTVIARDQETLVIGGIMQDRTLESVSKVPLLGDIPLLGHLFRDTTRRKTKTNLLLFLTPYIIRGPEDFRVIFER KMKERQQFVEQFYGQVPGYDVAVDFSRKPGPLSRMGQKVTQEEQRAENGGPGLSGERIITPAPPPASSPGAVPSTQRQAP ASPEDEGGPAVREGMPPPDGSEEPVPAPAPQNFEQPPPEAIQVPEAGDAERLRIQHIEPGPRE
Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]
COG id: COG1450
COG function: function code NU; Type II secretory pathway, component PulD
Gene ontology:
Cell location: Cell outer membrane (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GSP D family [H]
Homologues:
Organism=Escherichia coli, GI87082242, Length=688, Percent_Identity=28.343023255814, Blast_Score=238, Evalue=1e-63, Organism=Escherichia coli, GI1789793, Length=330, Percent_Identity=24.2424242424242, Blast_Score=75, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001775 - InterPro: IPR005644 - InterPro: IPR004846 - InterPro: IPR013356 - InterPro: IPR004845 [H]
Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]
EC number: NA
Molecular weight: Translated: 91845; Mature: 91845
Theoretical pI: Translated: 5.43; Mature: 5.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTLPSWMLCLCLALAVPAQAQRRSPPSGSAGERKISPQGPGATSAGDANAGPRRTPTCE CCCCHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH EARRNARYGIYFDKVEIEKLVQTVADATCRTFILPENVRGKISIIGPENGRVEVNADAFY HHHCCCCCCEEECHHHHHHHHHHHHHHHHEEEECCCCCCCEEEEECCCCCEEEECHHHHH SAFLAALDANGLAAYQYGRFMKIVDKRSAKQNPIPTIVEEGEPYTTNEQMVTKLFRVQNV HHHHHHHCCCCEEHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHCCC EVEPLRGVLQQLVSKDGDTIPYPPDTIIINDVGSNIHRLERIIHQLDTRAASDEMRIIQV CHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEE QYASAQDVANTVQRLFEAKGARPGQPAAAGRNVPPAAAQATPQAGQGQEGATGGPVTLSQ ECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCEEHHH IIPDERTNKLIIVASPAAFERIQDIVGQIDIPTSGGGRINVYYLENANAEELASTLQSLA HCCCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHH QGTGNAPRGRTPVPARPPGAPGGPTTTQAAELFSGEVKISADKGSNSLVIVASSADYKNI HCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCEEEEEECCCCHHHH VQVIQQLDKPRRQVFVEAVIMEVNLDRNARLGMNLHSGFSLSTSNGDQVPGLIGTNTSGQ HHHHHHHCHHHHHHHHHHHHEEECCCCCCEECCEECCCEEEECCCCCCCCCEEECCCCCC GLPPSLSLTSLASYGGFLAGIQGPVIPALEKLGIPAFGVVLHAMQQSSDVNVLSTPHILT CCCCCCHHHHHHHHCCHHHCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCEEEECCEEEE SDNEEAEITVGQNVPFQSGFNPTSLGSLGAGVGGGAGALGGGLLGGLGGLGSLYAPITRQ CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCC NVELKLTVKPQINESDYIRLVINQQTEEIASTDPVLGPTTSRRSAKTTVIARDQETLVIG CEEEEEEECCCCCCCCEEEEEECCCHHHHHCCCCCCCCCCCCCCCCEEEEECCCCEEEEE GIMQDRTLESVSKVPLLGDIPLLGHLFRDTTRRKTKTNLLLFLTPYIIRGPEDFRVIFER CCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCHHHCCCHHHHHHHHH KMKERQQFVEQFYGQVPGYDVAVDFSRKPGPLSRMGQKVTQEEQRAENGGPGLSGERIIT HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEC PAPPPASSPGAVPSTQRQAPASPEDEGGPAVREGMPPPDGSEEPVPAPAPQNFEQPPPEA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHH IQVPEAGDAERLRIQHIEPGPRE EECCCCCCCCCEEEEECCCCCCC >Mature Secondary Structure MKTLPSWMLCLCLALAVPAQAQRRSPPSGSAGERKISPQGPGATSAGDANAGPRRTPTCE CCCCHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH EARRNARYGIYFDKVEIEKLVQTVADATCRTFILPENVRGKISIIGPENGRVEVNADAFY HHHCCCCCCEEECHHHHHHHHHHHHHHHHEEEECCCCCCCEEEEECCCCCEEEECHHHHH SAFLAALDANGLAAYQYGRFMKIVDKRSAKQNPIPTIVEEGEPYTTNEQMVTKLFRVQNV HHHHHHHCCCCEEHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHCCC EVEPLRGVLQQLVSKDGDTIPYPPDTIIINDVGSNIHRLERIIHQLDTRAASDEMRIIQV CHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEE QYASAQDVANTVQRLFEAKGARPGQPAAAGRNVPPAAAQATPQAGQGQEGATGGPVTLSQ ECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCEEHHH IIPDERTNKLIIVASPAAFERIQDIVGQIDIPTSGGGRINVYYLENANAEELASTLQSLA HCCCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHH QGTGNAPRGRTPVPARPPGAPGGPTTTQAAELFSGEVKISADKGSNSLVIVASSADYKNI HCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCEEEEEECCCCHHHH VQVIQQLDKPRRQVFVEAVIMEVNLDRNARLGMNLHSGFSLSTSNGDQVPGLIGTNTSGQ HHHHHHHCHHHHHHHHHHHHEEECCCCCCEECCEECCCEEEECCCCCCCCCEEECCCCCC GLPPSLSLTSLASYGGFLAGIQGPVIPALEKLGIPAFGVVLHAMQQSSDVNVLSTPHILT CCCCCCHHHHHHHHCCHHHCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCEEEECCEEEE SDNEEAEITVGQNVPFQSGFNPTSLGSLGAGVGGGAGALGGGLLGGLGGLGSLYAPITRQ CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCC NVELKLTVKPQINESDYIRLVINQQTEEIASTDPVLGPTTSRRSAKTTVIARDQETLVIG CEEEEEEECCCCCCCCEEEEEECCCHHHHHCCCCCCCCCCCCCCCCEEEEECCCCEEEEE GIMQDRTLESVSKVPLLGDIPLLGHLFRDTTRRKTKTNLLLFLTPYIIRGPEDFRVIFER CCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCHHHCCCHHHHHHHHH KMKERQQFVEQFYGQVPGYDVAVDFSRKPGPLSRMGQKVTQEEQRAENGGPGLSGERIIT HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEC PAPPPASSPGAVPSTQRQAPASPEDEGGPAVREGMPPPDGSEEPVPAPAPQNFEQPPPEA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHH IQVPEAGDAERLRIQHIEPGPRE EECCCCCCCCCEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1640836 [H]