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The map label for this gene is rffA [C]

Identifier: 108756904

GI number: 108756904

Start: 3783331

End: 3784500

Strand: Direct

Name: rffA [C]

Synonym: MXAN_3232

Alternate gene names: 108756904

Gene position: 3783331-3784500 (Clockwise)

Preceding gene: 108761491

Following gene: 108758466

Centisome position: 41.39

GC content: 69.57

Gene sequence:

>1170_bases
ATGAAGCACTCTGGCCGGCTGTTCGTGCCGTCACTGCCCACGCTGTGGCCGCACATGCTGCTGTCTCGGCCGAAGCCCGG
CGAGCTGCCGCCGTTCTCCTCGCCCAACGTCCGCTACTTCTACTTCGCCCGCAATGCCATCTGGCTGACGGTGAAGATGC
TGGGGCTGGATTCGGGCGAGGTGTTGATGCCCGCCTACCACCACGGCGTGGAGGTCGAGGCACTGGTGGACGCCGGCGCC
ACGCCGCGCTTCTACCGCGTGGGCAGCCGCTGGGACGTGGACCTGGACGACGTGGCCCGGCGCATCGGCCCGAAGACGCG
GGCCCTGTACCTGACGCACTACGCGGGCTTCCCGGGCCCCGTCGCGGAGATGCGCAAGCTGGCGGACCAGCACGGGCTCA
TCCTCATCGAGGACTGTGCGCTGTCGTTGCTGTCCTCCGACGGCGCGGTGCCCCTGGGGACGACGGGAGACGTGGGCATT
TTCTGCCTCTACAAGACGCTTCCGGTTCCCAACGGGGGCGCGCTGGTCGTCAACGGCCCGCGCCAGTACAGCCTTCCGGA
GCCGCCCGCGCCGCCGTCCGTGTCCACCTTCAGCCACACGGTGTCCGCGCTGCTGCAGAACCTGGAGTTGCGCGGCGGCC
TGGCCGGCCGGGCCCTGCGCAGCGCCGTGCGCACGTTGGGGCATGGCACCGTGAAGGCGGCCAACATCGAGCGCGTGGCC
ACGGGGACGCAGCACTTCGACCGCAAGCATGTGGACCTGGGCATGAGCCCGCTGACGAAGCGGATTGCCCAGGCCCAGGA
CCTGGAATCCATCGTCGAGCAGCGGCGCCGCAACTACTTCTTCCTGCTGGGCCGGCTGCGCGACATCTCCGCGCCGCTGT
TCAACCAGTTGCCGCCGGGCGCGTGCCCGCTGTTCTACCCGCTGGTGGTGCAGGACAAGGCGGAGGTGCTGGCGCGGCTG
CGCGTGCAGGGCATCGACGCCATCGACTTCTGGAAGCGCTTTCACCCGGCCTGTGACGCATCGGCCTTCCCGGAGGTGGC
GCAGCTACGTCGCTCCATCGTGGAGATTCCGTGCCACCAGGACCTGACGCCGGAGGTCATGGCGGACGTGGCGCAGGCGG
TGCGCGAGGCGGTGAAGTCGGACCATCGGTCGAAGAAGCGCGCGGGGTGA

Upstream 100 bases:

>100_bases
GGCTCTACGTGTTCAATGACTCCCCCTTCGGCCAGGCGCTGTGTGCGGCCAAGTTCCGGTGGGGGCCCGCGGTGAAAGAG
GTGGTGTCGCGATGGAGACG

Downstream 100 bases:

>100_bases
AGCTCATTCGGGGAACAGGGGAGGGGCGGCTGCCCCTTCGGGAGGACGGGCGTTGATTCGGGTGGATGAGCTGTCGCAGG
GAGCGTGGGCCGCGCACCCG

Product: aminotransferase

Products: TDP-D-fucosamine; 2-oxoglutarate [C]

Alternate protein names: Glutamine-Scyllo-Inositol Transaminase; TDP-4-Oxo-6-Deoxy-D-Glucose Transaminase; Aminotransferase; DegT/DnrJ/EryC1/StrS Aminotransferase Family Protein; Perosamine Synthetase; Pleiotropic Regulatory Protein; SpsC1 Protein; Aminotransferase Family DegT/DnrJ/EryC1/StrS; Lipopolysaccharide Biosynthesis Protein RffA; Glutamate-GDP-4-Keto-6-Deoxy-D-Mannose Aminotransferase; Aminotransferase Degt/Dnrj/Eryc1/Strs Family; Sugar 4-Aminotransferase; SpsC-Like DegT/DnrJ/EryC1/StrS Family Aminotransferase; DegT/DnrJ/EryC1/StrS Aminotransferase Family; Polysaccharide Biosynthesis Protein; Pleiotropic Regulatory Protein DegT; Perosamine Synthase

Number of amino acids: Translated: 389; Mature: 389

Protein sequence:

>389_residues
MKHSGRLFVPSLPTLWPHMLLSRPKPGELPPFSSPNVRYFYFARNAIWLTVKMLGLDSGEVLMPAYHHGVEVEALVDAGA
TPRFYRVGSRWDVDLDDVARRIGPKTRALYLTHYAGFPGPVAEMRKLADQHGLILIEDCALSLLSSDGAVPLGTTGDVGI
FCLYKTLPVPNGGALVVNGPRQYSLPEPPAPPSVSTFSHTVSALLQNLELRGGLAGRALRSAVRTLGHGTVKAANIERVA
TGTQHFDRKHVDLGMSPLTKRIAQAQDLESIVEQRRRNYFFLLGRLRDISAPLFNQLPPGACPLFYPLVVQDKAEVLARL
RVQGIDAIDFWKRFHPACDASAFPEVAQLRRSIVEIPCHQDLTPEVMADVAQAVREAVKSDHRSKKRAG

Sequences:

>Translated_389_residues
MKHSGRLFVPSLPTLWPHMLLSRPKPGELPPFSSPNVRYFYFARNAIWLTVKMLGLDSGEVLMPAYHHGVEVEALVDAGA
TPRFYRVGSRWDVDLDDVARRIGPKTRALYLTHYAGFPGPVAEMRKLADQHGLILIEDCALSLLSSDGAVPLGTTGDVGI
FCLYKTLPVPNGGALVVNGPRQYSLPEPPAPPSVSTFSHTVSALLQNLELRGGLAGRALRSAVRTLGHGTVKAANIERVA
TGTQHFDRKHVDLGMSPLTKRIAQAQDLESIVEQRRRNYFFLLGRLRDISAPLFNQLPPGACPLFYPLVVQDKAEVLARL
RVQGIDAIDFWKRFHPACDASAFPEVAQLRRSIVEIPCHQDLTPEVMADVAQAVREAVKSDHRSKKRAG
>Mature_389_residues
MKHSGRLFVPSLPTLWPHMLLSRPKPGELPPFSSPNVRYFYFARNAIWLTVKMLGLDSGEVLMPAYHHGVEVEALVDAGA
TPRFYRVGSRWDVDLDDVARRIGPKTRALYLTHYAGFPGPVAEMRKLADQHGLILIEDCALSLLSSDGAVPLGTTGDVGI
FCLYKTLPVPNGGALVVNGPRQYSLPEPPAPPSVSTFSHTVSALLQNLELRGGLAGRALRSAVRTLGHGTVKAANIERVA
TGTQHFDRKHVDLGMSPLTKRIAQAQDLESIVEQRRRNYFFLLGRLRDISAPLFNQLPPGACPLFYPLVVQDKAEVLARL
RVQGIDAIDFWKRFHPACDASAFPEVAQLRRSIVEIPCHQDLTPEVMADVAQAVREAVKSDHRSKKRAG

Specific function: Involved In Eca Elongation. [C]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42852; Mature: 42852

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHSGRLFVPSLPTLWPHMLLSRPKPGELPPFSSPNVRYFYFARNAIWLTVKMLGLDSGE
CCCCCCEECCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCEEEEEEEEEECCCCC
VLMPAYHHGVEVEALVDAGATPRFYRVGSRWDVDLDDVARRIGPKTRALYLTHYAGFPGP
EECCHHHCCCEEEEEECCCCCCCEEECCCCCCCCHHHHHHHHCCCCEEEEEEECCCCCCH
VAEMRKLADQHGLILIEDCALSLLSSDGAVPLGTTGDVGIFCLYKTLPVPNGGALVVNGP
HHHHHHHHHHCCEEEEHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEECC
RQYSLPEPPAPPSVSTFSHTVSALLQNLELRGGLAGRALRSAVRTLGHGTVKAANIERVA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEECCHHHHH
TGTQHFDRKHVDLGMSPLTKRIAQAQDLESIVEQRRRNYFFLLGRLRDISAPLFNQLPPG
CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHCCCHHHHCCCCC
ACPLFYPLVVQDKAEVLARLRVQGIDAIDFWKRFHPACDASAFPEVAQLRRSIVEIPCHQ
CCCCEEHHHCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCC
DLTPEVMADVAQAVREAVKSDHRSKKRAG
CCCHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKHSGRLFVPSLPTLWPHMLLSRPKPGELPPFSSPNVRYFYFARNAIWLTVKMLGLDSGE
CCCCCCEECCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCEEEEEEEEEECCCCC
VLMPAYHHGVEVEALVDAGATPRFYRVGSRWDVDLDDVARRIGPKTRALYLTHYAGFPGP
EECCHHHCCCEEEEEECCCCCCCEEECCCCCCCCHHHHHHHHCCCCEEEEEEECCCCCCH
VAEMRKLADQHGLILIEDCALSLLSSDGAVPLGTTGDVGIFCLYKTLPVPNGGALVVNGP
HHHHHHHHHHCCEEEEHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEECC
RQYSLPEPPAPPSVSTFSHTVSALLQNLELRGGLAGRALRSAVRTLGHGTVKAANIERVA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEECCHHHHH
TGTQHFDRKHVDLGMSPLTKRIAQAQDLESIVEQRRRNYFFLLGRLRDISAPLFNQLPPG
CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHCCCHHHHCCCCC
ACPLFYPLVVQDKAEVLARLRVQGIDAIDFWKRFHPACDASAFPEVAQLRRSIVEIPCHQ
CCCCEEHHHCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCC
DLTPEVMADVAQAVREAVKSDHRSKKRAG
CCCHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: dTDP-4-dehydro-6-deoxy-D-glucose; L-glutamate [C]

Specific reaction: dTDP-4-dehydro-6-deoxy-D-glucose + L-glutamate = TDP-D-fucosamine + 2-oxoglutarate [C]

General reaction: Carbon-Oxygen Lyases; Hydro-Lyases [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA