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The map label for this gene is rtcB [C]

Identifier: 108756827

GI number: 108756827

Start: 73389

End: 74741

Strand: Reverse

Name: rtcB [C]

Synonym: MXAN_0064

Alternate gene names: 108756827

Gene position: 74741-73389 (Counterclockwise)

Preceding gene: 108763407

Following gene: 108760524

Centisome position: 0.82

GC content: 67.85

Gene sequence:

>1353_bases
ATGAGTTGGAAGCAGCGGCTGGAGAAGGTCTCAGAGGGCCATTACGTCCTGGCGAAGACCAAGAGCATGAAGGTCGATGC
GGACCTGTTCCTGTCCGACAAGTTGCTGTGGGGGGAGGGCCCCGAGCAACCTGGACTGGAGGACTCTGTCTTTGACCAGG
TGGTGAATGCGGCATCCTTCCCCGGGGTCACCCGCGTGGCTGTCACACCCGACTGTCACCTGGGCTACGGCGTCCCCATT
GGCACGGTGGTGGAAACGGACGGCATCCTCCTGCCCACCGCCGCCGGCTACGACATCGGCTGCGGGATGGTGCAGTTGCA
GACGACGCTCACCGCCGAGGACGTCGCCGACGCCACGAAGCGCCGCCGCTGGATTGAAGAGGTGACGAAGCGCATCGCCG
TGGGCGTGGGCGCCAGCCGCGTGCAGAAGCAGCGCAGGGTGACGGACCGCACCTTCGCGGACGTGGTGCGCCACGGCGCC
AAGGCCCTGGGCCGGGGTTCGTCCGTCACCGAGCGCGACTACATCCCCGTCGAGGATGATCGGGTAGACATCCCCGAGCG
CGCCTTCGGCAAGCGTGAGCAACTGGGCAGCCTGGGCGGCGGCAACCACTTCACCGAGATGCAGGTGGACCAGGACGGCC
GCGTGTGGGTGATGCTGCACACCGGCAGCCGCGGCTTCGGGTGGAACATCGCCAAGCACTTCTTCGTGGAGGGCGCCGCG
CAGCTGGGCCTCAAGAGCCGCAGCGAGGACCATGTCTGGCTGGACGCGGAGAGCCCGCTGGGCCGCGACTACTGGAACCT
CCACAACATGGCGGCCAACTTCGCGGTGGCCAACCGGCTCATCATCGGTGAGGCGGTGTGCGCGGCGCTGGAGGACGTCT
TCGGCGGCACGGCCAGCGTGTATTACGAAATCTCCCACAACCTCATCCAGAAGGAGGCGGGGAAGTTCGTCGCCCGAAAG
GGCGCCACGCGCGCGTTCCCCGGAGGACACCCCGCGCTGAAGGGCACGCCCTGGGAGAAGACGGGCCACCCCATCCTCAT
CCCGGGCTCCATGGAGACGGGCAGCGCCATCCTCTTCGCCGAGCCGGGCGCACAGAAGTCCATCTATTCGGTGAACCACG
GCTCTGGCCGCCGCATGTCGCGCGGCGAGGCGCGGCGCGTGCTGAAGCAGGACGTCACCGACAAGCGCATGGCCGAGGCG
GGCATCCTCCTCAATACCCGCCAGACGCCGCTGGACGAGTCCGGCCCCTGCTACAAGAACCTGGACGACGTCCTGGAGAC
GGTGGAGATGGCGGGGCTGGCCCGGGTGGCCTACCGGCTCAAGCCGGTGGCCTGCATCAAGGGCGCGGACTGA

Upstream 100 bases:

>100_bases
GCATCCTCTGCTCCTGTTTTCGGGTTTCGGCTCCTGGCGTCAGCTTCCCTGGACGCTCCCGTCGCTGCCGCGTGTTCATC
CCATCTGGGGAATAAGAGTC

Downstream 100 bases:

>100_bases
GGCGGCCCGGGAGGCGCATGGCCGTCTGCCTGCCGCCAATCCCTGGGAGGCGGGCGGCCCCGGGTCATTTCCGGCTCGGC
GCGTAGGGCTCGTGGGGCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 450; Mature: 449

Protein sequence:

>450_residues
MSWKQRLEKVSEGHYVLAKTKSMKVDADLFLSDKLLWGEGPEQPGLEDSVFDQVVNAASFPGVTRVAVTPDCHLGYGVPI
GTVVETDGILLPTAAGYDIGCGMVQLQTTLTAEDVADATKRRRWIEEVTKRIAVGVGASRVQKQRRVTDRTFADVVRHGA
KALGRGSSVTERDYIPVEDDRVDIPERAFGKREQLGSLGGGNHFTEMQVDQDGRVWVMLHTGSRGFGWNIAKHFFVEGAA
QLGLKSRSEDHVWLDAESPLGRDYWNLHNMAANFAVANRLIIGEAVCAALEDVFGGTASVYYEISHNLIQKEAGKFVARK
GATRAFPGGHPALKGTPWEKTGHPILIPGSMETGSAILFAEPGAQKSIYSVNHGSGRRMSRGEARRVLKQDVTDKRMAEA
GILLNTRQTPLDESGPCYKNLDDVLETVEMAGLARVAYRLKPVACIKGAD

Sequences:

>Translated_450_residues
MSWKQRLEKVSEGHYVLAKTKSMKVDADLFLSDKLLWGEGPEQPGLEDSVFDQVVNAASFPGVTRVAVTPDCHLGYGVPI
GTVVETDGILLPTAAGYDIGCGMVQLQTTLTAEDVADATKRRRWIEEVTKRIAVGVGASRVQKQRRVTDRTFADVVRHGA
KALGRGSSVTERDYIPVEDDRVDIPERAFGKREQLGSLGGGNHFTEMQVDQDGRVWVMLHTGSRGFGWNIAKHFFVEGAA
QLGLKSRSEDHVWLDAESPLGRDYWNLHNMAANFAVANRLIIGEAVCAALEDVFGGTASVYYEISHNLIQKEAGKFVARK
GATRAFPGGHPALKGTPWEKTGHPILIPGSMETGSAILFAEPGAQKSIYSVNHGSGRRMSRGEARRVLKQDVTDKRMAEA
GILLNTRQTPLDESGPCYKNLDDVLETVEMAGLARVAYRLKPVACIKGAD
>Mature_449_residues
SWKQRLEKVSEGHYVLAKTKSMKVDADLFLSDKLLWGEGPEQPGLEDSVFDQVVNAASFPGVTRVAVTPDCHLGYGVPIG
TVVETDGILLPTAAGYDIGCGMVQLQTTLTAEDVADATKRRRWIEEVTKRIAVGVGASRVQKQRRVTDRTFADVVRHGAK
ALGRGSSVTERDYIPVEDDRVDIPERAFGKREQLGSLGGGNHFTEMQVDQDGRVWVMLHTGSRGFGWNIAKHFFVEGAAQ
LGLKSRSEDHVWLDAESPLGRDYWNLHNMAANFAVANRLIIGEAVCAALEDVFGGTASVYYEISHNLIQKEAGKFVARKG
ATRAFPGGHPALKGTPWEKTGHPILIPGSMETGSAILFAEPGAQKSIYSVNHGSGRRMSRGEARRVLKQDVTDKRMAEAG
ILLNTRQTPLDESGPCYKNLDDVLETVEMAGLARVAYRLKPVACIKGAD

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=514, Percent_Identity=30.7392996108949, Blast_Score=175, Evalue=6e-44,
Organism=Escherichia coli, GI2367224, Length=428, Percent_Identity=30.607476635514, Blast_Score=155, Evalue=6e-39,
Organism=Caenorhabditis elegans, GI17506665, Length=452, Percent_Identity=32.7433628318584, Blast_Score=184, Evalue=6e-47,
Organism=Drosophila melanogaster, GI24585217, Length=446, Percent_Identity=31.390134529148, Blast_Score=163, Evalue=3e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 49098; Mature: 48967

Theoretical pI: Translated: 7.38; Mature: 7.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSWKQRLEKVSEGHYVLAKTKSMKVDADLFLSDKLLWGEGPEQPGLEDSVFDQVVNAASF
CCHHHHHHHHCCCCEEEEECCCEEECCEEEEECEEEECCCCCCCCCCHHHHHHHHHHHCC
PGVTRVAVTPDCHLGYGVPIGTVVETDGILLPTAAGYDIGCGMVQLQTTLTAEDVADATK
CCCEEEEECCCCCCCCCCCCCCEEECCCEEEECCCCCCCCCCEEEEEEHHHHHHHHHHHH
RRRWIEEVTKRIAVGVGASRVQKQRRVTDRTFADVVRHGAKALGRGSSVTERDYIPVEDD
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
RVDIPERAFGKREQLGSLGGGNHFTEMQVDQDGRVWVMLHTGSRGFGWNIAKHFFVEGAA
CCCCCHHHCCCHHHHCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
QLGLKSRSEDHVWLDAESPLGRDYWNLHNMAANFAVANRLIIGEAVCAALEDVFGGTASV
HHCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
YYEISHNLIQKEAGKFVARKGATRAFPGGHPALKGTPWEKTGHPILIPGSMETGSAILFA
EEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEE
EPGAQKSIYSVNHGSGRRMSRGEARRVLKQDVTDKRMAEAGILLNTRQTPLDESGPCYKN
CCCCCCCEEEECCCCCCCCCHHHHHHHHHHCCHHHHHHHCCEEEECCCCCCCCCCCCCCC
LDDVLETVEMAGLARVAYRLKPVACIKGAD
HHHHHHHHHHHHHHHHHHHHCCEEEECCCC
>Mature Secondary Structure 
SWKQRLEKVSEGHYVLAKTKSMKVDADLFLSDKLLWGEGPEQPGLEDSVFDQVVNAASF
CHHHHHHHHCCCCEEEEECCCEEECCEEEEECEEEECCCCCCCCCCHHHHHHHHHHHCC
PGVTRVAVTPDCHLGYGVPIGTVVETDGILLPTAAGYDIGCGMVQLQTTLTAEDVADATK
CCCEEEEECCCCCCCCCCCCCCEEECCCEEEECCCCCCCCCCEEEEEEHHHHHHHHHHHH
RRRWIEEVTKRIAVGVGASRVQKQRRVTDRTFADVVRHGAKALGRGSSVTERDYIPVEDD
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
RVDIPERAFGKREQLGSLGGGNHFTEMQVDQDGRVWVMLHTGSRGFGWNIAKHFFVEGAA
CCCCCHHHCCCHHHHCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
QLGLKSRSEDHVWLDAESPLGRDYWNLHNMAANFAVANRLIIGEAVCAALEDVFGGTASV
HHCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
YYEISHNLIQKEAGKFVARKGATRAFPGGHPALKGTPWEKTGHPILIPGSMETGSAILFA
EEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEE
EPGAQKSIYSVNHGSGRRMSRGEARRVLKQDVTDKRMAEAGILLNTRQTPLDESGPCYKN
CCCCCCCEEEECCCCCCCCCHHHHHHHHHHCCHHHHHHHCCEEEECCCCCCCCCCCCCCC
LDDVLETVEMAGLARVAYRLKPVACIKGAD
HHHHHHHHHHHHHHHHHHHHCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]