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The map label for this gene is insF1 [H]

Identifier: 108756780

GI number: 108756780

Start: 6765565

End: 6766272

Strand: Direct

Name: insF1 [H]

Synonym: MXAN_5436

Alternate gene names: 108756780

Gene position: 6765565-6766272 (Clockwise)

Preceding gene: 108762726

Following gene: 108764000

Centisome position: 74.02

GC content: 65.82

Gene sequence:

>708_bases
GTGAGTGAGACAGTTCGTACCCAGCAGTTTAGTGCGCAGGGCGACCCAGGCAGGAACGATGAGCCTGCCCCGGCTCCGTG
GACACCCGAGATGTGGTGGAAAGGGTGTCCGATGTCGGCAAGTGACGCGAGCTACTACGCGTGGGCCAGCCGGCCGGAGT
CCGCGCGCGAGGCGAAAGACGATTCGTTGACGAAGGTCGTCGCCACCGTCCACGAGGCGAGTCGACGCCGCTACGGCAGC
CCGCGCGTGTTCCAGGAGTTGAAGGCCCGAGGCTCCCGCCTCAGCAGGAAGCGGGTGGCCCGTCTGATGCGGCAGAAGCG
GCTGCGCGCCCGGCCTCGACGCCGCTTCGTGAAAACGACGGACTCGGCTCATCCGCACCCCATCGCCCCCAACGTGCTTG
CGCGCGACTTCTTCGCCGACAAGCCCAACAGCAAATGGGTGGGCGATATCACCTATGTCTGGACGGCAGAGGGATGGCTG
TACCTGGCCGTCGTGCTGGACCTCTTCAGCCGCAAGGTGGTGGGCTGGGCGATGAGCGACCCCATCGACCGTCAGCTCGT
GCTGGCCGCACTGAGCATGGCACTGCTCAACCGCCCCGCGCAGGACCTCCACCACTCGGACCGAGGCAGCCAGGGTGGAT
TCAACGGGTCGTCGCAACACTCGACGTTGAGGAGTTGCGATGGGGAACAACAAGAGTCGACGGGCTGA

Upstream 100 bases:

>100_bases
AAGGAATCCCTAGCGCATTCGACTCACGGCGCGCCGTTGACACGTCAGCGAGCTCTCGCAGAGATGGGATGACGCGTCAG
CCGTCCCCCTCTCTGCCAAC

Downstream 100 bases:

>100_bases
CCGTGCTGGACGCCCGCCTATGTCGTCGCCTGGGCGTCCGCCGGTGGGACGGCGTGAGCACCGACAATGATTCTGGGAAG
CAATCGCCCGCGGACTTTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 234

Protein sequence:

>235_residues
MSETVRTQQFSAQGDPGRNDEPAPAPWTPEMWWKGCPMSASDASYYAWASRPESAREAKDDSLTKVVATVHEASRRRYGS
PRVFQELKARGSRLSRKRVARLMRQKRLRARPRRRFVKTTDSAHPHPIAPNVLARDFFADKPNSKWVGDITYVWTAEGWL
YLAVVLDLFSRKVVGWAMSDPIDRQLVLAALSMALLNRPAQDLHHSDRGSQGGFNGSSQHSTLRSCDGEQQESTG

Sequences:

>Translated_235_residues
MSETVRTQQFSAQGDPGRNDEPAPAPWTPEMWWKGCPMSASDASYYAWASRPESAREAKDDSLTKVVATVHEASRRRYGS
PRVFQELKARGSRLSRKRVARLMRQKRLRARPRRRFVKTTDSAHPHPIAPNVLARDFFADKPNSKWVGDITYVWTAEGWL
YLAVVLDLFSRKVVGWAMSDPIDRQLVLAALSMALLNRPAQDLHHSDRGSQGGFNGSSQHSTLRSCDGEQQESTG
>Mature_234_residues
SETVRTQQFSAQGDPGRNDEPAPAPWTPEMWWKGCPMSASDASYYAWASRPESAREAKDDSLTKVVATVHEASRRRYGSP
RVFQELKARGSRLSRKRVARLMRQKRLRARPRRRFVKTTDSAHPHPIAPNVLARDFFADKPNSKWVGDITYVWTAEGWLY
LAVVLDLFSRKVVGWAMSDPIDRQLVLAALSMALLNRPAQDLHHSDRGSQGGFNGSSQHSTLRSCDGEQQESTG

Specific function: Involved in the transposition of the insertion sequence IS3 [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Homo sapiens, GI310129419, Length=160, Percent_Identity=38.75, Blast_Score=114, Evalue=7e-26,
Organism=Escherichia coli, GI1788405, Length=178, Percent_Identity=42.6966292134831, Blast_Score=139, Evalue=1e-34,
Organism=Escherichia coli, GI1787263, Length=178, Percent_Identity=42.6966292134831, Blast_Score=139, Evalue=1e-34,
Organism=Escherichia coli, GI1786753, Length=178, Percent_Identity=42.6966292134831, Blast_Score=139, Evalue=1e-34,
Organism=Escherichia coli, GI1786570, Length=178, Percent_Identity=42.6966292134831, Blast_Score=139, Evalue=1e-34,
Organism=Escherichia coli, GI1786490, Length=178, Percent_Identity=42.6966292134831, Blast_Score=139, Evalue=1e-34,
Organism=Escherichia coli, GI1789981, Length=162, Percent_Identity=32.7160493827161, Blast_Score=75, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 26495; Mature: 26364

Theoretical pI: Translated: 10.60; Mature: 10.60

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSETVRTQQFSAQGDPGRNDEPAPAPWTPEMWWKGCPMSASDASYYAWASRPESAREAKD
CCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCEEHCCCCCCHHHHHHH
DSLTKVVATVHEASRRRYGSPRVFQELKARGSRLSRKRVARLMRQKRLRARPRRRFVKTT
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DSAHPHPIAPNVLARDFFADKPNSKWVGDITYVWTAEGWLYLAVVLDLFSRKVVGWAMSD
CCCCCCCCCCHHHHHHHHCCCCCCCEEECEEEEEECCCHHHHHHHHHHHHHHHHHHHHCC
PIDRQLVLAALSMALLNRPAQDLHHSDRGSQGGFNGSSQHSTLRSCDGEQQESTG
CHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SETVRTQQFSAQGDPGRNDEPAPAPWTPEMWWKGCPMSASDASYYAWASRPESAREAKD
CCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCEEHCCCCCCHHHHHHH
DSLTKVVATVHEASRRRYGSPRVFQELKARGSRLSRKRVARLMRQKRLRARPRRRFVKTT
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DSAHPHPIAPNVLARDFFADKPNSKWVGDITYVWTAEGWLYLAVVLDLFSRKVVGWAMSD
CCCCCCCCCCHHHHHHHHCCCCCCCEEECEEEEEECCCHHHHHHHHHHHHHHHHHHHHCC
PIDRQLVLAALSMALLNRPAQDLHHSDRGSQGGFNGSSQHSTLRSCDGEQQESTG
CHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2987844; 9278503 [H]