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The map label for this gene is rlpA [C]

Identifier: 108563945

GI number: 108563945

Start: 1583006

End: 1583950

Strand: Reverse

Name: rlpA [C]

Synonym: HPAG1_1520

Alternate gene names: 108563945

Gene position: 1583950-1583006 (Counterclockwise)

Preceding gene: 108563946

Following gene: 108563944

Centisome position: 99.22

GC content: 41.9

Gene sequence:

>945_bases
ATGGGTTTGGCGTTGAAACAAGTTTGTTTTTTAGGCGTTATTTTTTTGATTAGCGCTTGTGCGGTTAAAAAAGAGGGGGT
AAAGAATTTGTCTTACAAGCATGAAAGCTTGCGCGCTTATGAAAACGCTAAAGACTATGATCCGACAACCAAAAAAGCCG
CCTATAAACGCAATTTTTTTGAACGCCATTTCAAACACCACTCCGATTCGCAAGATAGCAATACAAAACAACCCCTAGAT
AACGGCATGCGCGATTCTAGTGCGATCCAAAGAGCCACCATGCGCCCTTATCAAGTGGGGGGCAAGTGGTATTACCCCAC
TAAAGTGGATTTAGGCGAAAAATTTGATGGCATTGCGAGTTGGTATGGCCCCAATTTCCATGCCAAAAAAACCAGTAATG
GGGAAATTTATAACATGTATGCCCACACCGCCGCGCACAAGACTTTACCCATGAACACCGTGGTGAAAGTCATCAATGTT
GAAAACCATTTAAGCACCATTGTGCGCATCAACGATAGAGGGCCTTTTGTGAGCGATCGCATCATTGATTTGTCTAATGC
GGCCGCTAGGGATATTGACATGGTTAAAAAAGGCACGGCCAGCGTGCGTCTTATTGTTTTGGGTTTTGGTGGGGTTATCT
CCAAGCAATACGAACAATCCTTTAACGCTAGCTATTCAAAGATCTTATACAAGGAATTTAAAGTCGGCGAGAGCGAAAAA
AGCGTGAGCGGAGGGAAATTTTCTTTGCAAATGGGGGCTTTTAGAAACCAAATAGGCGCTCAAACTTTAGCGGATAAATT
GCAAGCAGAAAATCCAAATTACAGCGTTAAGGTTGCTTTTAAAGACGATTTGTATAAAGTTTTAGTTCAAGGGTTTCAAA
GCGAAGAAGAGGCTAGGGATTTTATGAAAAAATATAACCAGAATGCGGTTTTAACGAGAGAATGA

Upstream 100 bases:

>100_bases
GTATCCAATTAGCCAATAACCTCAAAGATTCTAATATTTTTATCCACCAGCGCTTAATCATCCCTACCAACAAAAAATTA
CTCGCTACAAGGGAATTTTA

Downstream 100 bases:

>100_bases
TTAAGTTATTGCTTTTAGATGTGGATGGCACGCTCACAGATGGGTCGTTGTATTTTGATGAAAATTTTCACGAAATCAAG
GCTTTTAATGTCAAAGACGG

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 313

Protein sequence:

>314_residues
MGLALKQVCFLGVIFLISACAVKKEGVKNLSYKHESLRAYENAKDYDPTTKKAAYKRNFFERHFKHHSDSQDSNTKQPLD
NGMRDSSAIQRATMRPYQVGGKWYYPTKVDLGEKFDGIASWYGPNFHAKKTSNGEIYNMYAHTAAHKTLPMNTVVKVINV
ENHLSTIVRINDRGPFVSDRIIDLSNAAARDIDMVKKGTASVRLIVLGFGGVISKQYEQSFNASYSKILYKEFKVGESEK
SVSGGKFSLQMGAFRNQIGAQTLADKLQAENPNYSVKVAFKDDLYKVLVQGFQSEEEARDFMKKYNQNAVLTRE

Sequences:

>Translated_314_residues
MGLALKQVCFLGVIFLISACAVKKEGVKNLSYKHESLRAYENAKDYDPTTKKAAYKRNFFERHFKHHSDSQDSNTKQPLD
NGMRDSSAIQRATMRPYQVGGKWYYPTKVDLGEKFDGIASWYGPNFHAKKTSNGEIYNMYAHTAAHKTLPMNTVVKVINV
ENHLSTIVRINDRGPFVSDRIIDLSNAAARDIDMVKKGTASVRLIVLGFGGVISKQYEQSFNASYSKILYKEFKVGESEK
SVSGGKFSLQMGAFRNQIGAQTLADKLQAENPNYSVKVAFKDDLYKVLVQGFQSEEEARDFMKKYNQNAVLTRE
>Mature_313_residues
GLALKQVCFLGVIFLISACAVKKEGVKNLSYKHESLRAYENAKDYDPTTKKAAYKRNFFERHFKHHSDSQDSNTKQPLDN
GMRDSSAIQRATMRPYQVGGKWYYPTKVDLGEKFDGIASWYGPNFHAKKTSNGEIYNMYAHTAAHKTLPMNTVVKVINVE
NHLSTIVRINDRGPFVSDRIIDLSNAAARDIDMVKKGTASVRLIVLGFGGVISKQYEQSFNASYSKILYKEFKVGESEKS
VSGGKFSLQMGAFRNQIGAQTLADKLQAENPNYSVKVAFKDDLYKVLVQGFQSEEEARDFMKKYNQNAVLTRE

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=131, Percent_Identity=30.5343511450382, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 35450; Mature: 35318

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLALKQVCFLGVIFLISACAVKKEGVKNLSYKHESLRAYENAKDYDPTTKKAAYKRNFF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
ERHFKHHSDSQDSNTKQPLDNGMRDSSAIQRATMRPYQVGGKWYYPTKVDLGEKFDGIAS
HHHHHCCCCCCCCCCCCHHHCCCCHHHHHHHHHCCCEECCCEEECCCCCCCCCHHHHHHH
WYGPNFHAKKTSNGEIYNMYAHTAAHKTLPMNTVVKVINVENHLSTIVRINDRGPFVSDR
HCCCCCCCCCCCCCCEEEEEHHHHHHCCCCHHHHHHHHHHHHHHEEEEEECCCCCCCCCC
IIDLSNAAARDIDMVKKGTASVRLIVLGFGGVISKQYEQSFNASYSKILYKEFKVGESEK
EEECCCHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCC
SVSGGKFSLQMGAFRNQIGAQTLADKLQAENPNYSVKVAFKDDLYKVLVQGFQSEEEARD
CCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHCCCHHHHHH
FMKKYNQNAVLTRE
HHHHHCCCCEEECC
>Mature Secondary Structure 
GLALKQVCFLGVIFLISACAVKKEGVKNLSYKHESLRAYENAKDYDPTTKKAAYKRNFF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
ERHFKHHSDSQDSNTKQPLDNGMRDSSAIQRATMRPYQVGGKWYYPTKVDLGEKFDGIAS
HHHHHCCCCCCCCCCCCHHHCCCCHHHHHHHHHCCCEECCCEEECCCCCCCCCHHHHHHH
WYGPNFHAKKTSNGEIYNMYAHTAAHKTLPMNTVVKVINVENHLSTIVRINDRGPFVSDR
HCCCCCCCCCCCCCCEEEEEHHHHHHCCCCHHHHHHHHHHHHHHEEEEEECCCCCCCCCC
IIDLSNAAARDIDMVKKGTASVRLIVLGFGGVISKQYEQSFNASYSKILYKEFKVGESEK
EEECCCHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCC
SVSGGKFSLQMGAFRNQIGAQTLADKLQAENPNYSVKVAFKDDLYKVLVQGFQSEEEARD
CCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHCCCHHHHHH
FMKKYNQNAVLTRE
HHHHHCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9252185 [H]