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The map label for this gene is flgB [H]

Identifier: 108563933

GI number: 108563933

Start: 1572033

End: 1572455

Strand: Reverse

Name: flgB [H]

Synonym: HPAG1_1508

Alternate gene names: 108563933

Gene position: 1572455-1572033 (Counterclockwise)

Preceding gene: 108563935

Following gene: 108563932

Centisome position: 98.5

GC content: 38.77

Gene sequence:

>423_bases
ATGGATTTTTCTAAAGCGTTTGGATTGGTTTATAAAGCGTTGGATTATAGGGCTTTAAGGCAAGATATGATCGCTTCTAA
CATCGCTAATGTGGACACCCCTTTTTACAGGCCAAAGGATTTGGATTTTGAAAGCGTTTTAGCGAAGAAAAAAGCGGAAA
TTTTTGAAAACCAATCCAGTAAAGTTTTGCCTTTAGCCCACACTAACCCTAGGCATTTAGATTTTGAAAAGAGCGCTAAA
GATGGGGCAAGCCTTTTTTTTAGAGACGGGCATTTGGCTAAAAATGATGGCAACAGCGTGGATTTAGACATAGAAACGAG
TGAAATGGGCAAGAACTCCACCATGTATTTAGCCTTGAGTTCAGCCTTAAAAAAGTATCGAGGCGTGATCAATTACGCCA
TTGACTCTAGTAAGAATTTATAA

Upstream 100 bases:

>100_bases
CATGCTTTGAAATTGATCGCATTCTTTGATGAGAAGCGGGCTGATTTTGGAATGTTTTTTGCATGCTTTAATTTTGCAAG
GGTTTAAAAAAGGGGTTTTG

Downstream 100 bases:

>100_bases
TTAGGAGAAAAACATGTTTTTATCTTCTTTTGATATTAGCGGTTATGGTTTGTCCGCCCAACGCTTAAGGGCTAATTTGA
TTTCTTCTAATATCGCTAAC

Product: flagellar basal body rod protein FlgB

Products: NA

Alternate protein names: Putative proximal rod protein [H]

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MDFSKAFGLVYKALDYRALRQDMIASNIANVDTPFYRPKDLDFESVLAKKKAEIFENQSSKVLPLAHTNPRHLDFEKSAK
DGASLFFRDGHLAKNDGNSVDLDIETSEMGKNSTMYLALSSALKKYRGVINYAIDSSKNL

Sequences:

>Translated_140_residues
MDFSKAFGLVYKALDYRALRQDMIASNIANVDTPFYRPKDLDFESVLAKKKAEIFENQSSKVLPLAHTNPRHLDFEKSAK
DGASLFFRDGHLAKNDGNSVDLDIETSEMGKNSTMYLALSSALKKYRGVINYAIDSSKNL
>Mature_140_residues
MDFSKAFGLVYKALDYRALRQDMIASNIANVDTPFYRPKDLDFESVLAKKKAEIFENQSSKVLPLAHTNPRHLDFEKSAK
DGASLFFRDGHLAKNDGNSVDLDIETSEMGKNSTMYLALSSALKKYRGVINYAIDSSKNL

Specific function: Unknown

COG id: COG1815

COG function: function code N; Flagellar basal body protein

Gene ontology:

Cell location: Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flagella basal body rod proteins family [H]

Homologues:

Organism=Escherichia coli, GI1787313, Length=127, Percent_Identity=34.6456692913386, Blast_Score=72, Evalue=1e-14,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001444
- InterPro:   IPR019776
- InterPro:   IPR006300 [H]

Pfam domain/function: PF00460 Flg_bb_rod [H]

EC number: NA

Molecular weight: Translated: 15717; Mature: 15717

Theoretical pI: Translated: 8.78; Mature: 8.78

Prosite motif: PS00588 FLAGELLA_BB_ROD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFSKAFGLVYKALDYRALRQDMIASNIANVDTPFYRPKDLDFESVLAKKKAEIFENQSS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
KVLPLAHTNPRHLDFEKSAKDGASLFFRDGHLAKNDGNSVDLDIETSEMGKNSTMYLALS
CEEEEECCCCCCCCCCCCCCCCCEEEEECCCEECCCCCEEEEEEEHHHCCCCCEEEEHHH
SALKKYRGVINYAIDSSKNL
HHHHHHHHHHHEECCCCCCC
>Mature Secondary Structure
MDFSKAFGLVYKALDYRALRQDMIASNIANVDTPFYRPKDLDFESVLAKKKAEIFENQSS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
KVLPLAHTNPRHLDFEKSAKDGASLFFRDGHLAKNDGNSVDLDIETSEMGKNSTMYLALS
CEEEEECCCCCCCCCCCCCCCCCEEEEECCCEECCCCCEEEEEEEHHHCCCCCEEEEHHH
SALKKYRGVINYAIDSSKNL
HHHHHHHHHHHEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]