| Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
|---|---|
| Accession | NC_008086 |
| Length | 1,596,366 |
Click here to switch to the map view.
The map label for this gene is addA [H]
Identifier: 108563927
GI number: 108563927
Start: 1563658
End: 1566519
Strand: Reverse
Name: addA [H]
Synonym: HPAG1_1502
Alternate gene names: 108563927
Gene position: 1566519-1563658 (Counterclockwise)
Preceding gene: 108563930
Following gene: 108563926
Centisome position: 98.13
GC content: 37.63
Gene sequence:
>2862_bases ATGGACACAAAAAGACAGTGCATGGCTTTAAAGGCTTCAGCAGGGAGCGGGAAGACTTTCGCTTTGAGCGTGCGGTTTTT GGCCTTATTGTTTAAGGGGGCTAATCCTAGCGAGATTTTGACGCTCACTTTCACTAAAAAAGCCACTGCCGAAATGAAGG AGCGCATTTTAGACTATTTAAAAATTTTGCAAAAAGAAAACCTTGAAAATGAAAATAAAAAAGAAAAATCCCAAAATATC CTAAAAGAATTAGAAGAAAAATACCATTTAGACCCTAGCTTGGTGCGAAATAGCGCTCCAAAAATCTACCAACGCTTTTT AAACGCCGAAATCAGAATCAGCACCATTGACGCGTTTTTCCAAAGCATTTTAAGGAAATTTTGTTGGTTTGTGGGGTTGA GCGCGAATTTTGAAGTCAATGAAGACACCAAAGCGCACCAGCAACAGCTTAATGATGGTTTTTTGAGCGCTTTAAATAAC GAACAACTTGAAGAATTGAGCGTTTTTATCGTCCAATGCTTAAGTTATGATAGTTACACAAGCGATTCTATTTTAGAGCG GCTGCGTTTTTTAAAAAACAAGCTCTATTTATTTGATTCTAACAAGCAAGAGCCTGTATTTGATGAAGAGGGTTTTTTAG AAAAACTAAAGAGCTTAAACAACCAAATTCAAAACATAGAAACAGCGTCAGATAGGGCTAAAACAGCCATTAAATGCGAT AGTTTTAGAGGATTTTTAAACAGCTCTTTAACTTGGCTTGAAAAAAAGAGTGAATATCAATCTTTCAAAAAACTCAAAAG TGAAATCCCCACTTTAGAGAGCGAATGCGAAGAGATTGAAAACGATCTAAAACGCTATTATGAAGCCAAAGAAACCGCAA TATTTAAAAAATTCCCTAAATTCATCCAGCTTTATGATAAAGCCACTTCTAAAATCCAAGCCCTAGATTTTGATGCGATT AAAGATAAGGTTCATGTCTTATTGAATGGTTATGAAGAAATGCCGGCAGAGTTTTTTTATTTCAGGTTGGACAGCAAGAT CGCGCACATTTTGATTGATGAATTTCAAGACACGAGCTTGAACGATTATAAGATTTTAGCCCCTTTTATTGATGAGATTA AAGCCGGGATAGGGCAAGCTAAATGGCAAAGGAGCGTGTTTTTTGTGGGCGATGTCAAGCAGAGCATTTATGCCTTTAGG GGGAGTTTTAGCTCCTTGTTTGAAAGCGTTTCTAAGGATTTTTACCACGATAATTTACAATTCAACCACCGCAGTGCGCC TTTAATCATTAATTACGTGAACACCATTTTTAAAAAGGCTTATCAAAATTCCCCCACCGCTTATTTGGAGCAAAAATACC CTAAAGCTTCCAACAATAAACATGTTACAGAGGGCTATGTTAAAGTCTCTTTAGTGGCTGATGAAAGAGAATTGTTATTA GAACAAATCTTACAAGAAGCTCAAAACCTTTTAGATCATCATATTGATCCTAAAGACATTACCATTTTATGCGCCACTAA TGACGACGCTTTAGAAGTCAAAAATTATTTGCAAGAGTATTTGAGCGAAATTTGCCCGAGTACGGAATCTAGCGCTAAAT TGTCTCAATTTGTAGAATCTAAAATCATTAAGAACGCTTTAAAATACGCTCTAGCTGAAGAGCCTTACAAGCCCTTTTAC AAGCACAGCGTTTTAAAACTCGCTGGATACTTGCATGATGATGCGATCGCCTTACCTAGTTTTAACCCTAAAAAAGAGAG CGTGGCAGGCTTTGTGTGGAAAATTATGGAGCAGTTTAAACTTTATGGAGAGCCTGCGCAAAGCTGCTTGGAATTAGCGG TTGGGTGTGAAGACGCGAATGGATTTTTAGAAAAATTAGAGGCTAAATCGATCGCTTCTTTCAATTTAAAAGGCGCGCAG ATCATGACCATTCATAAATCTAAAGGCATGCAATTCCCTTATGTGATCGTGTGCGAACGCTTGGGCAAGCCTAATTCAAG CCATGCCAATCAACTCCTTGAAGAATATAATGGTGCAGAGCTTCTTCGCCTTTATTACAGAATGAAAAATCGTGAGGTGG TGGATAAAGATTACGCTAGGGCTTTAAATAAAGAAGAAGCGGCCAAAGATCATGAAGAAACCAATGTGTATTATGTCGCA TTCACTAGGGCTGAGTTAGGGCTGATTGTCGTGGCTAAAGACAAAGACCAAAAAAAAGACAAAAAAGAAAGCAAAAAAGA AAGCAAAAACAAAGGAATGCGTGAAAAATTGGATCTTTTTCCTTTAGAAGAGGGAACAATCGCACCGGTTATTTCTCCAC AAAAAGAGCCTTTAATCGCAAGTGTGTTAATCAAACCCCATGCCTATGGCGAGCAAGTCCAAGAAATAGAAGAAGAGCCT AGCGATTATGAAAAGAATAACGACCAGGAAGCGATCAATTTTGGTATCGCCTTGCACAAGGGGTTAGAATACCAATACGC TTATAATATTCCTAAAAAAAGCGTTTTAGAATATTTAAACTACCATCATGGTTTTTATGGTTTGGATTATCAAGCGTTAG AAGAGAGTTTAGAGCTTTTTGAAAACGACGCAGAGATACAAGCTCTTTTTAAAAATTTGCCCTTAAAGGGCGAAGCGGCT TTTTTATTTGAAGGGGTTGTGTCTAGGATTGATGTTTTATTGTGGGATAGGGGGCAAAATTTGTATGTTTTAGATTATAA AAGCTCTCAAAATTACCAGCAAAGCCATAAAGCGCAAGTGTCTCATTACGCTGAGTTTTTGAAAACTCAAGCCCCCCATT TTAAGATACAAGCGGGCATCATTTACGCTCATAAAAGACTGCTTGAAAAATTATGGGTTTGA
Upstream 100 bases:
>100_bases AACCCTGTGATTATAGCAAAAGATTAGGGTTTTTTAGCTTAAGTAAAAAAGGCTTTTAGGTTATAATAAAGACAAAACAG AAATTTTAGGATAGATCTCA
Downstream 100 bases:
>100_bases AATTAAAAATTTTAAGGTTGTCTATGAATGTCAAAAAAACAGAAAACGCGCTCAGTTTGACGCTTAAAAACTTTATTAAA AGCGAGTCTTTTGGAGGGAT
Product: putative recombination protein RecB
Products: NA
Alternate protein names: ATP-dependent helicase/nuclease AddA [H]
Number of amino acids: Translated: 953; Mature: 953
Protein sequence:
>953_residues MDTKRQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQKENLENENKKEKSQNI LKELEEKYHLDPSLVRNSAPKIYQRFLNAEIRISTIDAFFQSILRKFCWFVGLSANFEVNEDTKAHQQQLNDGFLSALNN EQLEELSVFIVQCLSYDSYTSDSILERLRFLKNKLYLFDSNKQEPVFDEEGFLEKLKSLNNQIQNIETASDRAKTAIKCD SFRGFLNSSLTWLEKKSEYQSFKKLKSEIPTLESECEEIENDLKRYYEAKETAIFKKFPKFIQLYDKATSKIQALDFDAI KDKVHVLLNGYEEMPAEFFYFRLDSKIAHILIDEFQDTSLNDYKILAPFIDEIKAGIGQAKWQRSVFFVGDVKQSIYAFR GSFSSLFESVSKDFYHDNLQFNHRSAPLIINYVNTIFKKAYQNSPTAYLEQKYPKASNNKHVTEGYVKVSLVADERELLL EQILQEAQNLLDHHIDPKDITILCATNDDALEVKNYLQEYLSEICPSTESSAKLSQFVESKIIKNALKYALAEEPYKPFY KHSVLKLAGYLHDDAIALPSFNPKKESVAGFVWKIMEQFKLYGEPAQSCLELAVGCEDANGFLEKLEAKSIASFNLKGAQ IMTIHKSKGMQFPYVIVCERLGKPNSSHANQLLEEYNGAELLRLYYRMKNREVVDKDYARALNKEEAAKDHEETNVYYVA FTRAELGLIVVAKDKDQKKDKKESKKESKNKGMREKLDLFPLEEGTIAPVISPQKEPLIASVLIKPHAYGEQVQEIEEEP SDYEKNNDQEAINFGIALHKGLEYQYAYNIPKKSVLEYLNYHHGFYGLDYQALEESLELFENDAEIQALFKNLPLKGEAA FLFEGVVSRIDVLLWDRGQNLYVLDYKSSQNYQQSHKAQVSHYAEFLKTQAPHFKIQAGIIYAHKRLLEKLWV
Sequences:
>Translated_953_residues MDTKRQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQKENLENENKKEKSQNI LKELEEKYHLDPSLVRNSAPKIYQRFLNAEIRISTIDAFFQSILRKFCWFVGLSANFEVNEDTKAHQQQLNDGFLSALNN EQLEELSVFIVQCLSYDSYTSDSILERLRFLKNKLYLFDSNKQEPVFDEEGFLEKLKSLNNQIQNIETASDRAKTAIKCD SFRGFLNSSLTWLEKKSEYQSFKKLKSEIPTLESECEEIENDLKRYYEAKETAIFKKFPKFIQLYDKATSKIQALDFDAI KDKVHVLLNGYEEMPAEFFYFRLDSKIAHILIDEFQDTSLNDYKILAPFIDEIKAGIGQAKWQRSVFFVGDVKQSIYAFR GSFSSLFESVSKDFYHDNLQFNHRSAPLIINYVNTIFKKAYQNSPTAYLEQKYPKASNNKHVTEGYVKVSLVADERELLL EQILQEAQNLLDHHIDPKDITILCATNDDALEVKNYLQEYLSEICPSTESSAKLSQFVESKIIKNALKYALAEEPYKPFY KHSVLKLAGYLHDDAIALPSFNPKKESVAGFVWKIMEQFKLYGEPAQSCLELAVGCEDANGFLEKLEAKSIASFNLKGAQ IMTIHKSKGMQFPYVIVCERLGKPNSSHANQLLEEYNGAELLRLYYRMKNREVVDKDYARALNKEEAAKDHEETNVYYVA FTRAELGLIVVAKDKDQKKDKKESKKESKNKGMREKLDLFPLEEGTIAPVISPQKEPLIASVLIKPHAYGEQVQEIEEEP SDYEKNNDQEAINFGIALHKGLEYQYAYNIPKKSVLEYLNYHHGFYGLDYQALEESLELFENDAEIQALFKNLPLKGEAA FLFEGVVSRIDVLLWDRGQNLYVLDYKSSQNYQQSHKAQVSHYAEFLKTQAPHFKIQAGIIYAHKRLLEKLWV >Mature_953_residues MDTKRQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQKENLENENKKEKSQNI LKELEEKYHLDPSLVRNSAPKIYQRFLNAEIRISTIDAFFQSILRKFCWFVGLSANFEVNEDTKAHQQQLNDGFLSALNN EQLEELSVFIVQCLSYDSYTSDSILERLRFLKNKLYLFDSNKQEPVFDEEGFLEKLKSLNNQIQNIETASDRAKTAIKCD SFRGFLNSSLTWLEKKSEYQSFKKLKSEIPTLESECEEIENDLKRYYEAKETAIFKKFPKFIQLYDKATSKIQALDFDAI KDKVHVLLNGYEEMPAEFFYFRLDSKIAHILIDEFQDTSLNDYKILAPFIDEIKAGIGQAKWQRSVFFVGDVKQSIYAFR GSFSSLFESVSKDFYHDNLQFNHRSAPLIINYVNTIFKKAYQNSPTAYLEQKYPKASNNKHVTEGYVKVSLVADERELLL EQILQEAQNLLDHHIDPKDITILCATNDDALEVKNYLQEYLSEICPSTESSAKLSQFVESKIIKNALKYALAEEPYKPFY KHSVLKLAGYLHDDAIALPSFNPKKESVAGFVWKIMEQFKLYGEPAQSCLELAVGCEDANGFLEKLEAKSIASFNLKGAQ IMTIHKSKGMQFPYVIVCERLGKPNSSHANQLLEEYNGAELLRLYYRMKNREVVDKDYARALNKEEAAKDHEETNVYYVA FTRAELGLIVVAKDKDQKKDKKESKKESKNKGMREKLDLFPLEEGTIAPVISPQKEPLIASVLIKPHAYGEQVQEIEEEP SDYEKNNDQEAINFGIALHKGLEYQYAYNIPKKSVLEYLNYHHGFYGLDYQALEESLELFENDAEIQALFKNLPLKGEAA FLFEGVVSRIDVLLWDRGQNLYVLDYKSSQNYQQSHKAQVSHYAEFLKTQAPHFKIQAGIIYAHKRLLEKLWV
Specific function: The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination. The AddA nuclease domai
COG id: COG1074
COG function: function code L; ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 uvrD-like helicase C-terminal domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014152 - InterPro: IPR014017 - InterPro: IPR000212 - InterPro: IPR011604 - InterPro: IPR014016 - InterPro: IPR011335 [H]
Pfam domain/function: PF00580 UvrD-helicase [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 109895; Mature: 109895
Theoretical pI: Translated: 6.24; Mature: 6.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDTKRQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYL CCCHHHHHEEECCCCCCCEEEHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHH KILQKENLENENKKEKSQNILKELEEKYHLDPSLVRNSAPKIYQRFLNAEIRISTIDAFF HHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHCCCCEEEHHHHHHH QSILRKFCWFVGLSANFEVNEDTKAHQQQLNDGFLSALNNEQLEELSVFIVQCLSYDSYT HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCC SDSILERLRFLKNKLYLFDSNKQEPVFDEEGFLEKLKSLNNQIQNIETASDRAKTAIKCD HHHHHHHHHHHHHCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SFRGFLNSSLTWLEKKSEYQSFKKLKSEIPTLESECEEIENDLKRYYEAKETAIFKKFPK HHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FIQLYDKATSKIQALDFDAIKDKVHVLLNGYEEMPAEFFYFRLDSKIAHILIDEFQDTSL HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHCCHHHEEHHHHHHHHHHHHHHHCCCCC NDYKILAPFIDEIKAGIGQAKWQRSVFFVGDVKQSIYAFRGSFSSLFESVSKDFYHDNLQ CCCEEHHHHHHHHHHCCCHHHHHCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC FNHRSAPLIINYVNTIFKKAYQNSPTAYLEQKYPKASNNKHVTEGYVKVSLVADERELLL CCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCEEECEEEEEEECCHHHHHH EQILQEAQNLLDHHIDPKDITILCATNDDALEVKNYLQEYLSEICPSTESSAKLSQFVES HHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH KIIKNALKYALAEEPYKPFYKHSVLKLAGYLHDDAIALPSFNPKKESVAGFVWKIMEQFK HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHH LYGEPAQSCLELAVGCEDANGFLEKLEAKSIASFNLKGAQIMTIHKSKGMQFPYVIVCER HCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHH LGKPNSSHANQLLEEYNGAELLRLYYRMKNREVVDKDYARALNKEEAAKDHEETNVYYVA HCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHCCCCCCCEEEEE FTRAELGLIVVAKDKDQKKDKKESKKESKNKGMREKLDLFPLEEGTIAPVISPQKEPLIA EEECCCCEEEEECCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCH SVLIKPHAYGEQVQEIEEEPSDYEKNNDQEAINFGIALHKGLEYQYAYNIPKKSVLEYLN HHEECCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHH YHHGFYGLDYQALEESLELFENDAEIQALFKNLPLKGEAAFLFEGVVSRIDVLLWDRGQN HCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHEEECCCE LYVLDYKSSQNYQQSHKAQVSHYAEFLKTQAPHFKIQAGIIYAHKRLLEKLWV EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHCC >Mature Secondary Structure MDTKRQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYL CCCHHHHHEEECCCCCCCEEEHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHH KILQKENLENENKKEKSQNILKELEEKYHLDPSLVRNSAPKIYQRFLNAEIRISTIDAFF HHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHCCCCEEEHHHHHHH QSILRKFCWFVGLSANFEVNEDTKAHQQQLNDGFLSALNNEQLEELSVFIVQCLSYDSYT HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCC SDSILERLRFLKNKLYLFDSNKQEPVFDEEGFLEKLKSLNNQIQNIETASDRAKTAIKCD HHHHHHHHHHHHHCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SFRGFLNSSLTWLEKKSEYQSFKKLKSEIPTLESECEEIENDLKRYYEAKETAIFKKFPK HHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FIQLYDKATSKIQALDFDAIKDKVHVLLNGYEEMPAEFFYFRLDSKIAHILIDEFQDTSL HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHCCHHHEEHHHHHHHHHHHHHHHCCCCC NDYKILAPFIDEIKAGIGQAKWQRSVFFVGDVKQSIYAFRGSFSSLFESVSKDFYHDNLQ CCCEEHHHHHHHHHHCCCHHHHHCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC FNHRSAPLIINYVNTIFKKAYQNSPTAYLEQKYPKASNNKHVTEGYVKVSLVADERELLL CCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCEEECEEEEEEECCHHHHHH EQILQEAQNLLDHHIDPKDITILCATNDDALEVKNYLQEYLSEICPSTESSAKLSQFVES HHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH KIIKNALKYALAEEPYKPFYKHSVLKLAGYLHDDAIALPSFNPKKESVAGFVWKIMEQFK HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHH LYGEPAQSCLELAVGCEDANGFLEKLEAKSIASFNLKGAQIMTIHKSKGMQFPYVIVCER HCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHH LGKPNSSHANQLLEEYNGAELLRLYYRMKNREVVDKDYARALNKEEAAKDHEETNVYYVA HCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHCCCCCCCEEEEE FTRAELGLIVVAKDKDQKKDKKESKKESKNKGMREKLDLFPLEEGTIAPVISPQKEPLIA EEECCCCEEEEECCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCH SVLIKPHAYGEQVQEIEEEPSDYEKNNDQEAINFGIALHKGLEYQYAYNIPKKSVLEYLN HHEECCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHH YHHGFYGLDYQALEESLELFENDAEIQALFKNLPLKGEAAFLFEGVVSRIDVLLWDRGQN HCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHEEECCCE LYVLDYKSSQNYQQSHKAQVSHYAEFLKTQAPHFKIQAGIIYAHKRLLEKLWV EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA