Click here to switch to the map view.

The map label for this gene is lpp20 [H]

Identifier: 108563884

GI number: 108563884

Start: 1518011

End: 1518538

Strand: Direct

Name: lpp20 [H]

Synonym: HPAG1_1459

Alternate gene names: 108563884

Gene position: 1518011-1518538 (Clockwise)

Preceding gene: 108563883

Following gene: 108563885

Centisome position: 95.09

GC content: 39.96

Gene sequence:

>528_bases
ATGAAAAATCAAGTTAAAAAAATTTTAGGGATGAGTGTGATAGCAGCGATGGTGATCGTAGGTTGTAGCCATGCCCCAAA
ATCAGGTATCAGTAAAAGCAATAAGGCCTACAAAGAAGCGACTAAAGGCGCTCCTGATTGGGTTGTAGGGGATTTAGAAA
AAGTGGCGAAGTATGAAAAATATTCAGGGGTCTTTTTAGGAAGGGCTGAGGATTTGATCACCAATAATGATGTGGATTAT
TCTACGAATCAGGCTACAGCGAAGGCTAGGGCTAATTTAGCGGCGAATCTAAAATCCACTTTACAAAAAGATTTGGAAAA
TGAAAAAACTAGAACGGTAGACGCTTCTGGTAAAAGGTCCATAAGCGGCACTGATACTGAAAAAATTTCTCAATTAGTGG
ATAAGGAATTGATCGCTTCTAAAATGCTTGCCCGCTATGTCGGTAAAGATAGGGTTTTTGTTTTAGTGGGCTTGGATAAG
CAGATTGTGGATAAAGTGCGCGAAGAGTTGGGCATGGTTAAAAAGTAG

Upstream 100 bases:

>100_bases
ATAGGAAAACGGGTGAAGAGGTATGGAGCGATGTTAAGCCTATTGTGAAGAACGCTAGCAATAAGCGTATGTTTTAAATT
TATATTTGAAAGGATGAACG

Downstream 100 bases:

>100_bases
GGTTTTAATGAAACGCCTTGCTATCGCACTTGTTTTGGTGTTGGGAGTGGTATGGGGGAAGTCCTTGCCTAAGTGGGCAA
AAGATTGCTCAAAAGGAGTG

Product: membrane-associated lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MKNQVKKILGMSVIAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEKYSGVFLGRAEDLITNNDVDY
STNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRSISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDK
QIVDKVREELGMVKK

Sequences:

>Translated_175_residues
MKNQVKKILGMSVIAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEKYSGVFLGRAEDLITNNDVDY
STNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRSISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDK
QIVDKVREELGMVKK
>Mature_175_residues
MKNQVKKILGMSVIAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEKYSGVFLGRAEDLITNNDVDY
STNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRSISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDK
QIVDKVREELGMVKK

Specific function: Could play a role in the pathogenesis of H.pylori by serving as an inflammatory mediator [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002217 [H]

Pfam domain/function: PF02169 LPP20 [H]

EC number: NA

Molecular weight: Translated: 19122; Mature: 19122

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNQVKKILGMSVIAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHH
YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS
HCCEEECCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECCCCCCC
ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKNQVKKILGMSVIAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHH
YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS
HCCEEECCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECCCCCCC
ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]