Click here to switch to the map view.

The map label for this gene is 108563804

Identifier: 108563804

GI number: 108563804

Start: 1428703

End: 1430943

Strand: Direct

Name: 108563804

Synonym: HPAG1_1379

Alternate gene names: NA

Gene position: 1428703-1430943 (Clockwise)

Preceding gene: 108563803

Following gene: 108563806

Centisome position: 89.5

GC content: 42.66

Gene sequence:

>2241_bases
ATGTTAAAACTCGCTAGCAAAACGATTTGTTTGTCCCTAATCGGATCGTTCACCGCTTTAGAAGCCTACCAAAAACACCA
AAAAGACGGCTTTTTTATAGAAGCCGGGTTTGAAACCGGGCTATTACAAGGCACACAAACCCAAGAACAAACCATAGCCA
CCACTCAAGAAAAACCTAAACCCAAACCCAAGCCCAAACCCATTACCCCTCAAAGCACCTATGGGAAATACTACATCTCC
CAAAGCACCGTTTTAAAGAATGCGACTGAGTTGTTTGCAGAGGACAATATCACCAACTTAACCTTTTATTCTTTAACCCC
TGTGTATGTAACCGCTTATAACCAAGAAAGCGCTGAAGAAGCAGGCTATGGCGATAGCAGCTTGATTATGATACAAAACT
TCTTGCCTTATAATTTAAACAATATTGAACTGAGTTATACAGACAATCAAGGCAATGTAGTCAGTTTGGGCGTGATAGAG
ACTATCCCTAAACAATCTCAAATCATTCTGCCCGCAAGCTTGTTTAACGATCCGCAACTTAACACTGATGGCTTCCAACA
GCTCCAAACCAATACCACACGATTTTCTGATGCCAGCACGCAGAATCTGCTTGATAAGCTCAGTAGGGTTACGACCAATC
TTCAAATGACTTATATCAATTACAACCAATTTTCTAGCGGTAACGGCACTGGCTCTAAACCCCCATGCCCTCCATACGAA
AATCAAGAAAACTGCACGGCTAAAGTGCCGCCTTTCACCTCTCAAGACGCTAAGAATTTGACCAATTTAATGCTGAACAT
GATGGCGGTGTTTGATTCTAAATCTTGGGAAGATGCCATTAAAAACGCCCCCTTTCAGTTTAGCGACAACAACTTGTCAG
TGCCATGTTATTCTAATTATTCTACATGCGTGAATCCTTACAACGATGGGCTTGTTGATCCTAAATTGATCGCTAAAAAT
GCTGGAGATGAATACAATATAGAAAACGGGCAAACAGGCTCAGTGATATTAACGCCGCAAGACGTTATCTATAGCTATAG
AGTTACGAATAATCTTTATGTGAATCTCTTGCCCCCAAGAGGAGGGGATTTAGGGCTAGGGTCTCAATATGGCGGCCCCA
ATGGCCCAGGCGATGATGGCACCAATTTTGGCGCTTTAGGGATATTGTCTCCTTTCTTAGACCCTGAAATACTGTTTGGC
AAAGAATTGAATAAAGTCGCCATCATGCAATTAAGAGACATTATCCATGAATATGGGCACACTTTAGGCTATACGCATAA
CGGGAACATGACTTATCAAAGGGTGCGCATGTGTGAAGAAGGCAATGGGCCAGAAGAGCGCTGTAAGGGCGGGAAAATAG
AGCAAGTGGATGGGCAAGAAGTGCAAGTGTTTGACAACGGGCACGAAGTGCGAGACACCGATGGCTCTACCTATGATGTG
TGTTCTCGTTTTGGCGGCCAAAATCAGCCCGCTTTCCCTAGCAGTTACCCCAATTCCATTTATACTGATTGCTCTCAAGT
CCCCGCCGGGCTTATAGGCGTTACTAGTGCTGTTTGGCAGCAACTCATTGATCAAAACGCCCTACCGGTGGATTACACTA
ATTTGAGCAGCCAAACCAACTATTTGAACGCTAGTTTGAACACGCAAGATTTTGCGACCACTATGCTTAGCGCGATCAGT
CAAAGCCTTTCATCTACTAAATCTAGCGCCACTACCTACCGCACTTCAAAAACCTCACGGCCCTTTGGAGCCCCCCTATT
AGGCGTTAATCTTAAAATGGGCTATCAAAAATACTTTAATGATTACTTAGGGTTGTCTTCTTATGGCATTATCAAATACA
ACTACGCTCAAGCCAATAACGAAAAAATCCAACAATTAAGCTATGGTGTGGGAATGGATATGTTGTTTGATTTTATCACC
AACTACACTAACGAAAAGAACCCTAAAAACAATCTAACCAAGAAAGTTTTCACTTCCTCTCTTGGGGTGTTTGGGGGGTT
AAGAGGCTTATACAACAGCTATTATTTGTTGAACCAATACAAAGGGAGCGGTAATTTAAATGTAACCGGCGGATTGAATT
ACCGCTACAAACATTCTAAATATTCTGTAGGCATTAGCGTTCCTTTAGTCCAGTTGAAATCTAGAGTCGTTTCTAGCGAT
GGCGCAACCACCAATTCTATCACCCTGAATGAAGGGGGCAGCCATTTTAAAGTGTTTTTCAACTATGGGTGGATTTTCTA
G

Upstream 100 bases:

>100_bases
AAAAAAAAAAAAAAAAGGTAAAATAAGCTAGTTTAAAATATATGCATACTATAAACTACTTTTGAGTAAAAATGTTAAAA
AAGACCATTAAGGAGATTTT

Downstream 100 bases:

>100_bases
GGGTTAAAAATTGGCTTTAACTCTCTATTGGCCCTAAGAATTAAGAGCGAATTGCCAAATTTCATTAGCATCCTTAGGCT
TAAAGTTTTCAGTCGTATTA

Product: outer membrane protein HomD

Products: NA

Alternate protein names: Outer Membrane Protein HomB; Outer Membrane Protein HomD; Outer Membrane Protein HomA

Number of amino acids: Translated: 746; Mature: 746

Protein sequence:

>746_residues
MLKLASKTICLSLIGSFTALEAYQKHQKDGFFIEAGFETGLLQGTQTQEQTIATTQEKPKPKPKPKPITPQSTYGKYYIS
QSTVLKNATELFAEDNITNLTFYSLTPVYVTAYNQESAEEAGYGDSSLIMIQNFLPYNLNNIELSYTDNQGNVVSLGVIE
TIPKQSQIILPASLFNDPQLNTDGFQQLQTNTTRFSDASTQNLLDKLSRVTTNLQMTYINYNQFSSGNGTGSKPPCPPYE
NQENCTAKVPPFTSQDAKNLTNLMLNMMAVFDSKSWEDAIKNAPFQFSDNNLSVPCYSNYSTCVNPYNDGLVDPKLIAKN
AGDEYNIENGQTGSVILTPQDVIYSYRVTNNLYVNLLPPRGGDLGLGSQYGGPNGPGDDGTNFGALGILSPFLDPEILFG
KELNKVAIMQLRDIIHEYGHTLGYTHNGNMTYQRVRMCEEGNGPEERCKGGKIEQVDGQEVQVFDNGHEVRDTDGSTYDV
CSRFGGQNQPAFPSSYPNSIYTDCSQVPAGLIGVTSAVWQQLIDQNALPVDYTNLSSQTNYLNASLNTQDFATTMLSAIS
QSLSSTKSSATTYRTSKTSRPFGAPLLGVNLKMGYQKYFNDYLGLSSYGIIKYNYAQANNEKIQQLSYGVGMDMLFDFIT
NYTNEKNPKNNLTKKVFTSSLGVFGGLRGLYNSYYLLNQYKGSGNLNVTGGLNYRYKHSKYSVGISVPLVQLKSRVVSSD
GATTNSITLNEGGSHFKVFFNYGWIF

Sequences:

>Translated_746_residues
MLKLASKTICLSLIGSFTALEAYQKHQKDGFFIEAGFETGLLQGTQTQEQTIATTQEKPKPKPKPKPITPQSTYGKYYIS
QSTVLKNATELFAEDNITNLTFYSLTPVYVTAYNQESAEEAGYGDSSLIMIQNFLPYNLNNIELSYTDNQGNVVSLGVIE
TIPKQSQIILPASLFNDPQLNTDGFQQLQTNTTRFSDASTQNLLDKLSRVTTNLQMTYINYNQFSSGNGTGSKPPCPPYE
NQENCTAKVPPFTSQDAKNLTNLMLNMMAVFDSKSWEDAIKNAPFQFSDNNLSVPCYSNYSTCVNPYNDGLVDPKLIAKN
AGDEYNIENGQTGSVILTPQDVIYSYRVTNNLYVNLLPPRGGDLGLGSQYGGPNGPGDDGTNFGALGILSPFLDPEILFG
KELNKVAIMQLRDIIHEYGHTLGYTHNGNMTYQRVRMCEEGNGPEERCKGGKIEQVDGQEVQVFDNGHEVRDTDGSTYDV
CSRFGGQNQPAFPSSYPNSIYTDCSQVPAGLIGVTSAVWQQLIDQNALPVDYTNLSSQTNYLNASLNTQDFATTMLSAIS
QSLSSTKSSATTYRTSKTSRPFGAPLLGVNLKMGYQKYFNDYLGLSSYGIIKYNYAQANNEKIQQLSYGVGMDMLFDFIT
NYTNEKNPKNNLTKKVFTSSLGVFGGLRGLYNSYYLLNQYKGSGNLNVTGGLNYRYKHSKYSVGISVPLVQLKSRVVSSD
GATTNSITLNEGGSHFKVFFNYGWIF
>Mature_746_residues
MLKLASKTICLSLIGSFTALEAYQKHQKDGFFIEAGFETGLLQGTQTQEQTIATTQEKPKPKPKPKPITPQSTYGKYYIS
QSTVLKNATELFAEDNITNLTFYSLTPVYVTAYNQESAEEAGYGDSSLIMIQNFLPYNLNNIELSYTDNQGNVVSLGVIE
TIPKQSQIILPASLFNDPQLNTDGFQQLQTNTTRFSDASTQNLLDKLSRVTTNLQMTYINYNQFSSGNGTGSKPPCPPYE
NQENCTAKVPPFTSQDAKNLTNLMLNMMAVFDSKSWEDAIKNAPFQFSDNNLSVPCYSNYSTCVNPYNDGLVDPKLIAKN
AGDEYNIENGQTGSVILTPQDVIYSYRVTNNLYVNLLPPRGGDLGLGSQYGGPNGPGDDGTNFGALGILSPFLDPEILFG
KELNKVAIMQLRDIIHEYGHTLGYTHNGNMTYQRVRMCEEGNGPEERCKGGKIEQVDGQEVQVFDNGHEVRDTDGSTYDV
CSRFGGQNQPAFPSSYPNSIYTDCSQVPAGLIGVTSAVWQQLIDQNALPVDYTNLSSQTNYLNASLNTQDFATTMLSAIS
QSLSSTKSSATTYRTSKTSRPFGAPLLGVNLKMGYQKYFNDYLGLSSYGIIKYNYAQANNEKIQQLSYGVGMDMLFDFIT
NYTNEKNPKNNLTKKVFTSSLGVFGGLRGLYNSYYLLNQYKGSGNLNVTGGLNYRYKHSKYSVGISVPLVQLKSRVVSSD
GATTNSITLNEGGSHFKVFFNYGWIF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 82358; Mature: 82358

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKLASKTICLSLIGSFTALEAYQKHQKDGFFIEAGFETGLLQGTQTQEQTIATTQEKPK
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHCCCCCC
PKPKPKPITPQSTYGKYYISQSTVLKNATELFAEDNITNLTFYSLTPVYVTAYNQESAEE
CCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCEEEEEEECEEEEEEECCCCHHH
AGYGDSSLIMIQNFLPYNLNNIELSYTDNQGNVVSLGVIETIPKQSQIILPASLFNDPQL
CCCCCCEEEEEECCCCCCCCEEEEEEECCCCCEEEEEHHHCCCCCCEEEEEHHHCCCCCC
NTDGFQQLQTNTTRFSDASTQNLLDKLSRVTTNLQMTYINYNQFSSGNGTGSKPPCPPYE
CCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEECCEECCCCCCCCCCCCCCCC
NQENCTAKVPPFTSQDAKNLTNLMLNMMAVFDSKSWEDAIKNAPFQFSDNNLSVPCYSNY
CCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCEECCCCEEEEEECCC
STCVNPYNDGLVDPKLIAKNAGDEYNIENGQTGSVILTPQDVIYSYRVTNNLYVNLLPPR
CCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCEEEECCHHHEEEEEEECCEEEEEECCC
GGDLGLGSQYGGPNGPGDDGTNFGALGILSPFLDPEILFGKELNKVAIMQLRDIIHEYGH
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHCC
TLGYTHNGNMTYQRVRMCEEGNGPEERCKGGKIEQVDGQEVQVFDNGHEVRDTDGSTYDV
CCCEEECCCCHHHHHHHHHCCCCHHHHHCCCCEEECCCCEEEEEECCCEEECCCCCHHHH
CSRFGGQNQPAFPSSYPNSIYTDCSQVPAGLIGVTSAVWQQLIDQNALPVDYTNLSSQTN
HHHCCCCCCCCCCCCCCCHHHHCHHHCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCC
YLNASLNTQDFATTMLSAISQSLSSTKSSATTYRTSKTSRPFGAPLLGVNLKMGYQKYFN
EEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCEEEEEEEHHHHHHHH
DYLGLSSYGIIKYNYAQANNEKIQQLSYGVGMDMLFDFITNYTNEKNPKNNLTKKVFTSS
HHCCCCCCCEEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
LGVFGGLRGLYNSYYLLNQYKGSGNLNVTGGLNYRYKHSKYSVGISVPLVQLKSRVVSSD
HHHHHHHHHHHHCEEEEEEECCCCCEEEECCCCEEEECCEEEEEEECHHHHHHHHHHCCC
GATTNSITLNEGGSHFKVFFNYGWIF
CCCCCEEEECCCCCEEEEEEECCCCC
>Mature Secondary Structure
MLKLASKTICLSLIGSFTALEAYQKHQKDGFFIEAGFETGLLQGTQTQEQTIATTQEKPK
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHCCCCCC
PKPKPKPITPQSTYGKYYISQSTVLKNATELFAEDNITNLTFYSLTPVYVTAYNQESAEE
CCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCEEEEEEECEEEEEEECCCCHHH
AGYGDSSLIMIQNFLPYNLNNIELSYTDNQGNVVSLGVIETIPKQSQIILPASLFNDPQL
CCCCCCEEEEEECCCCCCCCEEEEEEECCCCCEEEEEHHHCCCCCCEEEEEHHHCCCCCC
NTDGFQQLQTNTTRFSDASTQNLLDKLSRVTTNLQMTYINYNQFSSGNGTGSKPPCPPYE
CCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEECCEECCCCCCCCCCCCCCCC
NQENCTAKVPPFTSQDAKNLTNLMLNMMAVFDSKSWEDAIKNAPFQFSDNNLSVPCYSNY
CCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCEECCCCEEEEEECCC
STCVNPYNDGLVDPKLIAKNAGDEYNIENGQTGSVILTPQDVIYSYRVTNNLYVNLLPPR
CCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCEEEECCHHHEEEEEEECCEEEEEECCC
GGDLGLGSQYGGPNGPGDDGTNFGALGILSPFLDPEILFGKELNKVAIMQLRDIIHEYGH
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHCC
TLGYTHNGNMTYQRVRMCEEGNGPEERCKGGKIEQVDGQEVQVFDNGHEVRDTDGSTYDV
CCCEEECCCCHHHHHHHHHCCCCHHHHHCCCCEEECCCCEEEEEECCCEEECCCCCHHHH
CSRFGGQNQPAFPSSYPNSIYTDCSQVPAGLIGVTSAVWQQLIDQNALPVDYTNLSSQTN
HHHCCCCCCCCCCCCCCCHHHHCHHHCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCC
YLNASLNTQDFATTMLSAISQSLSSTKSSATTYRTSKTSRPFGAPLLGVNLKMGYQKYFN
EEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCEEEEEEEHHHHHHHH
DYLGLSSYGIIKYNYAQANNEKIQQLSYGVGMDMLFDFITNYTNEKNPKNNLTKKVFTSS
HHCCCCCCCEEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
LGVFGGLRGLYNSYYLLNQYKGSGNLNVTGGLNYRYKHSKYSVGISVPLVQLKSRVVSSD
HHHHHHHHHHHHCEEEEEEECCCCCEEEECCCCEEEECCEEEEEEECHHHHHHHHHHCCC
GATTNSITLNEGGSHFKVFFNYGWIF
CCCCCEEEECCCCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA