| Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
|---|---|
| Accession | NC_008086 |
| Length | 1,596,366 |
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The map label for this gene is 108563789
Identifier: 108563789
GI number: 108563789
Start: 1415832
End: 1416953
Strand: Direct
Name: 108563789
Synonym: HPAG1_1364
Alternate gene names: NA
Gene position: 1415832-1416953 (Clockwise)
Preceding gene: 108563788
Following gene: 108563790
Centisome position: 88.69
GC content: 32.8
Gene sequence:
>1122_bases TTGGCGCTGTATTTAGTGGGCTGTGGGGGTGGTGAATCGCCGGTTGAAATGGTTGATTATGGAAGCCAACTGCAAATAAA CTCTAAGGTAGATAGCGTTACTCTTGAAAATCTCAATCTTAATCGTGGGAATTGTGAATATTCCACCTTACAAGTCCCTG TAAGTTTAGAAAGGCTCATACAAGAAAAAGAGAAATCCGAAAACGCCAAACAAAGCCTTGAGAAATACTCAAACGAAACC CAACAAGCAATTGCCCTTAAGCAACAATCCCTAAAAGAATTTGAAGACAAAATGAAAGAATTGGACACCATTGAAAAATT CTATGGTTGGAATTTCAACACAGAGAATAAACTTAAAACCCTGGATGAAAATTCTAAACAATACATACAATTACAACAAC AAAGAACTTTTATTTTTGACCATCTCAAAAAATCACTTTCAAGTGAAGCGTCTTATTATATTAATAATGATACACTCAAG TTCTTTTATTACCTTCAAAAAGATATTAAAAATATATTTACTGCAAATATGAGCGGAATTAAAAAGGATATTGTAAGAAA AGAGGGACAATGCTTGGAAGGATCACAAGGGATTGATAAGTATACATACCTTGTTTGGTGTTCTTATTATCTTGGTATCA ATGATGGTGATTCTGTAGACTTGAATGAAAGGATAAAGTTAGAGCTAGAAATCTTAAAAGGCTATGCTGACTCCATCAAT AACCAAGAAATTTCCAAAATAGCATCAGATCTTATTGCAAGCTATGGCAAAATAGATAGATTCAAATTTAATCCATCCTT TATAAGATCTGTAAATGAAAAATTACCCACTATAACCAACTTTATTTTTAAAGAAATTGTGAGCAGTGCTCCAGAAAAAC TTAAGGTAATAACAGATAAGGAGTTACAACCTTTGACAGAAAACTTGCAAAAATACCAAGCTAGTTTAAGTGAGACAACA AATAAGATCCAATGGATAAAACAAAAAGTCAAAGAATTGCAAGATAAACATATCCCTATGCAACAAGAATTGAAATTTGG GAATTCTGTAGTAATCTCTTATAGATGCTCAAAACTTTTGGAAGCCGAACTCCAAACCAACAAAGGCACTTACAAAATTT AA
Upstream 100 bases:
>100_bases TTTTGAGACCATAACCCTTAAAAAACTATCACAACAAATCAATTCGTAGGAGCAAACATGTTTTTTTAAAACTTACCAAA AATTACTGGGTGCAAGCTGT
Downstream 100 bases:
>100_bases TTTTGAGAAAAAATAAGCCTTAAACATGGAAAATACCCCAAAAGACAGAGCAAAAATCCTTATAGAAGAGCTTAAAATCT TGCAAGGCATTATCAACAGA
Product: lipoprotein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 373; Mature: 372
Protein sequence:
>373_residues MALYLVGCGGGESPVEMVDYGSQLQINSKVDSVTLENLNLNRGNCEYSTLQVPVSLERLIQEKEKSENAKQSLEKYSNET QQAIALKQQSLKEFEDKMKELDTIEKFYGWNFNTENKLKTLDENSKQYIQLQQQRTFIFDHLKKSLSSEASYYINNDTLK FFYYLQKDIKNIFTANMSGIKKDIVRKEGQCLEGSQGIDKYTYLVWCSYYLGINDGDSVDLNERIKLELEILKGYADSIN NQEISKIASDLIASYGKIDRFKFNPSFIRSVNEKLPTITNFIFKEIVSSAPEKLKVITDKELQPLTENLQKYQASLSETT NKIQWIKQKVKELQDKHIPMQQELKFGNSVVISYRCSKLLEAELQTNKGTYKI
Sequences:
>Translated_373_residues MALYLVGCGGGESPVEMVDYGSQLQINSKVDSVTLENLNLNRGNCEYSTLQVPVSLERLIQEKEKSENAKQSLEKYSNET QQAIALKQQSLKEFEDKMKELDTIEKFYGWNFNTENKLKTLDENSKQYIQLQQQRTFIFDHLKKSLSSEASYYINNDTLK FFYYLQKDIKNIFTANMSGIKKDIVRKEGQCLEGSQGIDKYTYLVWCSYYLGINDGDSVDLNERIKLELEILKGYADSIN NQEISKIASDLIASYGKIDRFKFNPSFIRSVNEKLPTITNFIFKEIVSSAPEKLKVITDKELQPLTENLQKYQASLSETT NKIQWIKQKVKELQDKHIPMQQELKFGNSVVISYRCSKLLEAELQTNKGTYKI >Mature_372_residues ALYLVGCGGGESPVEMVDYGSQLQINSKVDSVTLENLNLNRGNCEYSTLQVPVSLERLIQEKEKSENAKQSLEKYSNETQ QAIALKQQSLKEFEDKMKELDTIEKFYGWNFNTENKLKTLDENSKQYIQLQQQRTFIFDHLKKSLSSEASYYINNDTLKF FYYLQKDIKNIFTANMSGIKKDIVRKEGQCLEGSQGIDKYTYLVWCSYYLGINDGDSVDLNERIKLELEILKGYADSINN QEISKIASDLIASYGKIDRFKFNPSFIRSVNEKLPTITNFIFKEIVSSAPEKLKVITDKELQPLTENLQKYQASLSETTN KIQWIKQKVKELQDKHIPMQQELKFGNSVVISYRCSKLLEAELQTNKGTYKI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43078; Mature: 42947
Theoretical pI: Translated: 6.57; Mature: 6.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALYLVGCGGGESPVEMVDYGSQLQINSKVDSVTLENLNLNRGNCEYSTLQVPVSLERLI CEEEEEECCCCCCCHHHHCCCCCEEECCCCCEEEEECCCCCCCCCCEEEEECCHHHHHHH QEKEKSENAKQSLEKYSNETQQAIALKQQSLKEFEDKMKELDTIEKFYGWNFNTENKLKT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH LDENSKQYIQLQQQRTFIFDHLKKSLSSEASYYINNDTLKFFYYLQKDIKNIFTANMSGI HCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHH KKDIVRKEGQCLEGSQGIDKYTYLVWCSYYLGINDGDSVDLNERIKLELEILKGYADSIN HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC NQEISKIASDLIASYGKIDRFKFNPSFIRSVNEKLPTITNFIFKEIVSSAPEKLKVITDK HHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHCHHHHHHHHHHHHHCCCHHEEEECCC ELQPLTENLQKYQASLSETTNKIQWIKQKVKELQDKHIPMQQELKFGNSVVISYRCSKLL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEEHHHHHHH EAELQTNKGTYKI HHHHHCCCCCCCC >Mature Secondary Structure ALYLVGCGGGESPVEMVDYGSQLQINSKVDSVTLENLNLNRGNCEYSTLQVPVSLERLI EEEEEECCCCCCCHHHHCCCCCEEECCCCCEEEEECCCCCCCCCCEEEEECCHHHHHHH QEKEKSENAKQSLEKYSNETQQAIALKQQSLKEFEDKMKELDTIEKFYGWNFNTENKLKT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH LDENSKQYIQLQQQRTFIFDHLKKSLSSEASYYINNDTLKFFYYLQKDIKNIFTANMSGI HCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHH KKDIVRKEGQCLEGSQGIDKYTYLVWCSYYLGINDGDSVDLNERIKLELEILKGYADSIN HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC NQEISKIASDLIASYGKIDRFKFNPSFIRSVNEKLPTITNFIFKEIVSSAPEKLKVITDK HHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHCHHHHHHHHHHHHHCCCHHEEEECCC ELQPLTENLQKYQASLSETTNKIQWIKQKVKELQDKHIPMQQELKFGNSVVISYRCSKLL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEEHHHHHHH EAELQTNKGTYKI HHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA