Definition Helicobacter pylori HPAG1 chromosome, complete genome.
Accession NC_008086
Length 1,596,366

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The map label for this gene is 108563789

Identifier: 108563789

GI number: 108563789

Start: 1415832

End: 1416953

Strand: Direct

Name: 108563789

Synonym: HPAG1_1364

Alternate gene names: NA

Gene position: 1415832-1416953 (Clockwise)

Preceding gene: 108563788

Following gene: 108563790

Centisome position: 88.69

GC content: 32.8

Gene sequence:

>1122_bases
TTGGCGCTGTATTTAGTGGGCTGTGGGGGTGGTGAATCGCCGGTTGAAATGGTTGATTATGGAAGCCAACTGCAAATAAA
CTCTAAGGTAGATAGCGTTACTCTTGAAAATCTCAATCTTAATCGTGGGAATTGTGAATATTCCACCTTACAAGTCCCTG
TAAGTTTAGAAAGGCTCATACAAGAAAAAGAGAAATCCGAAAACGCCAAACAAAGCCTTGAGAAATACTCAAACGAAACC
CAACAAGCAATTGCCCTTAAGCAACAATCCCTAAAAGAATTTGAAGACAAAATGAAAGAATTGGACACCATTGAAAAATT
CTATGGTTGGAATTTCAACACAGAGAATAAACTTAAAACCCTGGATGAAAATTCTAAACAATACATACAATTACAACAAC
AAAGAACTTTTATTTTTGACCATCTCAAAAAATCACTTTCAAGTGAAGCGTCTTATTATATTAATAATGATACACTCAAG
TTCTTTTATTACCTTCAAAAAGATATTAAAAATATATTTACTGCAAATATGAGCGGAATTAAAAAGGATATTGTAAGAAA
AGAGGGACAATGCTTGGAAGGATCACAAGGGATTGATAAGTATACATACCTTGTTTGGTGTTCTTATTATCTTGGTATCA
ATGATGGTGATTCTGTAGACTTGAATGAAAGGATAAAGTTAGAGCTAGAAATCTTAAAAGGCTATGCTGACTCCATCAAT
AACCAAGAAATTTCCAAAATAGCATCAGATCTTATTGCAAGCTATGGCAAAATAGATAGATTCAAATTTAATCCATCCTT
TATAAGATCTGTAAATGAAAAATTACCCACTATAACCAACTTTATTTTTAAAGAAATTGTGAGCAGTGCTCCAGAAAAAC
TTAAGGTAATAACAGATAAGGAGTTACAACCTTTGACAGAAAACTTGCAAAAATACCAAGCTAGTTTAAGTGAGACAACA
AATAAGATCCAATGGATAAAACAAAAAGTCAAAGAATTGCAAGATAAACATATCCCTATGCAACAAGAATTGAAATTTGG
GAATTCTGTAGTAATCTCTTATAGATGCTCAAAACTTTTGGAAGCCGAACTCCAAACCAACAAAGGCACTTACAAAATTT
AA

Upstream 100 bases:

>100_bases
TTTTGAGACCATAACCCTTAAAAAACTATCACAACAAATCAATTCGTAGGAGCAAACATGTTTTTTTAAAACTTACCAAA
AATTACTGGGTGCAAGCTGT

Downstream 100 bases:

>100_bases
TTTTGAGAAAAAATAAGCCTTAAACATGGAAAATACCCCAAAAGACAGAGCAAAAATCCTTATAGAAGAGCTTAAAATCT
TGCAAGGCATTATCAACAGA

Product: lipoprotein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 373; Mature: 372

Protein sequence:

>373_residues
MALYLVGCGGGESPVEMVDYGSQLQINSKVDSVTLENLNLNRGNCEYSTLQVPVSLERLIQEKEKSENAKQSLEKYSNET
QQAIALKQQSLKEFEDKMKELDTIEKFYGWNFNTENKLKTLDENSKQYIQLQQQRTFIFDHLKKSLSSEASYYINNDTLK
FFYYLQKDIKNIFTANMSGIKKDIVRKEGQCLEGSQGIDKYTYLVWCSYYLGINDGDSVDLNERIKLELEILKGYADSIN
NQEISKIASDLIASYGKIDRFKFNPSFIRSVNEKLPTITNFIFKEIVSSAPEKLKVITDKELQPLTENLQKYQASLSETT
NKIQWIKQKVKELQDKHIPMQQELKFGNSVVISYRCSKLLEAELQTNKGTYKI

Sequences:

>Translated_373_residues
MALYLVGCGGGESPVEMVDYGSQLQINSKVDSVTLENLNLNRGNCEYSTLQVPVSLERLIQEKEKSENAKQSLEKYSNET
QQAIALKQQSLKEFEDKMKELDTIEKFYGWNFNTENKLKTLDENSKQYIQLQQQRTFIFDHLKKSLSSEASYYINNDTLK
FFYYLQKDIKNIFTANMSGIKKDIVRKEGQCLEGSQGIDKYTYLVWCSYYLGINDGDSVDLNERIKLELEILKGYADSIN
NQEISKIASDLIASYGKIDRFKFNPSFIRSVNEKLPTITNFIFKEIVSSAPEKLKVITDKELQPLTENLQKYQASLSETT
NKIQWIKQKVKELQDKHIPMQQELKFGNSVVISYRCSKLLEAELQTNKGTYKI
>Mature_372_residues
ALYLVGCGGGESPVEMVDYGSQLQINSKVDSVTLENLNLNRGNCEYSTLQVPVSLERLIQEKEKSENAKQSLEKYSNETQ
QAIALKQQSLKEFEDKMKELDTIEKFYGWNFNTENKLKTLDENSKQYIQLQQQRTFIFDHLKKSLSSEASYYINNDTLKF
FYYLQKDIKNIFTANMSGIKKDIVRKEGQCLEGSQGIDKYTYLVWCSYYLGINDGDSVDLNERIKLELEILKGYADSINN
QEISKIASDLIASYGKIDRFKFNPSFIRSVNEKLPTITNFIFKEIVSSAPEKLKVITDKELQPLTENLQKYQASLSETTN
KIQWIKQKVKELQDKHIPMQQELKFGNSVVISYRCSKLLEAELQTNKGTYKI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43078; Mature: 42947

Theoretical pI: Translated: 6.57; Mature: 6.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALYLVGCGGGESPVEMVDYGSQLQINSKVDSVTLENLNLNRGNCEYSTLQVPVSLERLI
CEEEEEECCCCCCCHHHHCCCCCEEECCCCCEEEEECCCCCCCCCCEEEEECCHHHHHHH
QEKEKSENAKQSLEKYSNETQQAIALKQQSLKEFEDKMKELDTIEKFYGWNFNTENKLKT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
LDENSKQYIQLQQQRTFIFDHLKKSLSSEASYYINNDTLKFFYYLQKDIKNIFTANMSGI
HCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHH
KKDIVRKEGQCLEGSQGIDKYTYLVWCSYYLGINDGDSVDLNERIKLELEILKGYADSIN
HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
NQEISKIASDLIASYGKIDRFKFNPSFIRSVNEKLPTITNFIFKEIVSSAPEKLKVITDK
HHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHCHHHHHHHHHHHHHCCCHHEEEECCC
ELQPLTENLQKYQASLSETTNKIQWIKQKVKELQDKHIPMQQELKFGNSVVISYRCSKLL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEEHHHHHHH
EAELQTNKGTYKI
HHHHHCCCCCCCC
>Mature Secondary Structure 
ALYLVGCGGGESPVEMVDYGSQLQINSKVDSVTLENLNLNRGNCEYSTLQVPVSLERLI
EEEEEECCCCCCCHHHHCCCCCEEECCCCCEEEEECCCCCCCCCCEEEEECCHHHHHHH
QEKEKSENAKQSLEKYSNETQQAIALKQQSLKEFEDKMKELDTIEKFYGWNFNTENKLKT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
LDENSKQYIQLQQQRTFIFDHLKKSLSSEASYYINNDTLKFFYYLQKDIKNIFTANMSGI
HCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHH
KKDIVRKEGQCLEGSQGIDKYTYLVWCSYYLGINDGDSVDLNERIKLELEILKGYADSIN
HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
NQEISKIASDLIASYGKIDRFKFNPSFIRSVNEKLPTITNFIFKEIVSSAPEKLKVITDK
HHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHCHHHHHHHHHHHHHCCCHHEEEECCC
ELQPLTENLQKYQASLSETTNKIQWIKQKVKELQDKHIPMQQELKFGNSVVISYRCSKLL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEEHHHHHHH
EAELQTNKGTYKI
HHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA