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The map label for this gene is 108563774

Identifier: 108563774

GI number: 108563774

Start: 1401435

End: 1401692

Strand: Reverse

Name: 108563774

Synonym: HPAG1_1349

Alternate gene names: NA

Gene position: 1401692-1401435 (Counterclockwise)

Preceding gene: 108563776

Following gene: 108563773

Centisome position: 87.81

GC content: 40.7

Gene sequence:

>258_bases
ATGCGAATAGACAAATTTTTACAATCAGTGGGTTTAGTGAAGCGGCGCGTTTTAGCGACAGATATGTGCAATGTGGGGGC
GGTGTGGCTTAATGGGAGTTGCGCTAAGGCTAGTAAAGAAGTGAAAATAGGCGATGTGATTAGCTTGCACTATTTAAAAG
GGGTAGAAGAATACACGATTTTACAAATCCCCACTTTAAAAAATGTGCCGCGAAAAGACACGCATCTTTACATCGCTCCT
AAAACAAAAGAATCATAA

Upstream 100 bases:

>100_bases
CAAATTCCTTAAAAAGAGTGGTGGCTGAATGCTAACATGCTAAAACTAAAACCCTTATAAGTTATGGATAAAAACTTAAA
GAATAGGGTAAAATAAACGC

Downstream 100 bases:

>100_bases
GATAAAAGACCAAGGATCAATCAGTGGAAGAATACAAAGACACCCTAAACTTAAACACAACCACCTTTTCTATGAAAGGG
AATTTGAGCGTTAATGAGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 85; Mature: 85

Protein sequence:

>85_residues
MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAKASKEVKIGDVISLHYLKGVEEYTILQIPTLKNVPRKDTHLYIAP
KTKES

Sequences:

>Translated_85_residues
MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAKASKEVKIGDVISLHYLKGVEEYTILQIPTLKNVPRKDTHLYIAP
KTKES
>Mature_85_residues
MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAKASKEVKIGDVISLHYLKGVEEYTILQIPTLKNVPRKDTHLYIAP
KTKES

Specific function: Unknown

COG id: COG1188

COG function: function code J; Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 9528; Mature: 9528

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAKASKEVKIGDVISLHYLKGVEEYTI
CCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEHHHCCCCCEEE
LQIPTLKNVPRKDTHLYIAPKTKES
EECCCCCCCCCCCCEEEEECCCCCC
>Mature Secondary Structure
MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAKASKEVKIGDVISLHYLKGVEEYTI
CCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEHHHCCCCCEEE
LQIPTLKNVPRKDTHLYIAPKTKES
EECCCCCCCCCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9252185 [H]