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The map label for this gene is trbB [H]

Identifier: 108563772

GI number: 108563772

Start: 1397718

End: 1398632

Strand: Reverse

Name: trbB [H]

Synonym: HPAG1_1347

Alternate gene names: 108563772

Gene position: 1398632-1397718 (Counterclockwise)

Preceding gene: 108563773

Following gene: 108563771

Centisome position: 87.61

GC content: 43.5

Gene sequence:

>915_bases
TTGGAAACTTTACAAACCCATAGAGTTTTACAAGCCCTAATTGGCCATTTTACCCCTTTTTTAGAAAGCGGGATCACAGA
GCTAATCATCAATACCGAGCAGGAGCTTTGGCTTTATAAAGCCAATAACACCCGAGAAAAAAGAGGGCATGCGCTTTTTG
ATAAGGCGTTTTTGCTGAGGTTTTGCGAGCAATTGGCTAGTTTTAGGGGGTTGTTTTTTGATGAAGAGCACCCCACTTTA
AATTGCTCTATCCCTTTCACGCGCTATAGGGTGAGCGCGAATCACTTTAGCATCACCACGAACCATCAAATCACGCTCAA
TATCCGTGTGCCTAGGCTTAAGCCCTTAAGTTTAGACGATTTCACTTTCAAAGCAAGCGATCCAAAAGGTTTGAAAGATT
TAGCGCTTAAAGGGCATAACATCCTCATTAGCGGGGAGACTTCAAGCGGTAAAACAAGCTTACTAAACGCTCTTTTAGAT
TGCGTCAATAAAGACGAAAGGGTGGTGAGCGTTGAAGACAGCCAAGAATTGGATTTAAAAGCGTTTAGTAATTGCGTGGG
GCTTTTAGTGGGCAAGCAAGAGAACACGCGCTTTAATTATGAAGACGCTCTCAATATGGCCATGCGCTTAAACCCGGACA
GGCTCATTGTGGGCGAGATTGACACCAGGAATGCAGCGCTCTTTTTGCGTTTAGGAAACACCGGGCATAAGGGCATGCTC
TCAACCATTCATGCTAATAGCGCTCAAAACACTTTGGAAGCCCTTTCACTGAATTTAAGCATGCGTTATACGCATTCTTT
AGATAAGGATTTGATGCGAGCGTATTTTAAGAGCGCGATTGATGTGATCGTGCATGTGAATAGGATCAACAATGAGCGCC
AAATCGCTGAAGTCTTATGGACTAAAGAGCTTTAA

Upstream 100 bases:

>100_bases
AAATGCCCCAGGTGTTGGCGTTTTAAAAGCGAGCTAGAAAACACCCCTTGCAAGCGTTGCGAAGAGGTTTTAAAAGAGCG
ATGATAAAAGGATAGGGCTT

Downstream 100 bases:

>100_bases
ATGCCCCTAAAATCCTTAAAAAACCGCTTGAATCAGCATTTTGAACTATCGCCTCGCTACGGGAGCGTGAAAAAAATCAT
GCCCAATATCGTTTATGCGG

Product: type IV secretion system ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
METLQTHRVLQALIGHFTPFLESGITELIINTEQELWLYKANNTREKRGHALFDKAFLLRFCEQLASFRGLFFDEEHPTL
NCSIPFTRYRVSANHFSITTNHQITLNIRVPRLKPLSLDDFTFKASDPKGLKDLALKGHNILISGETSSGKTSLLNALLD
CVNKDERVVSVEDSQELDLKAFSNCVGLLVGKQENTRFNYEDALNMAMRLNPDRLIVGEIDTRNAALFLRLGNTGHKGML
STIHANSAQNTLEALSLNLSMRYTHSLDKDLMRAYFKSAIDVIVHVNRINNERQIAEVLWTKEL

Sequences:

>Translated_304_residues
METLQTHRVLQALIGHFTPFLESGITELIINTEQELWLYKANNTREKRGHALFDKAFLLRFCEQLASFRGLFFDEEHPTL
NCSIPFTRYRVSANHFSITTNHQITLNIRVPRLKPLSLDDFTFKASDPKGLKDLALKGHNILISGETSSGKTSLLNALLD
CVNKDERVVSVEDSQELDLKAFSNCVGLLVGKQENTRFNYEDALNMAMRLNPDRLIVGEIDTRNAALFLRLGNTGHKGML
STIHANSAQNTLEALSLNLSMRYTHSLDKDLMRAYFKSAIDVIVHVNRINNERQIAEVLWTKEL
>Mature_304_residues
METLQTHRVLQALIGHFTPFLESGITELIINTEQELWLYKANNTREKRGHALFDKAFLLRFCEQLASFRGLFFDEEHPTL
NCSIPFTRYRVSANHFSITTNHQITLNIRVPRLKPLSLDDFTFKASDPKGLKDLALKGHNILISGETSSGKTSLLNALLD
CVNKDERVVSVEDSQELDLKAFSNCVGLLVGKQENTRFNYEDALNMAMRLNPDRLIVGEIDTRNAALFLRLGNTGHKGML
STIHANSAQNTLEALSLNLSMRYTHSLDKDLMRAYFKSAIDVIVHVNRINNERQIAEVLWTKEL

Specific function: Involved In A General Secretion Pathway (Gsp) For The Export Of Proteins (By Similarity). [C]

COG id: COG0630

COG function: function code NU; Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

Organism=Escherichia coli, GI1789723, Length=145, Percent_Identity=35.1724137931034, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786296, Length=144, Percent_Identity=31.9444444444444, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014149
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 34545; Mature: 34545

Theoretical pI: Translated: 7.36; Mature: 7.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METLQTHRVLQALIGHFTPFLESGITELIINTEQELWLYKANNTREKRGHALFDKAFLLR
CCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEECCCCHHHCCHHHHHHHHHHH
FCEQLASFRGLFFDEEHPTLNCSIPFTRYRVSANHFSITTNHQITLNIRVPRLKPLSLDD
HHHHHHHHCCCEECCCCCEEEEECCCEEEEEECCEEEEEECCEEEEEEECCCCCCCCCCC
FTFKASDPKGLKDLALKGHNILISGETSSGKTSLLNALLDCVNKDERVVSVEDSQELDLK
EEEECCCCCCCHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHH
AFSNCVGLLVGKQENTRFNYEDALNMAMRLNPDRLIVGEIDTRNAALFLRLGNTGHKGML
HHHHHHEEEEECCCCCCCCHHHHHHHHEEECCCEEEEEECCCCCEEEEEEECCCCCCCCE
STIHANSAQNTLEALSLNLSMRYTHSLDKDLMRAYFKSAIDVIVHVNRINNERQIAEVLW
EEEECCCHHHHHHHHEEEEEEEEHHHCCHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHH
TKEL
HCCC
>Mature Secondary Structure
METLQTHRVLQALIGHFTPFLESGITELIINTEQELWLYKANNTREKRGHALFDKAFLLR
CCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEECCCCHHHCCHHHHHHHHHHH
FCEQLASFRGLFFDEEHPTLNCSIPFTRYRVSANHFSITTNHQITLNIRVPRLKPLSLDD
HHHHHHHHCCCEECCCCCEEEEECCCEEEEEECCEEEEEECCEEEEEEECCCCCCCCCCC
FTFKASDPKGLKDLALKGHNILISGETSSGKTSLLNALLDCVNKDERVVSVEDSQELDLK
EEEECCCCCCCHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHH
AFSNCVGLLVGKQENTRFNYEDALNMAMRLNPDRLIVGEIDTRNAALFLRLGNTGHKGML
HHHHHHEEEEECCCCCCCCHHHHHHHHEEECCCEEEEEECCCCCEEEEEEECCCCCCCCE
STIHANSAQNTLEALSLNLSMRYTHSLDKDLMRAYFKSAIDVIVHVNRINNERQIAEVLW
EEEECCCHHHHHHHHEEEEEEEEHHHCCHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHH
TKEL
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]