| Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
|---|---|
| Accession | NC_008086 |
| Length | 1,596,366 |
Click here to switch to the map view.
The map label for this gene is 108563761
Identifier: 108563761
GI number: 108563761
Start: 1387792
End: 1389624
Strand: Direct
Name: 108563761
Synonym: HPAG1_1336
Alternate gene names: NA
Gene position: 1387792-1389624 (Clockwise)
Preceding gene: 108563760
Following gene: 108563762
Centisome position: 86.93
GC content: 37.32
Gene sequence:
>1833_bases ATGAAATTGTTGGATTTAGATGGAGTGATTGAAAAAGGCGTGTTTGAAATCCCCAGCTATCAAAGGGGGTATGCATGGCA AGAAAGGCAATTAAAGGATTTTTGGAACGATTTAGAGCATGTGTCCAAGCTGGGAGATAAATTCCACTACATGCACAGCT TAACTTTAAGAGAGCTTGAAAATGATTTTGAAAATAGCGCTTTTGAAATCATAGACGGCCAGCAACGATTGGCTACAAGC CTGATTTTACTAGGCCTTTTAGCAAAAACCACCCAAAACAAAGACCCAAAGTATTCTTTCATCAACCTTGAACCCATTTT ATCCTATAAGTATTATGGTTTGAGTGAAGCTTTTAGGGCGATCACTGAAGAAGAAAAAGATTTAAAAGCGTTCAAAACTT CTTTTTACGCCAAAAATTTGATTGACGCTTATACATTTTTTAAAGAAAAAATCAGCGATACGCCTGTTGGAACGCTTGAA AGAATGTTTGATGCTCTCACTAAAAAAATGCTTTTTAGCGTGGTGGGATTGAACGATAACCGAATCGATCCTTTCAGCTC TTTTGAAACGATTAACAATCGTGGCAAGGATCTATCCACTTTGGAATTGTTCAAAAACCGCCTGCATTTTGTGGCGCACA AGATCTGTGATGAAAAAGAAGAGTTAGAAAATCTTCAAAAAAAGATCAATGACACCTACGCTATTATTTATCACGATTTG AGGCAGTTTGAAGACACTCATTTAGATGGCTTTTTAAAGCATTTCGTGGAGTATTATTATGGCGAGAAAGGGGATTTTAA AAAGAGGTTATTGGAGATGGAGTTTAACGCTCATCAAAGATATACCGACAACACCAACTTTAATGAGGAATATGAAAAAA TAGATGATTTGTTGTTTTATCTTTCTTATTCTTCTAAAGTTTGGAATTTCTTGCACACGCTTGATGAAAAATCTATCACC CTTATTGTTGATGACAATAAAAAACTTGAGATTGAAATCACGCCTAAAATGCGCAACTTGTTAGAAAAGATGCGACGACT AAACGCTTTGAGCGAAAACGCTTTTTTACCCTTATTGCTCTCTCTTTTAACCATACAGCTTGTTGGAAGAAGCGCTAATG AACAGCCTTATACCACCCAAGAATTAGAGGGCTTATTAGAGTATTTAGAGCGTTTCGGGTTTTTAGTCTATGGGGTTGCT GGCAAGAATACGGCTAAACATGAATGGATTGAATTGGCTTTTATAGCGTTCAGAGCGTTCAGATATGGGGAAGAAAATAT CGCCATTGAAGATCTTCCAACGCTAGAAAAGAGTTTTTTCAAGGGCAAGTATAGCGGCTTGGAATTGCTTGAAGAGAGTA TCCATTCCAAAAAGAATACTGAAAAATGGTATCAGTGGGGCAAGGCATTGAATTACTTGCTTTATGAATACGAGTTGCAC CATAACCCTGAAACGACTCTGAATTTTGATAGCAGTATAGAAAGCATTGAGCATATCTTGCCCCAAAATCCCGATCAAGG CTATAGCGCTAAAGAAAAAAGTTGGGCTAAAAACCCTAACATCGTGCATGCTTTAGGGAACTTGCTCTTAATCCCTAAAA ACGCTAACAGCTCTTTAAGCAACAAGCCTTTTGAGGAAAAAAGAAAGCAATACCTCAAAGGCTCTTATAGCGAAAAAGAA GTGGCTAAAAACGCTTCTTTTGGAGTCGCGCAAATCAAAGAAAGGAGCGAAAAATTATTAGAATTTTTAATCGCGCATTA TCGTATCGCTGAATTGGTGGGTGAAAGCGCCATTAAAGCTTTTAAAAACGCTCTTTTAAAAGAGATCAAATGA
Upstream 100 bases:
>100_bases TTCACGCACAGCACTAGGCTTGGGCAACCAAAATTGATTGAGCGAAAAAATTAAGGGTTATGGTTTTTACCCATAAGCCC ATCATTAAGAAAGGATTTTA
Downstream 100 bases:
>100_bases TGCGATCACTTAAAAATAAGGGGGCGTTTAAAAAACACCCACCCCACAACAAGGAGGAACAAGCCATGCCAAAAAGATAA AAACATTAAAAAAACATTGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 610; Mature: 610
Protein sequence:
>610_residues MKLLDLDGVIEKGVFEIPSYQRGYAWQERQLKDFWNDLEHVSKLGDKFHYMHSLTLRELENDFENSAFEIIDGQQRLATS LILLGLLAKTTQNKDPKYSFINLEPILSYKYYGLSEAFRAITEEEKDLKAFKTSFYAKNLIDAYTFFKEKISDTPVGTLE RMFDALTKKMLFSVVGLNDNRIDPFSSFETINNRGKDLSTLELFKNRLHFVAHKICDEKEELENLQKKINDTYAIIYHDL RQFEDTHLDGFLKHFVEYYYGEKGDFKKRLLEMEFNAHQRYTDNTNFNEEYEKIDDLLFYLSYSSKVWNFLHTLDEKSIT LIVDDNKKLEIEITPKMRNLLEKMRRLNALSENAFLPLLLSLLTIQLVGRSANEQPYTTQELEGLLEYLERFGFLVYGVA GKNTAKHEWIELAFIAFRAFRYGEENIAIEDLPTLEKSFFKGKYSGLELLEESIHSKKNTEKWYQWGKALNYLLYEYELH HNPETTLNFDSSIESIEHILPQNPDQGYSAKEKSWAKNPNIVHALGNLLLIPKNANSSLSNKPFEEKRKQYLKGSYSEKE VAKNASFGVAQIKERSEKLLEFLIAHYRIAELVGESAIKAFKNALLKEIK
Sequences:
>Translated_610_residues MKLLDLDGVIEKGVFEIPSYQRGYAWQERQLKDFWNDLEHVSKLGDKFHYMHSLTLRELENDFENSAFEIIDGQQRLATS LILLGLLAKTTQNKDPKYSFINLEPILSYKYYGLSEAFRAITEEEKDLKAFKTSFYAKNLIDAYTFFKEKISDTPVGTLE RMFDALTKKMLFSVVGLNDNRIDPFSSFETINNRGKDLSTLELFKNRLHFVAHKICDEKEELENLQKKINDTYAIIYHDL RQFEDTHLDGFLKHFVEYYYGEKGDFKKRLLEMEFNAHQRYTDNTNFNEEYEKIDDLLFYLSYSSKVWNFLHTLDEKSIT LIVDDNKKLEIEITPKMRNLLEKMRRLNALSENAFLPLLLSLLTIQLVGRSANEQPYTTQELEGLLEYLERFGFLVYGVA GKNTAKHEWIELAFIAFRAFRYGEENIAIEDLPTLEKSFFKGKYSGLELLEESIHSKKNTEKWYQWGKALNYLLYEYELH HNPETTLNFDSSIESIEHILPQNPDQGYSAKEKSWAKNPNIVHALGNLLLIPKNANSSLSNKPFEEKRKQYLKGSYSEKE VAKNASFGVAQIKERSEKLLEFLIAHYRIAELVGESAIKAFKNALLKEIK >Mature_610_residues MKLLDLDGVIEKGVFEIPSYQRGYAWQERQLKDFWNDLEHVSKLGDKFHYMHSLTLRELENDFENSAFEIIDGQQRLATS LILLGLLAKTTQNKDPKYSFINLEPILSYKYYGLSEAFRAITEEEKDLKAFKTSFYAKNLIDAYTFFKEKISDTPVGTLE RMFDALTKKMLFSVVGLNDNRIDPFSSFETINNRGKDLSTLELFKNRLHFVAHKICDEKEELENLQKKINDTYAIIYHDL RQFEDTHLDGFLKHFVEYYYGEKGDFKKRLLEMEFNAHQRYTDNTNFNEEYEKIDDLLFYLSYSSKVWNFLHTLDEKSIT LIVDDNKKLEIEITPKMRNLLEKMRRLNALSENAFLPLLLSLLTIQLVGRSANEQPYTTQELEGLLEYLERFGFLVYGVA GKNTAKHEWIELAFIAFRAFRYGEENIAIEDLPTLEKSFFKGKYSGLELLEESIHSKKNTEKWYQWGKALNYLLYEYELH HNPETTLNFDSSIESIEHILPQNPDQGYSAKEKSWAKNPNIVHALGNLLLIPKNANSSLSNKPFEEKRKQYLKGSYSEKE VAKNASFGVAQIKERSEKLLEFLIAHYRIAELVGESAIKAFKNALLKEIK
Specific function: Unknown
COG id: COG1479
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 71359; Mature: 71359
Theoretical pI: Translated: 6.00; Mature: 6.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLLDLDGVIEKGVFEIPSYQRGYAWQERQLKDFWNDLEHVSKLGDKFHYMHSLTLRELE CCEECCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NDFENSAFEIIDGQQRLATSLILLGLLAKTTQNKDPKYSFINLEPILSYKYYGLSEAFRA HHHCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHCCHHHHHHH ITEEEKDLKAFKTSFYAKNLIDAYTFFKEKISDTPVGTLERMFDALTKKMLFSVVGLNDN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCC RIDPFSSFETINNRGKDLSTLELFKNRLHFVAHKICDEKEELENLQKKINDTYAIIYHDL CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHH RQFEDTHLDGFLKHFVEYYYGEKGDFKKRLLEMEFNAHQRYTDNTNFNEEYEKIDDLLFY HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH LSYSSKVWNFLHTLDEKSITLIVDDNKKLEIEITPKMRNLLEKMRRLNALSENAFLPLLL HHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEECHHHHHHHHHHHHHHHHCCCCHHHHHH SLLTIQLVGRSANEQPYTTQELEGLLEYLERFGFLVYGVAGKNTAKHEWIELAFIAFRAF HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHH RYGEENIAIEDLPTLEKSFFKGKYSGLELLEESIHSKKNTEKWYQWGKALNYLLYEYELH HCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEEC HNPETTLNFDSSIESIEHILPQNPDQGYSAKEKSWAKNPNIVHALGNLLLIPKNANSSLS CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHCCCEEEEECCCCCCCC NKPFEEKRKQYLKGSYSEKEVAKNASFGVAQIKERSEKLLEFLIAHYRIAELVGESAIKA CCCHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FKNALLKEIK HHHHHHHHCC >Mature Secondary Structure MKLLDLDGVIEKGVFEIPSYQRGYAWQERQLKDFWNDLEHVSKLGDKFHYMHSLTLRELE CCEECCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NDFENSAFEIIDGQQRLATSLILLGLLAKTTQNKDPKYSFINLEPILSYKYYGLSEAFRA HHHCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHCCHHHHHHH ITEEEKDLKAFKTSFYAKNLIDAYTFFKEKISDTPVGTLERMFDALTKKMLFSVVGLNDN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCC RIDPFSSFETINNRGKDLSTLELFKNRLHFVAHKICDEKEELENLQKKINDTYAIIYHDL CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHH RQFEDTHLDGFLKHFVEYYYGEKGDFKKRLLEMEFNAHQRYTDNTNFNEEYEKIDDLLFY HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH LSYSSKVWNFLHTLDEKSITLIVDDNKKLEIEITPKMRNLLEKMRRLNALSENAFLPLLL HHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEECHHHHHHHHHHHHHHHHCCCCHHHHHH SLLTIQLVGRSANEQPYTTQELEGLLEYLERFGFLVYGVAGKNTAKHEWIELAFIAFRAF HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHH RYGEENIAIEDLPTLEKSFFKGKYSGLELLEESIHSKKNTEKWYQWGKALNYLLYEYELH HCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEEC HNPETTLNFDSSIESIEHILPQNPDQGYSAKEKSWAKNPNIVHALGNLLLIPKNANSSLS CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHCCCEEEEECCCCCCCC NKPFEEKRKQYLKGSYSEKEVAKNASFGVAQIKERSEKLLEFLIAHYRIAELVGESAIKA CCCHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FKNALLKEIK HHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA