Definition Helicobacter pylori HPAG1 chromosome, complete genome.
Accession NC_008086
Length 1,596,366

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The map label for this gene is 108563761

Identifier: 108563761

GI number: 108563761

Start: 1387792

End: 1389624

Strand: Direct

Name: 108563761

Synonym: HPAG1_1336

Alternate gene names: NA

Gene position: 1387792-1389624 (Clockwise)

Preceding gene: 108563760

Following gene: 108563762

Centisome position: 86.93

GC content: 37.32

Gene sequence:

>1833_bases
ATGAAATTGTTGGATTTAGATGGAGTGATTGAAAAAGGCGTGTTTGAAATCCCCAGCTATCAAAGGGGGTATGCATGGCA
AGAAAGGCAATTAAAGGATTTTTGGAACGATTTAGAGCATGTGTCCAAGCTGGGAGATAAATTCCACTACATGCACAGCT
TAACTTTAAGAGAGCTTGAAAATGATTTTGAAAATAGCGCTTTTGAAATCATAGACGGCCAGCAACGATTGGCTACAAGC
CTGATTTTACTAGGCCTTTTAGCAAAAACCACCCAAAACAAAGACCCAAAGTATTCTTTCATCAACCTTGAACCCATTTT
ATCCTATAAGTATTATGGTTTGAGTGAAGCTTTTAGGGCGATCACTGAAGAAGAAAAAGATTTAAAAGCGTTCAAAACTT
CTTTTTACGCCAAAAATTTGATTGACGCTTATACATTTTTTAAAGAAAAAATCAGCGATACGCCTGTTGGAACGCTTGAA
AGAATGTTTGATGCTCTCACTAAAAAAATGCTTTTTAGCGTGGTGGGATTGAACGATAACCGAATCGATCCTTTCAGCTC
TTTTGAAACGATTAACAATCGTGGCAAGGATCTATCCACTTTGGAATTGTTCAAAAACCGCCTGCATTTTGTGGCGCACA
AGATCTGTGATGAAAAAGAAGAGTTAGAAAATCTTCAAAAAAAGATCAATGACACCTACGCTATTATTTATCACGATTTG
AGGCAGTTTGAAGACACTCATTTAGATGGCTTTTTAAAGCATTTCGTGGAGTATTATTATGGCGAGAAAGGGGATTTTAA
AAAGAGGTTATTGGAGATGGAGTTTAACGCTCATCAAAGATATACCGACAACACCAACTTTAATGAGGAATATGAAAAAA
TAGATGATTTGTTGTTTTATCTTTCTTATTCTTCTAAAGTTTGGAATTTCTTGCACACGCTTGATGAAAAATCTATCACC
CTTATTGTTGATGACAATAAAAAACTTGAGATTGAAATCACGCCTAAAATGCGCAACTTGTTAGAAAAGATGCGACGACT
AAACGCTTTGAGCGAAAACGCTTTTTTACCCTTATTGCTCTCTCTTTTAACCATACAGCTTGTTGGAAGAAGCGCTAATG
AACAGCCTTATACCACCCAAGAATTAGAGGGCTTATTAGAGTATTTAGAGCGTTTCGGGTTTTTAGTCTATGGGGTTGCT
GGCAAGAATACGGCTAAACATGAATGGATTGAATTGGCTTTTATAGCGTTCAGAGCGTTCAGATATGGGGAAGAAAATAT
CGCCATTGAAGATCTTCCAACGCTAGAAAAGAGTTTTTTCAAGGGCAAGTATAGCGGCTTGGAATTGCTTGAAGAGAGTA
TCCATTCCAAAAAGAATACTGAAAAATGGTATCAGTGGGGCAAGGCATTGAATTACTTGCTTTATGAATACGAGTTGCAC
CATAACCCTGAAACGACTCTGAATTTTGATAGCAGTATAGAAAGCATTGAGCATATCTTGCCCCAAAATCCCGATCAAGG
CTATAGCGCTAAAGAAAAAAGTTGGGCTAAAAACCCTAACATCGTGCATGCTTTAGGGAACTTGCTCTTAATCCCTAAAA
ACGCTAACAGCTCTTTAAGCAACAAGCCTTTTGAGGAAAAAAGAAAGCAATACCTCAAAGGCTCTTATAGCGAAAAAGAA
GTGGCTAAAAACGCTTCTTTTGGAGTCGCGCAAATCAAAGAAAGGAGCGAAAAATTATTAGAATTTTTAATCGCGCATTA
TCGTATCGCTGAATTGGTGGGTGAAAGCGCCATTAAAGCTTTTAAAAACGCTCTTTTAAAAGAGATCAAATGA

Upstream 100 bases:

>100_bases
TTCACGCACAGCACTAGGCTTGGGCAACCAAAATTGATTGAGCGAAAAAATTAAGGGTTATGGTTTTTACCCATAAGCCC
ATCATTAAGAAAGGATTTTA

Downstream 100 bases:

>100_bases
TGCGATCACTTAAAAATAAGGGGGCGTTTAAAAAACACCCACCCCACAACAAGGAGGAACAAGCCATGCCAAAAAGATAA
AAACATTAAAAAAACATTGA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 610; Mature: 610

Protein sequence:

>610_residues
MKLLDLDGVIEKGVFEIPSYQRGYAWQERQLKDFWNDLEHVSKLGDKFHYMHSLTLRELENDFENSAFEIIDGQQRLATS
LILLGLLAKTTQNKDPKYSFINLEPILSYKYYGLSEAFRAITEEEKDLKAFKTSFYAKNLIDAYTFFKEKISDTPVGTLE
RMFDALTKKMLFSVVGLNDNRIDPFSSFETINNRGKDLSTLELFKNRLHFVAHKICDEKEELENLQKKINDTYAIIYHDL
RQFEDTHLDGFLKHFVEYYYGEKGDFKKRLLEMEFNAHQRYTDNTNFNEEYEKIDDLLFYLSYSSKVWNFLHTLDEKSIT
LIVDDNKKLEIEITPKMRNLLEKMRRLNALSENAFLPLLLSLLTIQLVGRSANEQPYTTQELEGLLEYLERFGFLVYGVA
GKNTAKHEWIELAFIAFRAFRYGEENIAIEDLPTLEKSFFKGKYSGLELLEESIHSKKNTEKWYQWGKALNYLLYEYELH
HNPETTLNFDSSIESIEHILPQNPDQGYSAKEKSWAKNPNIVHALGNLLLIPKNANSSLSNKPFEEKRKQYLKGSYSEKE
VAKNASFGVAQIKERSEKLLEFLIAHYRIAELVGESAIKAFKNALLKEIK

Sequences:

>Translated_610_residues
MKLLDLDGVIEKGVFEIPSYQRGYAWQERQLKDFWNDLEHVSKLGDKFHYMHSLTLRELENDFENSAFEIIDGQQRLATS
LILLGLLAKTTQNKDPKYSFINLEPILSYKYYGLSEAFRAITEEEKDLKAFKTSFYAKNLIDAYTFFKEKISDTPVGTLE
RMFDALTKKMLFSVVGLNDNRIDPFSSFETINNRGKDLSTLELFKNRLHFVAHKICDEKEELENLQKKINDTYAIIYHDL
RQFEDTHLDGFLKHFVEYYYGEKGDFKKRLLEMEFNAHQRYTDNTNFNEEYEKIDDLLFYLSYSSKVWNFLHTLDEKSIT
LIVDDNKKLEIEITPKMRNLLEKMRRLNALSENAFLPLLLSLLTIQLVGRSANEQPYTTQELEGLLEYLERFGFLVYGVA
GKNTAKHEWIELAFIAFRAFRYGEENIAIEDLPTLEKSFFKGKYSGLELLEESIHSKKNTEKWYQWGKALNYLLYEYELH
HNPETTLNFDSSIESIEHILPQNPDQGYSAKEKSWAKNPNIVHALGNLLLIPKNANSSLSNKPFEEKRKQYLKGSYSEKE
VAKNASFGVAQIKERSEKLLEFLIAHYRIAELVGESAIKAFKNALLKEIK
>Mature_610_residues
MKLLDLDGVIEKGVFEIPSYQRGYAWQERQLKDFWNDLEHVSKLGDKFHYMHSLTLRELENDFENSAFEIIDGQQRLATS
LILLGLLAKTTQNKDPKYSFINLEPILSYKYYGLSEAFRAITEEEKDLKAFKTSFYAKNLIDAYTFFKEKISDTPVGTLE
RMFDALTKKMLFSVVGLNDNRIDPFSSFETINNRGKDLSTLELFKNRLHFVAHKICDEKEELENLQKKINDTYAIIYHDL
RQFEDTHLDGFLKHFVEYYYGEKGDFKKRLLEMEFNAHQRYTDNTNFNEEYEKIDDLLFYLSYSSKVWNFLHTLDEKSIT
LIVDDNKKLEIEITPKMRNLLEKMRRLNALSENAFLPLLLSLLTIQLVGRSANEQPYTTQELEGLLEYLERFGFLVYGVA
GKNTAKHEWIELAFIAFRAFRYGEENIAIEDLPTLEKSFFKGKYSGLELLEESIHSKKNTEKWYQWGKALNYLLYEYELH
HNPETTLNFDSSIESIEHILPQNPDQGYSAKEKSWAKNPNIVHALGNLLLIPKNANSSLSNKPFEEKRKQYLKGSYSEKE
VAKNASFGVAQIKERSEKLLEFLIAHYRIAELVGESAIKAFKNALLKEIK

Specific function: Unknown

COG id: COG1479

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 71359; Mature: 71359

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLLDLDGVIEKGVFEIPSYQRGYAWQERQLKDFWNDLEHVSKLGDKFHYMHSLTLRELE
CCEECCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NDFENSAFEIIDGQQRLATSLILLGLLAKTTQNKDPKYSFINLEPILSYKYYGLSEAFRA
HHHCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHCCHHHHHHH
ITEEEKDLKAFKTSFYAKNLIDAYTFFKEKISDTPVGTLERMFDALTKKMLFSVVGLNDN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
RIDPFSSFETINNRGKDLSTLELFKNRLHFVAHKICDEKEELENLQKKINDTYAIIYHDL
CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHH
RQFEDTHLDGFLKHFVEYYYGEKGDFKKRLLEMEFNAHQRYTDNTNFNEEYEKIDDLLFY
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
LSYSSKVWNFLHTLDEKSITLIVDDNKKLEIEITPKMRNLLEKMRRLNALSENAFLPLLL
HHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEECHHHHHHHHHHHHHHHHCCCCHHHHHH
SLLTIQLVGRSANEQPYTTQELEGLLEYLERFGFLVYGVAGKNTAKHEWIELAFIAFRAF
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHH
RYGEENIAIEDLPTLEKSFFKGKYSGLELLEESIHSKKNTEKWYQWGKALNYLLYEYELH
HCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEEC
HNPETTLNFDSSIESIEHILPQNPDQGYSAKEKSWAKNPNIVHALGNLLLIPKNANSSLS
CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHCCCEEEEECCCCCCCC
NKPFEEKRKQYLKGSYSEKEVAKNASFGVAQIKERSEKLLEFLIAHYRIAELVGESAIKA
CCCHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FKNALLKEIK
HHHHHHHHCC
>Mature Secondary Structure
MKLLDLDGVIEKGVFEIPSYQRGYAWQERQLKDFWNDLEHVSKLGDKFHYMHSLTLRELE
CCEECCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NDFENSAFEIIDGQQRLATSLILLGLLAKTTQNKDPKYSFINLEPILSYKYYGLSEAFRA
HHHCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHCCHHHHHHH
ITEEEKDLKAFKTSFYAKNLIDAYTFFKEKISDTPVGTLERMFDALTKKMLFSVVGLNDN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
RIDPFSSFETINNRGKDLSTLELFKNRLHFVAHKICDEKEELENLQKKINDTYAIIYHDL
CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHH
RQFEDTHLDGFLKHFVEYYYGEKGDFKKRLLEMEFNAHQRYTDNTNFNEEYEKIDDLLFY
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
LSYSSKVWNFLHTLDEKSITLIVDDNKKLEIEITPKMRNLLEKMRRLNALSENAFLPLLL
HHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEECHHHHHHHHHHHHHHHHCCCCHHHHHH
SLLTIQLVGRSANEQPYTTQELEGLLEYLERFGFLVYGVAGKNTAKHEWIELAFIAFRAF
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHH
RYGEENIAIEDLPTLEKSFFKGKYSGLELLEESIHSKKNTEKWYQWGKALNYLLYEYELH
HCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEEC
HNPETTLNFDSSIESIEHILPQNPDQGYSAKEKSWAKNPNIVHALGNLLLIPKNANSSLS
CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHCCCEEEEECCCCCCCC
NKPFEEKRKQYLKGSYSEKEVAKNASFGVAQIKERSEKLLEFLIAHYRIAELVGESAIKA
CCCHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FKNALLKEIK
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA