| Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
|---|---|
| Accession | NC_008086 |
| Length | 1,596,366 |
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The map label for this gene is 108563398
Identifier: 108563398
GI number: 108563398
Start: 1023331
End: 1024500
Strand: Reverse
Name: 108563398
Synonym: HPAG1_0973
Alternate gene names: NA
Gene position: 1024500-1023331 (Counterclockwise)
Preceding gene: 108563399
Following gene: 108563397
Centisome position: 64.18
GC content: 38.03
Gene sequence:
>1170_bases ATGGTTATTGTTTTAGTCGTGGATAGCTTTAAAGACACCAGTAATGGCACTTCTATGACAGCGTTTCGTTTTTTTGAAGC GCTGAAAAAAAGAGGGCATGCGATGAGAGTGGTCGCCCCTCATGTAGATAATTTAGGGAGTGAAGAAGAAGGGTATTACA ACCTTAAAGAGCGCTACATCCCCCTAGTTACAGAAATCTCACACAAACAACACATCCTTTTTGCTAAACCGGATGAAAAA ATCTTAAGAAAGGCTTTTAAGGGAGCGGATATGATCCATACTTATTTGCCTTTTTTGCTAGAAAAAACAGCTGTAAAAAT CGCGCGAGAAATGCAAGTGCCTTATATTGGCTCTTTCCATTTACAGCCAGAGCATATTTCTTATAACATGAAATTGGGGT GGTTTTCTTGGTTCAACATGATGCTTTTTTCGTGGTTTAAATCTTCGCATTACCGCTATATCCACCATATCCATTGCCCC TCAAAATTCATTGTAGAAGAATTAGAAAAATACAACTATGGAGGGAAAAAATACGCTATTTCTAACGGCTTTGATCCCAT GTTTAGATTTGAACACCCGCAAAAAAGCCTTTTTGACACCACGCCCTTTAAAATCGCTATGGTAGGGCGCTATTCTAATG AAAAAAATCAAAGCGTTTTAATCAAAGCGGTTGCTTTAAGCCGATACAAACAAGACATTGTATTATTACTCAAAGGCAAA GGGCCTGATGAGAAAAAAATCAAACTTTTAGCCCAAAAACTAGGCGTAAAAACGGAGTTTGGGTTTGTCAATTCCAATGA ATTGTTAGAGATTTTAAAAACTTGCACCCTTTATGCACACACGGCCAATGTGGAAAGCGAAGCGATTGCGTGTTTAGAGG CTATTAGCGTGGGGATTGTGCCTGTTATCGCCAATAGCCCTTTAAGCGCGACCAGGCAATTCGCGCTAGATGAACGATCG CTATTTGAACCTAATAACGCTAAAGATTTGAGCGCTAAAATAGACTGGTGGTTAGAAAACAAGCTTGAAAGAGAAAGAAT GCAAAATAAATACGCTAAAAGCGCTTTAAATTACACTTTAGAAAATTCAGTCATTCAAATTGAAAAAGTTTATGAAGAAG CGATCAGAGATTTTAAAAATAACCCCCATCTTTTTAAAACCTTATCGTAG
Upstream 100 bases:
>100_bases GAGGCGTTTGTGTTAGACATTCAGGTTTTAGAGGGAATGATAGAAATCGTGGTGTTTGATAAAAAGCCTTTTAAATTCAA TTTTAAAGAAGAGTAGTTAA
Downstream 100 bases:
>100_bases CAAAAGGATAAAAAATGCAAGAAGTCCATGATTATGGGATTAAATTTTGGAGCAATAACGAATTTAAGATAGAAAAAGGC TTGGTTAAAGTTTGCCATGG
Product: type 1 capsular polysaccharide biosynthesis protein J
Products: NA
Alternate protein names: Glycosyl Transferase; Group 1 Glycosyl Transferase; Type 1 Capsular Polysaccharide Biosynthesis Protein J; Type 1 Capsular Polysaccharide Biosynthesis Protein; Cholesterol Alpha-Glucosyltransferase; 1 2-Diacylglycerol 3-Glucosyltransferase; Glucosyltransferase; Lipopolysaccharide Biosynthesis Protein; Glycosyl Transferase Family Protein
Number of amino acids: Translated: 389; Mature: 389
Protein sequence:
>389_residues MVIVLVVDSFKDTSNGTSMTAFRFFEALKKRGHAMRVVAPHVDNLGSEEEGYYNLKERYIPLVTEISHKQHILFAKPDEK ILRKAFKGADMIHTYLPFLLEKTAVKIAREMQVPYIGSFHLQPEHISYNMKLGWFSWFNMMLFSWFKSSHYRYIHHIHCP SKFIVEELEKYNYGGKKYAISNGFDPMFRFEHPQKSLFDTTPFKIAMVGRYSNEKNQSVLIKAVALSRYKQDIVLLLKGK GPDEKKIKLLAQKLGVKTEFGFVNSNELLEILKTCTLYAHTANVESEAIACLEAISVGIVPVIANSPLSATRQFALDERS LFEPNNAKDLSAKIDWWLENKLERERMQNKYAKSALNYTLENSVIQIEKVYEEAIRDFKNNPHLFKTLS
Sequences:
>Translated_389_residues MVIVLVVDSFKDTSNGTSMTAFRFFEALKKRGHAMRVVAPHVDNLGSEEEGYYNLKERYIPLVTEISHKQHILFAKPDEK ILRKAFKGADMIHTYLPFLLEKTAVKIAREMQVPYIGSFHLQPEHISYNMKLGWFSWFNMMLFSWFKSSHYRYIHHIHCP SKFIVEELEKYNYGGKKYAISNGFDPMFRFEHPQKSLFDTTPFKIAMVGRYSNEKNQSVLIKAVALSRYKQDIVLLLKGK GPDEKKIKLLAQKLGVKTEFGFVNSNELLEILKTCTLYAHTANVESEAIACLEAISVGIVPVIANSPLSATRQFALDERS LFEPNNAKDLSAKIDWWLENKLERERMQNKYAKSALNYTLENSVIQIEKVYEEAIRDFKNNPHLFKTLS >Mature_389_residues MVIVLVVDSFKDTSNGTSMTAFRFFEALKKRGHAMRVVAPHVDNLGSEEEGYYNLKERYIPLVTEISHKQHILFAKPDEK ILRKAFKGADMIHTYLPFLLEKTAVKIAREMQVPYIGSFHLQPEHISYNMKLGWFSWFNMMLFSWFKSSHYRYIHHIHCP SKFIVEELEKYNYGGKKYAISNGFDPMFRFEHPQKSLFDTTPFKIAMVGRYSNEKNQSVLIKAVALSRYKQDIVLLLKGK GPDEKKIKLLAQKLGVKTEFGFVNSNELLEILKTCTLYAHTANVESEAIACLEAISVGIVPVIANSPLSATRQFALDERS LFEPNNAKDLSAKIDWWLENKLERERMQNKYAKSALNYTLENSVIQIEKVYEEAIRDFKNNPHLFKTLS
Specific function: Unknown
COG id: COG0438
COG function: function code M; Glycosyltransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44997; Mature: 44997
Theoretical pI: Translated: 9.51; Mature: 9.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVIVLVVDSFKDTSNGTSMTAFRFFEALKKRGHAMRVVAPHVDNLGSEEEGYYNLKERYI CEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHHHCC PLVTEISHKQHILFAKPDEKILRKAFKGADMIHTYLPFLLEKTAVKIAREMQVPYIGSFH HHHHCCCCCCEEEEECCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE LQPEHISYNMKLGWFSWFNMMLFSWFKSSHYRYIHHIHCPSKFIVEELEKYNYGGKKYAI ECCCCEEEEEEEHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCCCEEEE SNGFDPMFRFEHPQKSLFDTTPFKIAMVGRYSNEKNQSVLIKAVALSRYKQDIVLLLKGK CCCCCCCEECCCCHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECC GPDEKKIKLLAQKLGVKTEFGFVNSNELLEILKTCTLYAHTANVESEAIACLEAISVGIV CCCHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHCEE PVIANSPLSATRQFALDERSLFEPNNAKDLSAKIDWWLENKLERERMQNKYAKSALNYTL EEECCCCHHHHHHHHCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ENSVIQIEKVYEEAIRDFKNNPHLFKTLS CCCHHHHHHHHHHHHHHCCCCCCEEEECC >Mature Secondary Structure MVIVLVVDSFKDTSNGTSMTAFRFFEALKKRGHAMRVVAPHVDNLGSEEEGYYNLKERYI CEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHHHCC PLVTEISHKQHILFAKPDEKILRKAFKGADMIHTYLPFLLEKTAVKIAREMQVPYIGSFH HHHHCCCCCCEEEEECCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE LQPEHISYNMKLGWFSWFNMMLFSWFKSSHYRYIHHIHCPSKFIVEELEKYNYGGKKYAI ECCCCEEEEEEEHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCCCEEEE SNGFDPMFRFEHPQKSLFDTTPFKIAMVGRYSNEKNQSVLIKAVALSRYKQDIVLLLKGK CCCCCCCEECCCCHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECC GPDEKKIKLLAQKLGVKTEFGFVNSNELLEILKTCTLYAHTANVESEAIACLEAISVGIV CCCHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHCEE PVIANSPLSATRQFALDERSLFEPNNAKDLSAKIDWWLENKLERERMQNKYAKSALNYTL EEECCCCHHHHHHHHCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ENSVIQIEKVYEEAIRDFKNNPHLFKTLS CCCHHHHHHHHHHHHHHCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA