Definition Helicobacter pylori HPAG1 chromosome, complete genome.
Accession NC_008086
Length 1,596,366

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The map label for this gene is 108563282

Identifier: 108563282

GI number: 108563282

Start: 889912

End: 890787

Strand: Reverse

Name: 108563282

Synonym: HPAG1_0857

Alternate gene names: NA

Gene position: 890787-889912 (Counterclockwise)

Preceding gene: 108563283

Following gene: 108563281

Centisome position: 55.8

GC content: 40.18

Gene sequence:

>876_bases
ATGAAACGAAGGGATTTTATTAAAACGACTGCTTTAGGCGCTACAGGTGCTGTTTTGGGAGCACAGATTTTGCAGGCAGA
AGAAAGTAAAGGGAGTGTTGCAAAATATAAAATAGAAGCTCAATACAGCATTGATTTTGATTCTGCAGAACACACTTCAC
TTTTCATTCCCATGCCGAGTGTTGTAGCGAGCAATGTGCATTTACAAGGCAATCATGCCAGCTATAAAAGCATGCTCAAT
TTTGGAGTGCCTTATTTGCAAGTGGATTTTTTAAAAAGCACTCAAAAAAAGCAAGTCCATTTGTCTTATGAGATCGCTAG
CTATCAATTGAATGAGCGTTTGTTTGAAACGAGCGATTTTGTAGCAATGGGGCGTTATGAAAGAGACGATGCGAGCGTGG
CTAACATTGCCAACCAGCTCAAGGGAACAACCCCTAAAGAAAGCGTTCGCAATTTTTATGCGTTCATCAAGCATGAGATG
CCTAAAAGACAGAAGGCTTTAGAGGGTAAAGAAAATTTACCTAAACGAGATAGTTTGCCTTGGTTTGCAACCATTTCACA
AGAGAGCATGTTTGTGTCCTTATGCCATGCGTGTGGGATTAAAAGTGCTGAAGTGCAAGGCTTGAAATTGGGTCAAAACA
GCGTGGTGAAAAACGCTCCTAGAGTGGAAGTGTATTTGAAAGATTCATTTCTAGCGTTTGATTTTCAAAATAATCACAAG
GAAGTTTTTATCCCGTTGAATCGTCATAAAGACATGCAGTTAGATTCTGCCTTATTGGCGACTTTTGGCGATGCCTTTGC
CCTTGTGGATGGTAGGGATTTAGGCAATTACGAGAGCAAACTTTTTGAAAAAAGAGTGTCCTATACGATTGTCTAA

Upstream 100 bases:

>100_bases
TCAAAATTTAGGTTTTTGGATACTTATCAATCCTTTGGTGGTGTGTCCTACTTTTTCATTCATTCAACGAATTTAAAAAT
TACAATAAAGAGTTATAGTT

Downstream 100 bases:

>100_bases
AGGCATGAAATTTAGGAATATTCCTTGATAGCGGGCTTTCCTTTTAAGGAGGGTTTGCGAAAGATTTTAAGGATTGTCTT
TATGCGAGAATTTTTTAAGA

Product: hypothetical protein

Products: NA

Alternate protein names: KatA Associated Protein

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MKRRDFIKTTALGATGAVLGAQILQAEESKGSVAKYKIEAQYSIDFDSAEHTSLFIPMPSVVASNVHLQGNHASYKSMLN
FGVPYLQVDFLKSTQKKQVHLSYEIASYQLNERLFETSDFVAMGRYERDDASVANIANQLKGTTPKESVRNFYAFIKHEM
PKRQKALEGKENLPKRDSLPWFATISQESMFVSLCHACGIKSAEVQGLKLGQNSVVKNAPRVEVYLKDSFLAFDFQNNHK
EVFIPLNRHKDMQLDSALLATFGDAFALVDGRDLGNYESKLFEKRVSYTIV

Sequences:

>Translated_291_residues
MKRRDFIKTTALGATGAVLGAQILQAEESKGSVAKYKIEAQYSIDFDSAEHTSLFIPMPSVVASNVHLQGNHASYKSMLN
FGVPYLQVDFLKSTQKKQVHLSYEIASYQLNERLFETSDFVAMGRYERDDASVANIANQLKGTTPKESVRNFYAFIKHEM
PKRQKALEGKENLPKRDSLPWFATISQESMFVSLCHACGIKSAEVQGLKLGQNSVVKNAPRVEVYLKDSFLAFDFQNNHK
EVFIPLNRHKDMQLDSALLATFGDAFALVDGRDLGNYESKLFEKRVSYTIV
>Mature_291_residues
MKRRDFIKTTALGATGAVLGAQILQAEESKGSVAKYKIEAQYSIDFDSAEHTSLFIPMPSVVASNVHLQGNHASYKSMLN
FGVPYLQVDFLKSTQKKQVHLSYEIASYQLNERLFETSDFVAMGRYERDDASVANIANQLKGTTPKESVRNFYAFIKHEM
PKRQKALEGKENLPKRDSLPWFATISQESMFVSLCHACGIKSAEVQGLKLGQNSVVKNAPRVEVYLKDSFLAFDFQNNHK
EVFIPLNRHKDMQLDSALLATFGDAFALVDGRDLGNYESKLFEKRVSYTIV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32753; Mature: 32753

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRRDFIKTTALGATGAVLGAQILQAEESKGSVAKYKIEAQYSIDFDSAEHTSLFIPMPS
CCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEEEECCCCCCCCEEEEECHH
VVASNVHLQGNHASYKSMLNFGVPYLQVDFLKSTQKKQVHLSYEIASYQLNERLFETSDF
HHHCCEEEECCCHHHHHHHHCCCCEEEEEEHHCCCCCEEEEEEEEEHHHHHHHHHHCCCE
VAMGRYERDDASVANIANQLKGTTPKESVRNFYAFIKHEMPKRQKALEGKENLPKRDSLP
EEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHCCHHCCCCCCCCC
WFATISQESMFVSLCHACGIKSAEVQGLKLGQNSVVKNAPRVEVYLKDSFLAFDFQNNHK
EEEEECCHHHHHHHHHHHCCCCCCCCEEEECCCHHHCCCCEEEEEEECCEEEEEEECCCC
EVFIPLNRHKDMQLDSALLATFGDAFALVDGRDLGNYESKLFEKRVSYTIV
EEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHCEECC
>Mature Secondary Structure
MKRRDFIKTTALGATGAVLGAQILQAEESKGSVAKYKIEAQYSIDFDSAEHTSLFIPMPS
CCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEEEECCCCCCCCEEEEECHH
VVASNVHLQGNHASYKSMLNFGVPYLQVDFLKSTQKKQVHLSYEIASYQLNERLFETSDF
HHHCCEEEECCCHHHHHHHHCCCCEEEEEEHHCCCCCEEEEEEEEEHHHHHHHHHHCCCE
VAMGRYERDDASVANIANQLKGTTPKESVRNFYAFIKHEMPKRQKALEGKENLPKRDSLP
EEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHCCHHCCCCCCCCC
WFATISQESMFVSLCHACGIKSAEVQGLKLGQNSVVKNAPRVEVYLKDSFLAFDFQNNHK
EEEEECCHHHHHHHHHHHCCCCCCCCEEEECCCHHHCCCCEEEEEEECCEEEEEEECCCC
EVFIPLNRHKDMQLDSALLATFGDAFALVDGRDLGNYESKLFEKRVSYTIV
EEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA