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The map label for this gene is ykpA [H]

Identifier: 108563262

GI number: 108563262

Start: 872693

End: 874294

Strand: Reverse

Name: ykpA [H]

Synonym: HPAG1_0837

Alternate gene names: 108563262

Gene position: 874294-872693 (Counterclockwise)

Preceding gene: 108563264

Following gene: 108563261

Centisome position: 54.77

GC content: 41.64

Gene sequence:

>1602_bases
ATGCTGCAAACCATCAACTTAACGCAACGCTATGCGACTAAAAAATTGTTTGAAAACGTGAATATCAAGCTGGATAAAAA
CAAGCGCTACGGGCTTATTGGGGCTAATGGCGCAGGAAAGTCCACTTTTTTAAAGATTTTAAGCAAGAGCATTGATTGTA
GCAGTGGGGAAGTCATTATTACAAGCGGGATGAGGATGGGGGTTTTAGGGCAGGATCAATACGCTTTTGAAGATTTGAGC
CTTAAAGATGCGGTTTTGATAGGAAATAAGCGTTTGTATGACGCTATCAAAGAAAAAGAACGCTTATACACCGAAGGCGA
TTTGAGCGATGATAAAGTGAATGCGAGACTAGGGGAGTTAGAAACCATTTGCGTAGAAGAAGATCCCATGTATGAATGCG
AAGTGGTGATTGAAAAAATCCTAGAAGATTTAGGCATTCCTAGCTCTAGGCACAATGATTTGATGAAAACCCTGCCAAGC
AGCGATAAATTTAAAATCCTTCTCGCTCAAGTCTTGTTCCCTAAACCGGATATTTTGCTGTTAGATGAGCCGACTAACAA
TCTGGATTTAAACGCCATTGAATGGTTAGAAAACAACCTCAAACGCCATGAAGGCACGATGGTAGTCATCAGCCATGACA
GGCATTTTTTAAATGCGGTATGCACGCATATTTTGGATTTGGATTTTCACAGCGTGCGCGAATTTAGCGGGAATTATGAC
GATTGGTATATCGCTTCCACTCTGATCGCTAAACAGCAAGAGGCCGAACGCAATAAAAAACTCAAAGAAAAAGAAGAGCT
GGAAAAATTTATCGCTCGTTTTAGCGCTAACGCTTCTAAAGCTAAGCAAGCCACCAGCCGCCAAAAACAACTGGATAAAT
TAGACATTCAAAGTTTAGCAATATCCAGTAGGAGGGATCCTAGCATTATTTTCAAACCCAAACGCACCATTGGTAATGAA
GCTTTAGAGTGCGAAAACATCTCTAAAAGTTATGATGGGCAAATTGTTTTAAATCAAGTGAGCTTGAAAGTGATGCCTAA
AGACAAGATCGCTCTCATAGGGCCAAACGGCGTGGGTAAATCCACGCTTTGTAAAATTTTAGTAGAAGAGTTAAAGCCGG
ATACGGGCGTGGTGAAATGGGGAGCGACGGTTTTAAAAGGCTATTTCCCTCAAAACGTGAGCGAAGAAATTAGCGGCGAA
GAGACCTTGTATCAATGGCTCTTTAATTTCAACAAAAAGATTGAAAGCGCAGAGGTTAGGAACGCTTTAGGGAGGATGCT
TTTTAATGGCGAAGAGCAAGAAAAATGCGTGAACGCTTTAAGCGGGGGCGAAAAACACCGAATGGTTTTATCCAAGCTCA
TGCTAGAGGGGGGGAATTTCTTAGTCTTAGATGAGCCAACCAACCACCTGGATTTAGAAGCCATTATCGCTTTAGGCGAA
GCGCTCTTTAAATTTGATGGGGCGCTGATTTGCGTAAGCCATGACAGAGAGCTCATTGATGCGTATGCTAATAGGATTAT
TGAATTAGTCCCAGGCCCTAAAGGCGCTTCAATCATTGATTTTAAAGGCAGTTATGAAGAGTATTTAGCGAGCAAAAAAT
GA

Upstream 100 bases:

>100_bases
AAAGACCTTATGAATAACCATAATAATCAAGGGTTACAATATTGCAAATAAAACGCTACAATAAACTTTCTCTAATCACA
AAAAATAAGGAAATCATAAG

Downstream 100 bases:

>100_bases
AACCACGAGATATTGGAATCATTCAAAGCGTTTTAGAGATTACAGGACCTATTAAGGTTACTGAGATTTATGATAAAGCT
AAAGAGCTTTTTGAAAAAGG

Product: ABC transporter, ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 533; Mature: 533

Protein sequence:

>533_residues
MLQTINLTQRYATKKLFENVNIKLDKNKRYGLIGANGAGKSTFLKILSKSIDCSSGEVIITSGMRMGVLGQDQYAFEDLS
LKDAVLIGNKRLYDAIKEKERLYTEGDLSDDKVNARLGELETICVEEDPMYECEVVIEKILEDLGIPSSRHNDLMKTLPS
SDKFKILLAQVLFPKPDILLLDEPTNNLDLNAIEWLENNLKRHEGTMVVISHDRHFLNAVCTHILDLDFHSVREFSGNYD
DWYIASTLIAKQQEAERNKKLKEKEELEKFIARFSANASKAKQATSRQKQLDKLDIQSLAISSRRDPSIIFKPKRTIGNE
ALECENISKSYDGQIVLNQVSLKVMPKDKIALIGPNGVGKSTLCKILVEELKPDTGVVKWGATVLKGYFPQNVSEEISGE
ETLYQWLFNFNKKIESAEVRNALGRMLFNGEEQEKCVNALSGGEKHRMVLSKLMLEGGNFLVLDEPTNHLDLEAIIALGE
ALFKFDGALICVSHDRELIDAYANRIIELVPGPKGASIIDFKGSYEEYLASKK

Sequences:

>Translated_533_residues
MLQTINLTQRYATKKLFENVNIKLDKNKRYGLIGANGAGKSTFLKILSKSIDCSSGEVIITSGMRMGVLGQDQYAFEDLS
LKDAVLIGNKRLYDAIKEKERLYTEGDLSDDKVNARLGELETICVEEDPMYECEVVIEKILEDLGIPSSRHNDLMKTLPS
SDKFKILLAQVLFPKPDILLLDEPTNNLDLNAIEWLENNLKRHEGTMVVISHDRHFLNAVCTHILDLDFHSVREFSGNYD
DWYIASTLIAKQQEAERNKKLKEKEELEKFIARFSANASKAKQATSRQKQLDKLDIQSLAISSRRDPSIIFKPKRTIGNE
ALECENISKSYDGQIVLNQVSLKVMPKDKIALIGPNGVGKSTLCKILVEELKPDTGVVKWGATVLKGYFPQNVSEEISGE
ETLYQWLFNFNKKIESAEVRNALGRMLFNGEEQEKCVNALSGGEKHRMVLSKLMLEGGNFLVLDEPTNHLDLEAIIALGE
ALFKFDGALICVSHDRELIDAYANRIIELVPGPKGASIIDFKGSYEEYLASKK
>Mature_533_residues
MLQTINLTQRYATKKLFENVNIKLDKNKRYGLIGANGAGKSTFLKILSKSIDCSSGEVIITSGMRMGVLGQDQYAFEDLS
LKDAVLIGNKRLYDAIKEKERLYTEGDLSDDKVNARLGELETICVEEDPMYECEVVIEKILEDLGIPSSRHNDLMKTLPS
SDKFKILLAQVLFPKPDILLLDEPTNNLDLNAIEWLENNLKRHEGTMVVISHDRHFLNAVCTHILDLDFHSVREFSGNYD
DWYIASTLIAKQQEAERNKKLKEKEELEKFIARFSANASKAKQATSRQKQLDKLDIQSLAISSRRDPSIIFKPKRTIGNE
ALECENISKSYDGQIVLNQVSLKVMPKDKIALIGPNGVGKSTLCKILVEELKPDTGVVKWGATVLKGYFPQNVSEEISGE
ETLYQWLFNFNKKIESAEVRNALGRMLFNGEEQEKCVNALSGGEKHRMVLSKLMLEGGNFLVLDEPTNHLDLEAIIALGE
ALFKFDGALICVSHDRELIDAYANRIIELVPGPKGASIIDFKGSYEEYLASKK

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI10947137, Length=541, Percent_Identity=31.6081330868762, Blast_Score=236, Evalue=3e-62,
Organism=Homo sapiens, GI27881506, Length=541, Percent_Identity=31.6081330868762, Blast_Score=236, Evalue=4e-62,
Organism=Homo sapiens, GI148612853, Length=535, Percent_Identity=29.5327102803738, Blast_Score=227, Evalue=3e-59,
Organism=Homo sapiens, GI69354671, Length=506, Percent_Identity=31.2252964426877, Blast_Score=192, Evalue=5e-49,
Organism=Homo sapiens, GI10947135, Length=506, Percent_Identity=31.2252964426877, Blast_Score=192, Evalue=8e-49,
Organism=Escherichia coli, GI1787041, Length=533, Percent_Identity=43.1519699812383, Blast_Score=457, Evalue=1e-130,
Organism=Escherichia coli, GI1789751, Length=530, Percent_Identity=32.2641509433962, Blast_Score=271, Evalue=8e-74,
Organism=Escherichia coli, GI2367384, Length=538, Percent_Identity=32.5278810408922, Blast_Score=248, Evalue=1e-66,
Organism=Escherichia coli, GI1787182, Length=548, Percent_Identity=29.7445255474453, Blast_Score=216, Evalue=3e-57,
Organism=Escherichia coli, GI1788165, Length=193, Percent_Identity=32.6424870466321, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1788897, Length=505, Percent_Identity=21.1881188118812, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1790739, Length=215, Percent_Identity=28.8372093023256, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1788225, Length=218, Percent_Identity=25.6880733944954, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI87081791, Length=210, Percent_Identity=28.0952380952381, Blast_Score=67, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17553372, Length=526, Percent_Identity=31.7490494296578, Blast_Score=243, Evalue=2e-64,
Organism=Caenorhabditis elegans, GI17555318, Length=515, Percent_Identity=30.0970873786408, Blast_Score=225, Evalue=6e-59,
Organism=Caenorhabditis elegans, GI17559834, Length=509, Percent_Identity=30.4518664047151, Blast_Score=219, Evalue=3e-57,
Organism=Saccharomyces cerevisiae, GI6320874, Length=505, Percent_Identity=33.8613861386139, Blast_Score=234, Evalue=3e-62,
Organism=Saccharomyces cerevisiae, GI6321121, Length=516, Percent_Identity=30.6201550387597, Blast_Score=217, Evalue=5e-57,
Organism=Saccharomyces cerevisiae, GI6325030, Length=408, Percent_Identity=26.9607843137255, Blast_Score=119, Evalue=1e-27,
Organism=Saccharomyces cerevisiae, GI6324314, Length=420, Percent_Identity=25.4761904761905, Blast_Score=104, Evalue=3e-23,
Organism=Saccharomyces cerevisiae, GI6323278, Length=416, Percent_Identity=23.7980769230769, Blast_Score=98, Evalue=4e-21,
Organism=Saccharomyces cerevisiae, GI6320266, Length=427, Percent_Identity=23.4192037470726, Blast_Score=64, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24642252, Length=540, Percent_Identity=29.4444444444444, Blast_Score=228, Evalue=9e-60,
Organism=Drosophila melanogaster, GI18859989, Length=540, Percent_Identity=29.4444444444444, Blast_Score=228, Evalue=9e-60,
Organism=Drosophila melanogaster, GI24666836, Length=521, Percent_Identity=31.8618042226488, Blast_Score=226, Evalue=3e-59,
Organism=Drosophila melanogaster, GI24641342, Length=518, Percent_Identity=29.9227799227799, Blast_Score=213, Evalue=3e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 59942; Mature: 59942

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQTINLTQRYATKKLFENVNIKLDKNKRYGLIGANGAGKSTFLKILSKSIDCSSGEVII
CCCCCCHHHHHHHHHHHHCCCEEEECCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEE
TSGMRMGVLGQDQYAFEDLSLKDAVLIGNKRLYDAIKEKERLYTEGDLSDDKVNARLGEL
ECCCEECCCCCCCHHHCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCE
ETICVEEDPMYECEVVIEKILEDLGIPSSRHNDLMKTLPSSDKFKILLAQVLFPKPDILL
EEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCCCEEE
LDEPTNNLDLNAIEWLENNLKRHEGTMVVISHDRHFLNAVCTHILDLDFHSVREFSGNYD
EECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCHHHHHHHCCCCC
DWYIASTLIAKQQEAERNKKLKEKEELEKFIARFSANASKAKQATSRQKQLDKLDIQSLA
CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
ISSRRDPSIIFKPKRTIGNEALECENISKSYDGQIVLNQVSLKVMPKDKIALIGPNGVGK
HCCCCCCCEEECCCHHCCCCHHHHHCCCCCCCCEEEEEEEEEEEECCCCEEEECCCCCCH
STLCKILVEELKPDTGVVKWGATVLKGYFPQNVSEEISGEETLYQWLFNFNKKIESAEVR
HHHHHHHHHHCCCCCCEEHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHH
NALGRMLFNGEEQEKCVNALSGGEKHRMVLSKLMLEGGNFLVLDEPTNHLDLEAIIALGE
HHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHH
ALFKFDGALICVSHDRELIDAYANRIIELVPGPKGASIIDFKGSYEEYLASKK
HHHHCCCEEEEEECCHHHHHHHHHHEEEECCCCCCCEEEECCCCHHHHHCCCC
>Mature Secondary Structure
MLQTINLTQRYATKKLFENVNIKLDKNKRYGLIGANGAGKSTFLKILSKSIDCSSGEVII
CCCCCCHHHHHHHHHHHHCCCEEEECCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEE
TSGMRMGVLGQDQYAFEDLSLKDAVLIGNKRLYDAIKEKERLYTEGDLSDDKVNARLGEL
ECCCEECCCCCCCHHHCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCE
ETICVEEDPMYECEVVIEKILEDLGIPSSRHNDLMKTLPSSDKFKILLAQVLFPKPDILL
EEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCCCEEE
LDEPTNNLDLNAIEWLENNLKRHEGTMVVISHDRHFLNAVCTHILDLDFHSVREFSGNYD
EECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCHHHHHHHCCCCC
DWYIASTLIAKQQEAERNKKLKEKEELEKFIARFSANASKAKQATSRQKQLDKLDIQSLA
CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
ISSRRDPSIIFKPKRTIGNEALECENISKSYDGQIVLNQVSLKVMPKDKIALIGPNGVGK
HCCCCCCCEEECCCHHCCCCHHHHHCCCCCCCCEEEEEEEEEEEECCCCEEEECCCCCCH
STLCKILVEELKPDTGVVKWGATVLKGYFPQNVSEEISGEETLYQWLFNFNKKIESAEVR
HHHHHHHHHHCCCCCCEEHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHH
NALGRMLFNGEEQEKCVNALSGGEKHRMVLSKLMLEGGNFLVLDEPTNHLDLEAIIALGE
HHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHH
ALFKFDGALICVSHDRELIDAYANRIIELVPGPKGASIIDFKGSYEEYLASKK
HHHHCCCEEEEEECCHHHHHHHHHHEEEECCCCCCCEEEECCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]