| Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
|---|---|
| Accession | NC_008086 |
| Length | 1,596,366 |
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The map label for this gene is fecA [H]
Identifier: 108563217
GI number: 108563217
Start: 829014
End: 831392
Strand: Reverse
Name: fecA [H]
Synonym: HPAG1_0792
Alternate gene names: 108563217
Gene position: 831392-829014 (Counterclockwise)
Preceding gene: 108563218
Following gene: 108563215
Centisome position: 52.08
GC content: 42.16
Gene sequence:
>2379_bases ATGAATGGTTATTTGAGGGTAAAAACCCCGTATTTTTTAGCGTTGGGCGTTTTGATTTTTTGGGCTTTTAATTCTTTTAT GAGCGCGAAAGATAAGCACCATTTTTTAAAAAAAGTTACAACCACTGAGCAAAAATTCAATTCCAGCGCGCCGCTTTCAT ATCAAAGCGAAGAGGTGCGTAATTCCACAAGCTCTCGCACGGTGATTTCCAACAAAGAACTCAAAAAAACGGGGAATTTG AATATTGAAAACGCCTTGCAAAACGTGCCAGGGATTCAAATCAGAGACGCTACAGGCACAGGCGTGCTACCTAAAATTTC GGTGCGCGGTTTTGGTGGGGGCGGTAACGGGCATAGCAATACGGGCATGATTTTAGTCAATGGTATCCCCATTTATGGCG CGCCGTATTCCAATATTGAACTGGCGATTTTCCCCGTTACTTTCCAGTCAGTGGATAGGATTGATGTGATTAAAGGGGGC ACGAGCGTGCAATACGGCCCTAACACCTTTGGAGGCGTGGTGAATATCATCACTAAAGAAATCCCTAAAGAGTGGGAAAA TCAAGCGGCTGAAAGGATCACTTTTTGGGGGCGATCCTCTAATGGGAATTTTGTAGATCCTAAAGAAAAAGGCAAGCCTT TAGCACAAACTTTAGGCAATCAGATGCTGTTTAACACTTACGGGCGGACGGCTGGAATGTTGGGTAAGCATGTAGGAATT AGCATGCAGGGCAATTGGATTAATGGGCAAGGTTTCAGGAAAAACAGCCCTACAAAGGTGCAAAACTACTTGCTTGATGC GGTTTATAAGATTAATGCGACCAATACTTTTAAAGCTTATTACCAATATTATCAATACAATTCTTACCATCCAGGCACTT TGAGCGCGCAAGATTATGCCTATAACCGCTTTATTAATGAGCGCCCTGACAATCAAGATGGAGGGCGAGCCAAGCGCTTT GGGATCGTGTATCAAAATTATTTTGGCGACCCGGATAGGAAAGTGGGGGGAGATTTTAAATTCACTTATTTCACGCATGA CATGAGCAGGGATTTTGGGTTTTCCAACCAATACCAAAGCGTGTATATGAGCAGTCAAAACAAGATTTTACCCTTTAAAG GCAAGGGAAAAATTAGCGCGACTAACCCTAATTGCGGTTTGTATTCTTATAGCGACACGAATAGCCCTTGCTGGCAATTT TTTGACAACTTGCGCCGCTTCGTGGTGAATGCTTTTGAGCCAAAACTCAATCTTATCGTCAATACCGGTAAAGTCAAGCA AACTTTTAATATGGGAATGCGGTTTTTAACTGAAGATTTATACCGCCGATCCACCACCAGGAAAAACCCTAGCGTGCCTA ATAATGGGAGTGGGTTTGATGCAGGAACTTCACTCAATAATTTCAACAATTATACCACTGTGTATGCCAGCGATGAAATC AATTTCAATAACGGCATGCTAACGATCACGCCGGGTTTGAGATACACTTTTTTAAATTACGAAAAAAAAGACGCTCCCCC TTTTAAAGCAGGCCAAACAGGAAAAACCATTAAAGATCGTTATAACCAATGGAATCCGGCGCTGAATATCGGCTATAAAC CCATTAAGGATTGGTTGTTTTATTTCAATTACCAAAAAAGCTACATTCCGCCCCAATTCAGCAATATCGGTAATTTTGTA GGCACAAGCACGGATTATTTTCAAATCTTTAATGTCATGGAGGGCGGCTCAAGATATTATTTTAACCATCAAGTGAGTTT TAACGCGAACTATTTTGTGATTTTTGCGAATCATTATTTTACCGGGCGCTATGGAGATAATAAAGAGCCGGTCAATGCGA GATCGCAAGGCGTGGAGCTGGAATTGTATTACACGCCTATTAGAGGGCTTAATTTCCATGCGGCTTACACTTTTATAGAC GCTAATATCACCAGCCACACGATGGTTACTAACCCTGCTAATCCTAAAGGGCCTAAAAAAGATATTTTTGGCAAAAAACT CCCTTTTGTCAGCCCGCACCAATTCATTTTAGACGCGAGTTACACTTACGCTAAAACCACGATTGGGTTAAGCTCTTTCT TTTATAGCACGGCTTATAGCGATGTGTTAAACACCGTGCCTTTTACAGAATACGCGCCCACGATCAAAAATGGGGCCATC ACCACCAAAACAGCGGGCATGACGCCATACTATTGGGTGTGGAATTTGCAAATTTCTAGCACTTTGTGGGAACGCAAAAA GCAAAGCGTTAATGCGAGCTTGCAAATCAATAACATTTTTAACATGAAATATTGGTTTAGCGGGATAGGCACTAGCCCTA ACGGGAAAGAAGCCGCACCTCCCAGAAGCATCACGGCGTATGTGAGCTATAATTTTTAA
Upstream 100 bases:
>100_bases GAATTGTAAAAAAATAAGATTGATTTTCAATTCTTAAGATGATATAATAATTATTCTTATAGTATGCATCGGTTTGAATT AAATGAGAAAGGTTATCATA
Downstream 100 bases:
>100_bases TTTTAGGGTTGTAATGTTTTGAGAAGTTGGGCGTAAAAAATGATATTTTGTTTTAAACGCTCTCTTAGAGTGCGGTAATT AGGGCAAAAGATTTGAACGC
Product: iron(III) dicitrate transport protein
Products: NA
Alternate protein names: Iron(III) dicitrate transport protein fecA [H]
Number of amino acids: Translated: 792; Mature: 792
Protein sequence:
>792_residues MNGYLRVKTPYFLALGVLIFWAFNSFMSAKDKHHFLKKVTTTEQKFNSSAPLSYQSEEVRNSTSSRTVISNKELKKTGNL NIENALQNVPGIQIRDATGTGVLPKISVRGFGGGGNGHSNTGMILVNGIPIYGAPYSNIELAIFPVTFQSVDRIDVIKGG TSVQYGPNTFGGVVNIITKEIPKEWENQAAERITFWGRSSNGNFVDPKEKGKPLAQTLGNQMLFNTYGRTAGMLGKHVGI SMQGNWINGQGFRKNSPTKVQNYLLDAVYKINATNTFKAYYQYYQYNSYHPGTLSAQDYAYNRFINERPDNQDGGRAKRF GIVYQNYFGDPDRKVGGDFKFTYFTHDMSRDFGFSNQYQSVYMSSQNKILPFKGKGKISATNPNCGLYSYSDTNSPCWQF FDNLRRFVVNAFEPKLNLIVNTGKVKQTFNMGMRFLTEDLYRRSTTRKNPSVPNNGSGFDAGTSLNNFNNYTTVYASDEI NFNNGMLTITPGLRYTFLNYEKKDAPPFKAGQTGKTIKDRYNQWNPALNIGYKPIKDWLFYFNYQKSYIPPQFSNIGNFV GTSTDYFQIFNVMEGGSRYYFNHQVSFNANYFVIFANHYFTGRYGDNKEPVNARSQGVELELYYTPIRGLNFHAAYTFID ANITSHTMVTNPANPKGPKKDIFGKKLPFVSPHQFILDASYTYAKTTIGLSSFFYSTAYSDVLNTVPFTEYAPTIKNGAI TTKTAGMTPYYWVWNLQISSTLWERKKQSVNASLQINNIFNMKYWFSGIGTSPNGKEAAPPRSITAYVSYNF
Sequences:
>Translated_792_residues MNGYLRVKTPYFLALGVLIFWAFNSFMSAKDKHHFLKKVTTTEQKFNSSAPLSYQSEEVRNSTSSRTVISNKELKKTGNL NIENALQNVPGIQIRDATGTGVLPKISVRGFGGGGNGHSNTGMILVNGIPIYGAPYSNIELAIFPVTFQSVDRIDVIKGG TSVQYGPNTFGGVVNIITKEIPKEWENQAAERITFWGRSSNGNFVDPKEKGKPLAQTLGNQMLFNTYGRTAGMLGKHVGI SMQGNWINGQGFRKNSPTKVQNYLLDAVYKINATNTFKAYYQYYQYNSYHPGTLSAQDYAYNRFINERPDNQDGGRAKRF GIVYQNYFGDPDRKVGGDFKFTYFTHDMSRDFGFSNQYQSVYMSSQNKILPFKGKGKISATNPNCGLYSYSDTNSPCWQF FDNLRRFVVNAFEPKLNLIVNTGKVKQTFNMGMRFLTEDLYRRSTTRKNPSVPNNGSGFDAGTSLNNFNNYTTVYASDEI NFNNGMLTITPGLRYTFLNYEKKDAPPFKAGQTGKTIKDRYNQWNPALNIGYKPIKDWLFYFNYQKSYIPPQFSNIGNFV GTSTDYFQIFNVMEGGSRYYFNHQVSFNANYFVIFANHYFTGRYGDNKEPVNARSQGVELELYYTPIRGLNFHAAYTFID ANITSHTMVTNPANPKGPKKDIFGKKLPFVSPHQFILDASYTYAKTTIGLSSFFYSTAYSDVLNTVPFTEYAPTIKNGAI TTKTAGMTPYYWVWNLQISSTLWERKKQSVNASLQINNIFNMKYWFSGIGTSPNGKEAAPPRSITAYVSYNF >Mature_792_residues MNGYLRVKTPYFLALGVLIFWAFNSFMSAKDKHHFLKKVTTTEQKFNSSAPLSYQSEEVRNSTSSRTVISNKELKKTGNL NIENALQNVPGIQIRDATGTGVLPKISVRGFGGGGNGHSNTGMILVNGIPIYGAPYSNIELAIFPVTFQSVDRIDVIKGG TSVQYGPNTFGGVVNIITKEIPKEWENQAAERITFWGRSSNGNFVDPKEKGKPLAQTLGNQMLFNTYGRTAGMLGKHVGI SMQGNWINGQGFRKNSPTKVQNYLLDAVYKINATNTFKAYYQYYQYNSYHPGTLSAQDYAYNRFINERPDNQDGGRAKRF GIVYQNYFGDPDRKVGGDFKFTYFTHDMSRDFGFSNQYQSVYMSSQNKILPFKGKGKISATNPNCGLYSYSDTNSPCWQF FDNLRRFVVNAFEPKLNLIVNTGKVKQTFNMGMRFLTEDLYRRSTTRKNPSVPNNGSGFDAGTSLNNFNNYTTVYASDEI NFNNGMLTITPGLRYTFLNYEKKDAPPFKAGQTGKTIKDRYNQWNPALNIGYKPIKDWLFYFNYQKSYIPPQFSNIGNFV GTSTDYFQIFNVMEGGSRYYFNHQVSFNANYFVIFANHYFTGRYGDNKEPVNARSQGVELELYYTPIRGLNFHAAYTFID ANITSHTMVTNPANPKGPKKDIFGKKLPFVSPHQFILDASYTYAKTTIGLSSFFYSTAYSDVLNTVPFTEYAPTIKNGAI TTKTAGMTPYYWVWNLQISSTLWERKKQSVNASLQINNIFNMKYWFSGIGTSPNGKEAAPPRSITAYVSYNF
Specific function: FecA is the outer membrane receptor protein in the Fe(3+) dicitrate transport system [H]
COG id: COG4772
COG function: function code P; Outer membrane receptor for Fe3+-dicitrate
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1790743, Length=750, Percent_Identity=24.5333333333333, Blast_Score=182, Evalue=8e-47, Organism=Escherichia coli, GI1788478, Length=134, Percent_Identity=32.089552238806, Blast_Score=67, Evalue=6e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR011662 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010917 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF07660 STN; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 89613; Mature: 89613
Theoretical pI: Translated: 9.96; Mature: 9.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNGYLRVKTPYFLALGVLIFWAFNSFMSAKDKHHFLKKVTTTEQKFNSSAPLSYQSEEVR CCCEEEECCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH NSTSSRTVISNKELKKTGNLNIENALQNVPGIQIRDATGTGVLPKISVRGFGGGGNGHSN CCCCCCEEECCCHHHHCCCCCHHHHHHCCCCEEEECCCCCCCCCEEEEEEECCCCCCCCC TGMILVNGIPIYGAPYSNIELAIFPVTFQSVDRIDVIKGGTSVQYGPNTFGGVVNIITKE CCEEEEECEEEECCCCCCCEEEEEEEECCCCCEEEEEECCCEEEECCCHHHHHHHHHHHH IPKEWENQAAERITFWGRSSNGNFVDPKEKGKPLAQTLGNQMLFNTYGRTAGMLGKHVGI CCHHHHHHHHHEEEEEEECCCCCCCCCHHCCCHHHHHHCCCEEEHHCCCHHHHHHHHEEE SMQGNWINGQGFRKNSPTKVQNYLLDAVYKINATNTFKAYYQYYQYNSYHPGTLSAQDYA EEECCEECCCCCCCCCCHHHHHHHHHHEEEECCCCHHHHHHHHHHCCCCCCCCCCCCHHH YNRFINERPDNQDGGRAKRFGIVYQNYFGDPDRKVGGDFKFTYFTHDMSRDFGFSNQYQS HHHHHCCCCCCCCCCCEEEEEEEEHHHCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCE VYMSSQNKILPFKGKGKISATNPNCGLYSYSDTNSPCWQFFDNLRRFVVNAFEPKLNLIV EEECCCCCEEEECCCCEEEECCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEE NTGKVKQTFNMGMRFLTEDLYRRSTTRKNPSVPNNGSGFDAGTSLNNFNNYTTVYASDEI ECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCE NFNNGMLTITPGLRYTFLNYEKKDAPPFKAGQTGKTIKDRYNQWNPALNIGYKPIKDWLF ECCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCEEECCCHHHHHHEE YFNYQKSYIPPQFSNIGNFVGTSTDYFQIFNVMEGGSRYYFNHQVSFNANYFVIFANHYF EEECCCCCCCCCHHHCCHHCCCCCHHHHHHHHHCCCCEEEEEEEEEECCCEEEEEEEEEE TGRYGDNKEPVNARSQGVELELYYTPIRGLNFHAAYTFIDANITSHTMVTNPANPKGPKK ECCCCCCCCCCCHHHCCEEEEEEEECCCCCEEEEEEEEEECCCCCCEEEECCCCCCCCCH DIFGKKLPFVSPHQFILDASYTYAKTTIGLSSFFYSTAYSDVLNTVPFTEYAPTIKNGAI HHCCCCCCCCCCCCEEEECCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEE TTKTAGMTPYYWVWNLQISSTLWERKKQSVNASLQINNIFNMKYWFSGIGTSPNGKEAAP EEECCCCCEEEEEEEEEEHHHHHHHHHHCCCCEEEEEEEEEEEEEEEECCCCCCCCCCCC PRSITAYVSYNF CCCEEEEEEECC >Mature Secondary Structure MNGYLRVKTPYFLALGVLIFWAFNSFMSAKDKHHFLKKVTTTEQKFNSSAPLSYQSEEVR CCCEEEECCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH NSTSSRTVISNKELKKTGNLNIENALQNVPGIQIRDATGTGVLPKISVRGFGGGGNGHSN CCCCCCEEECCCHHHHCCCCCHHHHHHCCCCEEEECCCCCCCCCEEEEEEECCCCCCCCC TGMILVNGIPIYGAPYSNIELAIFPVTFQSVDRIDVIKGGTSVQYGPNTFGGVVNIITKE CCEEEEECEEEECCCCCCCEEEEEEEECCCCCEEEEEECCCEEEECCCHHHHHHHHHHHH IPKEWENQAAERITFWGRSSNGNFVDPKEKGKPLAQTLGNQMLFNTYGRTAGMLGKHVGI CCHHHHHHHHHEEEEEEECCCCCCCCCHHCCCHHHHHHCCCEEEHHCCCHHHHHHHHEEE SMQGNWINGQGFRKNSPTKVQNYLLDAVYKINATNTFKAYYQYYQYNSYHPGTLSAQDYA EEECCEECCCCCCCCCCHHHHHHHHHHEEEECCCCHHHHHHHHHHCCCCCCCCCCCCHHH YNRFINERPDNQDGGRAKRFGIVYQNYFGDPDRKVGGDFKFTYFTHDMSRDFGFSNQYQS HHHHHCCCCCCCCCCCEEEEEEEEHHHCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCE VYMSSQNKILPFKGKGKISATNPNCGLYSYSDTNSPCWQFFDNLRRFVVNAFEPKLNLIV EEECCCCCEEEECCCCEEEECCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEE NTGKVKQTFNMGMRFLTEDLYRRSTTRKNPSVPNNGSGFDAGTSLNNFNNYTTVYASDEI ECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCE NFNNGMLTITPGLRYTFLNYEKKDAPPFKAGQTGKTIKDRYNQWNPALNIGYKPIKDWLF ECCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCEEECCCHHHHHHEE YFNYQKSYIPPQFSNIGNFVGTSTDYFQIFNVMEGGSRYYFNHQVSFNANYFVIFANHYF EEECCCCCCCCCHHHCCHHCCCCCHHHHHHHHHCCCCEEEEEEEEEECCCEEEEEEEEEE TGRYGDNKEPVNARSQGVELELYYTPIRGLNFHAAYTFIDANITSHTMVTNPANPKGPKK ECCCCCCCCCCCHHHCCEEEEEEEECCCCCEEEEEEEEEECCCCCCEEEECCCCCCCCCH DIFGKKLPFVSPHQFILDASYTYAKTTIGLSSFFYSTAYSDVLNTVPFTEYAPTIKNGAI HHCCCCCCCCCCCCEEEECCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEE TTKTAGMTPYYWVWNLQISSTLWERKKQSVNASLQINNIFNMKYWFSGIGTSPNGKEAAP EEECCCCCEEEEEEEEEEHHHHHHHHHHCCCCEEEEEEEEEEEEEEEECCCCCCCCCCCC PRSITAYVSYNF CCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2836368; 7610040; 9278503; 2254251; 2651410 [H]