| Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
|---|---|
| Accession | NC_008086 |
| Length | 1,596,366 |
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The map label for this gene is 108563206
Identifier: 108563206
GI number: 108563206
Start: 821118
End: 821912
Strand: Reverse
Name: 108563206
Synonym: HPAG1_0781
Alternate gene names: NA
Gene position: 821912-821118 (Counterclockwise)
Preceding gene: 108563207
Following gene: 108563205
Centisome position: 51.49
GC content: 38.24
Gene sequence:
>795_bases TTGAGCGTGTATTTAAGGGCTGATGATCTGGTTACTTACACCATCATCAAAAAAGAAGATCTAGGATTCCAGCGGTTTTT AGCAAAGAAGTGTTTAAGGGGCAAAGCCCCTCCATGTTTTGCTGAGCCTAAAAAACCCAAAAAAAAACTTTTTAATATAG ACAAAAGCTCCCACTATTATGGCACAAGCGTGGTGCAAATGTCATGGCTACAGAGTAGGGAAAGATTTGAAAACCATTCA AAATACCGAGACATTCCTTTTGCTGAAGTCAGTTTGATTTATGGCTATAAACAATTTTTTCCTAAAAAAGAGCGCTACGG CTTCCGTTTTTATGTCTCTTTGGATTACGCTTATGGGTTTTTTCTTAAAAATAAGGGCGTGTTGGGCGATAGTTTGAGGG AGAGTTCGCAGATCCCTAAAAGCTATAGAGAAAAATTGCAAAGAAAAGAGACTTTTATTAACGCTATTTTTTATGGCGCA GGAGCTGACTTTTTATACAAACGCGCTTTTGGAACGCTGATTTTAGGGATGAATTTCGTGGGCGAAACCTGGTTTTATGA AACAAAGATTTTTAAAAAGTGGGCTAAAGATCCTTTGAGCGTTTATCACCCTTACATGTTTCAAGTGATGCTGAATGTGG GGTATCGTTACCGCTTTTCAAGGTATAAGAATTGGGCGATAGAATTGGGCGCGCGCATCCCCTTTTTAACCAATGATTAT TTTAAAACCCCTTTATACACCCTTCATTTCAAGCGCAATATTTCTGTCTATCTCACTTCAACTTATGACTTTTAG
Upstream 100 bases:
>100_bases CGCCAAGGAATTAAAAGGCAAAAGAAACCGATAAAGACAAATAACGCATAAGAAAAGAACGCTTGAACAAACTGCTTAAA AAGGGTTTTTAGCGTTCTTT
Downstream 100 bases:
>100_bases TTTTTTAAATTTTTGAAAACTAGAATTAAAACCGCTTTTTATAAACCGGAATTAAAACAAATTAAGCTATAATGATACAA AAATTTAATTTTTTAGCCAT
Product: outer membrane protein HorG
Products: NA
Alternate protein names: Outer Membrane Protein HorG
Number of amino acids: Translated: 264; Mature: 263
Protein sequence:
>264_residues MSVYLRADDLVTYTIIKKEDLGFQRFLAKKCLRGKAPPCFAEPKKPKKKLFNIDKSSHYYGTSVVQMSWLQSRERFENHS KYRDIPFAEVSLIYGYKQFFPKKERYGFRFYVSLDYAYGFFLKNKGVLGDSLRESSQIPKSYREKLQRKETFINAIFYGA GADFLYKRAFGTLILGMNFVGETWFYETKIFKKWAKDPLSVYHPYMFQVMLNVGYRYRFSRYKNWAIELGARIPFLTNDY FKTPLYTLHFKRNISVYLTSTYDF
Sequences:
>Translated_264_residues MSVYLRADDLVTYTIIKKEDLGFQRFLAKKCLRGKAPPCFAEPKKPKKKLFNIDKSSHYYGTSVVQMSWLQSRERFENHS KYRDIPFAEVSLIYGYKQFFPKKERYGFRFYVSLDYAYGFFLKNKGVLGDSLRESSQIPKSYREKLQRKETFINAIFYGA GADFLYKRAFGTLILGMNFVGETWFYETKIFKKWAKDPLSVYHPYMFQVMLNVGYRYRFSRYKNWAIELGARIPFLTNDY FKTPLYTLHFKRNISVYLTSTYDF >Mature_263_residues SVYLRADDLVTYTIIKKEDLGFQRFLAKKCLRGKAPPCFAEPKKPKKKLFNIDKSSHYYGTSVVQMSWLQSRERFENHSK YRDIPFAEVSLIYGYKQFFPKKERYGFRFYVSLDYAYGFFLKNKGVLGDSLRESSQIPKSYREKLQRKETFINAIFYGAG ADFLYKRAFGTLILGMNFVGETWFYETKIFKKWAKDPLSVYHPYMFQVMLNVGYRYRFSRYKNWAIELGARIPFLTNDYF KTPLYTLHFKRNISVYLTSTYDF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31558; Mature: 31427
Theoretical pI: Translated: 10.20; Mature: 10.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVYLRADDLVTYTIIKKEDLGFQRFLAKKCLRGKAPPCFAEPKKPKKKLFNIDKSSHYY CEEEEEECCEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCC GTSVVQMSWLQSRERFENHSKYRDIPFAEVSLIYGYKQFFPKKERYGFRFYVSLDYAYGF CHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECEEEE FLKNKGVLGDSLRESSQIPKSYREKLQRKETFINAIFYGAGADFLYKRAFGTLILGMNFV EEECCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH GETWFYETKIFKKWAKDPLSVYHPYMFQVMLNVGYRYRFSRYKNWAIELGARIPFLTNDY CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEHHHHCCEEEEECCCCCEEECCC FKTPLYTLHFKRNISVYLTSTYDF CCCCEEEEEEECCEEEEEEEECCC >Mature Secondary Structure SVYLRADDLVTYTIIKKEDLGFQRFLAKKCLRGKAPPCFAEPKKPKKKLFNIDKSSHYY EEEEEECCEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCC GTSVVQMSWLQSRERFENHSKYRDIPFAEVSLIYGYKQFFPKKERYGFRFYVSLDYAYGF CHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECEEEE FLKNKGVLGDSLRESSQIPKSYREKLQRKETFINAIFYGAGADFLYKRAFGTLILGMNFV EEECCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH GETWFYETKIFKKWAKDPLSVYHPYMFQVMLNVGYRYRFSRYKNWAIELGARIPFLTNDY CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEHHHHCCEEEEECCCCCEEECCC FKTPLYTLHFKRNISVYLTSTYDF CCCCEEEEEEECCEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA