| Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
|---|---|
| Accession | NC_008086 |
| Length | 1,596,366 |
Click here to switch to the map view.
The map label for this gene is 108563148
Identifier: 108563148
GI number: 108563148
Start: 761284
End: 762009
Strand: Direct
Name: 108563148
Synonym: HPAG1_0723
Alternate gene names: NA
Gene position: 761284-762009 (Clockwise)
Preceding gene: 108563147
Following gene: 108563149
Centisome position: 47.69
GC content: 36.64
Gene sequence:
>726_bases ATGGCCAAACGCAGTATCGCTTATTTGGATAGCGTTTTTGACATTTCCTACACTTTTATAGATAACCATAGCCCTTTAAA CGCCTTGTTTTTGCATGGTTGGGGGAGTTCTAAGGAAATCATGCAACAAGCGTTTCAAGGCTGTTTTTTAAATTATAATC ATTTGTATGTGGATTTGCCCGGCTTCAATCAAAGCCCTAACGATGAAAAAGTCTTAGAGACTAAAGATTATGCTAATATC ATCAATCTGTTCTTAAAAAGCGTGGATAAAAAAGCGCATGTCGTTTTTGGGCATAGCTTTGGAGGGAAAGTGGCGATTTT GTGTGAAAACGAACGGATGGTTTTATTGAGCAGCGCCGGGATTTTAGAGCCAAAACCTTTAAAAGTGCGTTGTAAAATCC TTTTAGCTAAAATCCTTAAAAAATTAGGCTTGAATTTAGGGTTTTTGAGGAGTAAGGACGCTATGGGGCTTAATCAAGTG ATGTATGAAACCTTTAAAAAAGTGATTAGCGAAGACTTTAGCGATCATTTCAAACGATGCGAGAAGGAAGTTTTATTATT TTGGGGTAAAGATGATAAAGCAACCCCCTTAAGCTCCGCTCAAAAAATGCAAACCTTATTGAAAAAGAGCGAATTATTCG TTTTAGAAGGGGATCATTTCTTTTTTTTAAACCAAGCAAAAGAGATTGAAAAACTAGTGGAGAATTACCATCATGCAAAG TCTTAG
Upstream 100 bases:
>100_bases ATTTTAAAACAACGCTAGAAAATTTAGCGCAATCATTACCCAAAACCCCTAAAATCCAAATCAAAAACTCTTATTTGTTG CAGATCCAAAAGAATAAGTA
Downstream 100 bases:
>100_bases TTGGCTGAATTTAGCGTTCCGTTGGCTCTTTATAACAGGGCTTGGCTATTATATAATGACTTTATTGCAATGGTATCATT ACAGCGTGTTTCGGATCTTA
Product: 2-hydroxy-6-oxohepta-2,4-dienoate hydrolase
Products: NA
Alternate protein names: Alpha/Beta Hydrolase Fold; Alpha/Beta Hydrolase Fold Protein; Alpha/Beta Hydrolase; Carboxylesterase BioH; Hydrolase Alpha/Beta Fold Family
Number of amino acids: Translated: 241; Mature: 240
Protein sequence:
>241_residues MAKRSIAYLDSVFDISYTFIDNHSPLNALFLHGWGSSKEIMQQAFQGCFLNYNHLYVDLPGFNQSPNDEKVLETKDYANI INLFLKSVDKKAHVVFGHSFGGKVAILCENERMVLLSSAGILEPKPLKVRCKILLAKILKKLGLNLGFLRSKDAMGLNQV MYETFKKVISEDFSDHFKRCEKEVLLFWGKDDKATPLSSAQKMQTLLKKSELFVLEGDHFFFLNQAKEIEKLVENYHHAK S
Sequences:
>Translated_241_residues MAKRSIAYLDSVFDISYTFIDNHSPLNALFLHGWGSSKEIMQQAFQGCFLNYNHLYVDLPGFNQSPNDEKVLETKDYANI INLFLKSVDKKAHVVFGHSFGGKVAILCENERMVLLSSAGILEPKPLKVRCKILLAKILKKLGLNLGFLRSKDAMGLNQV MYETFKKVISEDFSDHFKRCEKEVLLFWGKDDKATPLSSAQKMQTLLKKSELFVLEGDHFFFLNQAKEIEKLVENYHHAK S >Mature_240_residues AKRSIAYLDSVFDISYTFIDNHSPLNALFLHGWGSSKEIMQQAFQGCFLNYNHLYVDLPGFNQSPNDEKVLETKDYANII NLFLKSVDKKAHVVFGHSFGGKVAILCENERMVLLSSAGILEPKPLKVRCKILLAKILKKLGLNLGFLRSKDAMGLNQVM YETFKKVISEDFSDHFKRCEKEVLLFWGKDDKATPLSSAQKMQTLLKKSELFVLEGDHFFFLNQAKEIEKLVENYHHAKS
Specific function: Unknown
COG id: COG0596
COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27558; Mature: 27427
Theoretical pI: Translated: 8.84; Mature: 8.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKRSIAYLDSVFDISYTFIDNHSPLNALFLHGWGSSKEIMQQAFQGCFLNYNHLYVDLP CCCCHHHHHHHHHHEEEEEECCCCCCEEEEEECCCCCHHHHHHHHHHHEECCCEEEEECC GFNQSPNDEKVLETKDYANIINLFLKSVDKKAHVVFGHSFGGKVAILCENERMVLLSSAG CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEECCCCEEEEECCC ILEPKPLKVRCKILLAKILKKLGLNLGFLRSKDAMGLNQVMYETFKKVISEDFSDHFKRC CCCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH EKEVLLFWGKDDKATPLSSAQKMQTLLKKSELFVLEGDHFFFLNQAKEIEKLVENYHHAK HHHEEEEECCCCCCCCCHHHHHHHHHHHHCCEEEEECCEEEEECHHHHHHHHHHHHHCCC S C >Mature Secondary Structure AKRSIAYLDSVFDISYTFIDNHSPLNALFLHGWGSSKEIMQQAFQGCFLNYNHLYVDLP CCCHHHHHHHHHHEEEEEECCCCCCEEEEEECCCCCHHHHHHHHHHHEECCCEEEEECC GFNQSPNDEKVLETKDYANIINLFLKSVDKKAHVVFGHSFGGKVAILCENERMVLLSSAG CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEECCCCEEEEECCC ILEPKPLKVRCKILLAKILKKLGLNLGFLRSKDAMGLNQVMYETFKKVISEDFSDHFKRC CCCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH EKEVLLFWGKDDKATPLSSAQKMQTLLKKSELFVLEGDHFFFLNQAKEIEKLVENYHHAK HHHEEEEECCCCCCCCCHHHHHHHHHHHHCCEEEEECCEEEEECHHHHHHHHHHHHHCCC S C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA