Definition Helicobacter pylori HPAG1 chromosome, complete genome.
Accession NC_008086
Length 1,596,366

Click here to switch to the map view.

The map label for this gene is 108563142

Identifier: 108563142

GI number: 108563142

Start: 755492

End: 756550

Strand: Reverse

Name: 108563142

Synonym: HPAG1_0717

Alternate gene names: NA

Gene position: 756550-755492 (Counterclockwise)

Preceding gene: 108563143

Following gene: 108563141

Centisome position: 47.39

GC content: 34.56

Gene sequence:

>1059_bases
ATGAGGGCAAAAATGAAAAACATTTATCTTGATGTGAAAGCCAGCATTGAAAATCTCCAAAATATTTTTAAGAACACTGA
TAATGAAAATGAAAGACTAAAAAAATCCAATCAAGAAGCGTTGGAGGTGTTTCAAAAATTAGAATTTGAAAGCTTAAAAG
AGCTTGAAAGTTTAAAAAATAATGAAGAGTGGGAAAATTTTACCATCGCCTTTTATGGGGAAACCGGTGCGGGGAAATCA
ACCCTCATTGAATGCTTGAGAATGTTTTTTAAAGAACAAAGTAAAGTAGATCAACAAAAACGATTCAAGCGGCTTTATTC
AACTTACCAAAAGAACTATCAAAATGATGAACGCAACAAACAGGCTATTTTAAACGAACTCCATTCATTGCAAGATGGAG
CGATTATAGGCGATGGGAGGAGCGATTTCACTTTAAAAACACAATCTTATTCTTTCCAATACAACCATCAAACCTTTACT
TTGCTGGATGTTCCAGGGATAGAAGGCAGCGAAAAAAAAGTTATTCAGCAAATTTCTAACGCAACGCAAAAAGCCCATGC
TATTTTTTATGTTACCAAAACGCCTAATCCTCCGCAAAAAGGAGAAGAAAGAAAAGAAGGAACGATTGAAAAAATCCAAA
GACAACTCGGTTTGCAAACAGAGGTATGGACGATTTTCAACAAACCGATTAACAACCCAAGAGCTTTTAAAGATGGGCTT
ATTGATGGAAGCGAAAAAGAAAGCTTAAAAATTTTAAATAAAGAAATGAAAAACATTTTAGGCAAACACTACATGGGGCA
TCAAATAGTCAGCACCCAAATGGCTTTCTATGGTCTTGCATCGGCGTTGCTGCCAGAAAGTGATTTTTACAAAAACAAAC
AAAAATTTTTAGATTTTTTTAAAGCGGAAGAATGGTTATTGTATAAATCCCGTTTCCAACAATTAGGAGAATTTATAACC
GAAGCGCTTCTTGAAAACTCACGCAAAAAAATCATAGAATCCAACTGCAACAAAGCCTTAAAAGCAAAAATTACAAGAAG
CGATCAAAACCACGATTGA

Upstream 100 bases:

>100_bases
TAAGCCCTTTTTAAAAGTTAGGGCTAAAAGCGCGGCTATAGCGTGGCTAGAGGGTGGGGGTTTGCGTTTTTTTTGTTAAA
ATGCGTCAGAAAAATTCGGC

Downstream 100 bases:

>100_bases
CAGACAGATAGATCCAACCATCAGAGAAATAAAGAATCACCACCAAGAAATTTGTGATAATTTGAATCGTTCTAAAGAAA
AATTTATATCAGATTTGAAA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 352; Mature: 352

Protein sequence:

>352_residues
MRAKMKNIYLDVKASIENLQNIFKNTDNENERLKKSNQEALEVFQKLEFESLKELESLKNNEEWENFTIAFYGETGAGKS
TLIECLRMFFKEQSKVDQQKRFKRLYSTYQKNYQNDERNKQAILNELHSLQDGAIIGDGRSDFTLKTQSYSFQYNHQTFT
LLDVPGIEGSEKKVIQQISNATQKAHAIFYVTKTPNPPQKGEERKEGTIEKIQRQLGLQTEVWTIFNKPINNPRAFKDGL
IDGSEKESLKILNKEMKNILGKHYMGHQIVSTQMAFYGLASALLPESDFYKNKQKFLDFFKAEEWLLYKSRFQQLGEFIT
EALLENSRKKIIESNCNKALKAKITRSDQNHD

Sequences:

>Translated_352_residues
MRAKMKNIYLDVKASIENLQNIFKNTDNENERLKKSNQEALEVFQKLEFESLKELESLKNNEEWENFTIAFYGETGAGKS
TLIECLRMFFKEQSKVDQQKRFKRLYSTYQKNYQNDERNKQAILNELHSLQDGAIIGDGRSDFTLKTQSYSFQYNHQTFT
LLDVPGIEGSEKKVIQQISNATQKAHAIFYVTKTPNPPQKGEERKEGTIEKIQRQLGLQTEVWTIFNKPINNPRAFKDGL
IDGSEKESLKILNKEMKNILGKHYMGHQIVSTQMAFYGLASALLPESDFYKNKQKFLDFFKAEEWLLYKSRFQQLGEFIT
EALLENSRKKIIESNCNKALKAKITRSDQNHD
>Mature_352_residues
MRAKMKNIYLDVKASIENLQNIFKNTDNENERLKKSNQEALEVFQKLEFESLKELESLKNNEEWENFTIAFYGETGAGKS
TLIECLRMFFKEQSKVDQQKRFKRLYSTYQKNYQNDERNKQAILNELHSLQDGAIIGDGRSDFTLKTQSYSFQYNHQTFT
LLDVPGIEGSEKKVIQQISNATQKAHAIFYVTKTPNPPQKGEERKEGTIEKIQRQLGLQTEVWTIFNKPINNPRAFKDGL
IDGSEKESLKILNKEMKNILGKHYMGHQIVSTQMAFYGLASALLPESDFYKNKQKFLDFFKAEEWLLYKSRFQQLGEFIT
EALLENSRKKIIESNCNKALKAKITRSDQNHD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 41049; Mature: 41049

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAKMKNIYLDVKASIENLQNIFKNTDNENERLKKSNQEALEVFQKLEFESLKELESLKN
CCCCHHHHEEHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCHHHHHHHHHHCC
NEEWENFTIAFYGETGAGKSTLIECLRMFFKEQSKVDQQKRFKRLYSTYQKNYQNDERNK
CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
QAILNELHSLQDGAIIGDGRSDFTLKTQSYSFQYNHQTFTLLDVPGIEGSEKKVIQQISN
HHHHHHHHHHCCCCEEECCCCCEEEEECCEEEEECCCEEEEEECCCCCCHHHHHHHHHHH
ATQKAHAIFYVTKTPNPPQKGEERKEGTIEKIQRQLGLQTEVWTIFNKPINNPRAFKDGL
HHHHHEEEEEEECCCCCCCCCCHHHCCHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHCC
IDGSEKESLKILNKEMKNILGKHYMGHQIVSTQMAFYGLASALLPESDFYKNKQKFLDFF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
KAEEWLLYKSRFQQLGEFITEALLENSRKKIIESNCNKALKAKITRSDQNHD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCC
>Mature Secondary Structure
MRAKMKNIYLDVKASIENLQNIFKNTDNENERLKKSNQEALEVFQKLEFESLKELESLKN
CCCCHHHHEEHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCHHHHHHHHHHCC
NEEWENFTIAFYGETGAGKSTLIECLRMFFKEQSKVDQQKRFKRLYSTYQKNYQNDERNK
CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
QAILNELHSLQDGAIIGDGRSDFTLKTQSYSFQYNHQTFTLLDVPGIEGSEKKVIQQISN
HHHHHHHHHHCCCCEEECCCCCEEEEECCEEEEECCCEEEEEECCCCCCHHHHHHHHHHH
ATQKAHAIFYVTKTPNPPQKGEERKEGTIEKIQRQLGLQTEVWTIFNKPINNPRAFKDGL
HHHHHEEEEEEECCCCCCCCCCHHHCCHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHCC
IDGSEKESLKILNKEMKNILGKHYMGHQIVSTQMAFYGLASALLPESDFYKNKQKFLDFF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
KAEEWLLYKSRFQQLGEFITEALLENSRKKIIESNCNKALKAKITRSDQNHD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA