| Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
|---|---|
| Accession | NC_008086 |
| Length | 1,596,366 |
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The map label for this gene is 108563119
Identifier: 108563119
GI number: 108563119
Start: 730184
End: 731086
Strand: Direct
Name: 108563119
Synonym: HPAG1_0694
Alternate gene names: NA
Gene position: 730184-731086 (Clockwise)
Preceding gene: 108563118
Following gene: 108563120
Centisome position: 45.74
GC content: 43.08
Gene sequence:
>903_bases ATGAAAAAAACGATTTCAGCGTTGTTTTTATCAGCGTGCATAGGGTTATCGTCTGTTTATGCAGATAACGCTTTGATTTT ACAAACCGACTTTAGCCTAAAAGATGGGGCTGTCTCGGCGATGAAAGGCGTCGCTTTCAGCGTTGATTCCAATCTTAAAA TCTTTGATTTAACGCACGAAATCCCCCCATATAACATCTGGGAAGGCGCTTACCGCTTGTATCAGACCGCTAGTTATTGG CCAAAAGGTTCGGTATTTGTGAGCGTAGTGGATCCGGGCGTAGGCACTAATCGTAAATCGGTGGTACTAAAAACTAAAAA CGGCCAGTATTTTGTTTCGCCGGATAACGGCACGCTGACTTTGGTAGCACAAACTTTGGGGATTGATAGCGTGCGTGAAA TTGATGAAAAAGCTAACCGCTTGAAAGGTTCTGAAAAATCCTATACTTTCCATGGTCGTGATGTGTATGCTTACACTGGG GCGCGCTTGGCTTCTGGGGCGATCACATTCGAGCAGGTCGGGCCAGAGCTTCCCACAAAAGTTGTTGAAATCCCTTATCA AAAAGCGAAAGCCACAAAAGGGGAAGTGAAAGGTAATATCCCGATTTTGGATATTCAATATGGCAATGTTTGGAGCAATA TCAGCGATAAATTACTCAATCAAGCAAAAATCAAACTCAATGACACACTGTGTGTAACGATTTCTAAAGGCTCCAAGAAA CAATACGAAGGGAAAATGCCGTATGTTGCGAGCTTTGGCAATGTGCCAGAAAGCCAGCCGTTGGTCTATCTAAACAGCTT GTTGAACGTTTCTGTGGCGCTGAATAGGGATAATTTCGCGCAAAAACATCAAATCAAATCCGGTGCTGACTGGAATATTG ATATAAAGAAGTGTGCTAAGTAA
Upstream 100 bases:
>100_bases AAATGTAAAGCCCTTTTAAACCCTTAATGTTTAGAAAAAACCCCCTTAAATGGTATAATAAAGGGGTTAAAAGCCCATAA AAGTTAATCAAGGAGTAACC
Downstream 100 bases:
>100_bases AGCGTTGTTTAGAAAAATTAAGGGGGGGTCAAATTTTCCCTACCAAACTTTCATTAACACAGCCCAATTAATGATAAATA AACTATAAAACAAACGCTTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 300; Mature: 300
Protein sequence:
>300_residues MKKTISALFLSACIGLSSVYADNALILQTDFSLKDGAVSAMKGVAFSVDSNLKIFDLTHEIPPYNIWEGAYRLYQTASYW PKGSVFVSVVDPGVGTNRKSVVLKTKNGQYFVSPDNGTLTLVAQTLGIDSVREIDEKANRLKGSEKSYTFHGRDVYAYTG ARLASGAITFEQVGPELPTKVVEIPYQKAKATKGEVKGNIPILDIQYGNVWSNISDKLLNQAKIKLNDTLCVTISKGSKK QYEGKMPYVASFGNVPESQPLVYLNSLLNVSVALNRDNFAQKHQIKSGADWNIDIKKCAK
Sequences:
>Translated_300_residues MKKTISALFLSACIGLSSVYADNALILQTDFSLKDGAVSAMKGVAFSVDSNLKIFDLTHEIPPYNIWEGAYRLYQTASYW PKGSVFVSVVDPGVGTNRKSVVLKTKNGQYFVSPDNGTLTLVAQTLGIDSVREIDEKANRLKGSEKSYTFHGRDVYAYTG ARLASGAITFEQVGPELPTKVVEIPYQKAKATKGEVKGNIPILDIQYGNVWSNISDKLLNQAKIKLNDTLCVTISKGSKK QYEGKMPYVASFGNVPESQPLVYLNSLLNVSVALNRDNFAQKHQIKSGADWNIDIKKCAK >Mature_300_residues MKKTISALFLSACIGLSSVYADNALILQTDFSLKDGAVSAMKGVAFSVDSNLKIFDLTHEIPPYNIWEGAYRLYQTASYW PKGSVFVSVVDPGVGTNRKSVVLKTKNGQYFVSPDNGTLTLVAQTLGIDSVREIDEKANRLKGSEKSYTFHGRDVYAYTG ARLASGAITFEQVGPELPTKVVEIPYQKAKATKGEVKGNIPILDIQYGNVWSNISDKLLNQAKIKLNDTLCVTISKGSKK QYEGKMPYVASFGNVPESQPLVYLNSLLNVSVALNRDNFAQKHQIKSGADWNIDIKKCAK
Specific function: Unknown
COG id: COG1912
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002747 - InterPro: IPR023227 - InterPro: IPR023228 [H]
Pfam domain/function: PF01887 DUF62 [H]
EC number: NA
Molecular weight: Translated: 32904; Mature: 32904
Theoretical pI: Translated: 9.62; Mature: 9.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKTISALFLSACIGLSSVYADNALILQTDFSLKDGAVSAMKGVAFSVDSNLKIFDLTHE CCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHCCEEEEECCCCEEEEEECC IPPYNIWEGAYRLYQTASYWPKGSVFVSVVDPGVGTNRKSVVLKTKNGQYFVSPDNGTLT CCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEEECCCEEEECCCCCEEE LVAQTLGIDSVREIDEKANRLKGSEKSYTFHGRDVYAYTGARLASGAITFEQVGPELPTK EEEECCCCHHHHHHHHHHHHCCCCCCCEEEECCEEEEECCCCHHCCCEEHHHCCCCCCCC VVEIPYQKAKATKGEVKGNIPILDIQYGNVWSNISDKLLNQAKIKLNDTLCVTISKGSKK EEECCCHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCEEEEECCEEEEEEECCCCC QYEGKMPYVASFGNVPESQPLVYLNSLLNVSVALNRDNFAQKHQIKSGADWNIDIKKCAK CCCCCCCEEEECCCCCCCCCEEEEEHHEEEEEEECCCCCHHHHHCCCCCCCCEEHHHHCC >Mature Secondary Structure MKKTISALFLSACIGLSSVYADNALILQTDFSLKDGAVSAMKGVAFSVDSNLKIFDLTHE CCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHCCEEEEECCCCEEEEEECC IPPYNIWEGAYRLYQTASYWPKGSVFVSVVDPGVGTNRKSVVLKTKNGQYFVSPDNGTLT CCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEEECCCEEEECCCCCEEE LVAQTLGIDSVREIDEKANRLKGSEKSYTFHGRDVYAYTGARLASGAITFEQVGPELPTK EEEECCCCHHHHHHHHHHHHCCCCCCCEEEECCEEEEECCCCHHCCCEEHHHCCCCCCCC VVEIPYQKAKATKGEVKGNIPILDIQYGNVWSNISDKLLNQAKIKLNDTLCVTISKGSKK EEECCCHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCEEEEECCEEEEEEECCCCC QYEGKMPYVASFGNVPESQPLVYLNSLLNVSVALNRDNFAQKHQIKSGADWNIDIKKCAK CCCCCCCEEEECCCCCCCCCEEEEEHHEEEEEEECCCCCHHHHHCCCCCCCCEEHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]