Definition Helicobacter pylori HPAG1 chromosome, complete genome.
Accession NC_008086
Length 1,596,366

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The map label for this gene is 108563119

Identifier: 108563119

GI number: 108563119

Start: 730184

End: 731086

Strand: Direct

Name: 108563119

Synonym: HPAG1_0694

Alternate gene names: NA

Gene position: 730184-731086 (Clockwise)

Preceding gene: 108563118

Following gene: 108563120

Centisome position: 45.74

GC content: 43.08

Gene sequence:

>903_bases
ATGAAAAAAACGATTTCAGCGTTGTTTTTATCAGCGTGCATAGGGTTATCGTCTGTTTATGCAGATAACGCTTTGATTTT
ACAAACCGACTTTAGCCTAAAAGATGGGGCTGTCTCGGCGATGAAAGGCGTCGCTTTCAGCGTTGATTCCAATCTTAAAA
TCTTTGATTTAACGCACGAAATCCCCCCATATAACATCTGGGAAGGCGCTTACCGCTTGTATCAGACCGCTAGTTATTGG
CCAAAAGGTTCGGTATTTGTGAGCGTAGTGGATCCGGGCGTAGGCACTAATCGTAAATCGGTGGTACTAAAAACTAAAAA
CGGCCAGTATTTTGTTTCGCCGGATAACGGCACGCTGACTTTGGTAGCACAAACTTTGGGGATTGATAGCGTGCGTGAAA
TTGATGAAAAAGCTAACCGCTTGAAAGGTTCTGAAAAATCCTATACTTTCCATGGTCGTGATGTGTATGCTTACACTGGG
GCGCGCTTGGCTTCTGGGGCGATCACATTCGAGCAGGTCGGGCCAGAGCTTCCCACAAAAGTTGTTGAAATCCCTTATCA
AAAAGCGAAAGCCACAAAAGGGGAAGTGAAAGGTAATATCCCGATTTTGGATATTCAATATGGCAATGTTTGGAGCAATA
TCAGCGATAAATTACTCAATCAAGCAAAAATCAAACTCAATGACACACTGTGTGTAACGATTTCTAAAGGCTCCAAGAAA
CAATACGAAGGGAAAATGCCGTATGTTGCGAGCTTTGGCAATGTGCCAGAAAGCCAGCCGTTGGTCTATCTAAACAGCTT
GTTGAACGTTTCTGTGGCGCTGAATAGGGATAATTTCGCGCAAAAACATCAAATCAAATCCGGTGCTGACTGGAATATTG
ATATAAAGAAGTGTGCTAAGTAA

Upstream 100 bases:

>100_bases
AAATGTAAAGCCCTTTTAAACCCTTAATGTTTAGAAAAAACCCCCTTAAATGGTATAATAAAGGGGTTAAAAGCCCATAA
AAGTTAATCAAGGAGTAACC

Downstream 100 bases:

>100_bases
AGCGTTGTTTAGAAAAATTAAGGGGGGGTCAAATTTTCCCTACCAAACTTTCATTAACACAGCCCAATTAATGATAAATA
AACTATAAAACAAACGCTTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MKKTISALFLSACIGLSSVYADNALILQTDFSLKDGAVSAMKGVAFSVDSNLKIFDLTHEIPPYNIWEGAYRLYQTASYW
PKGSVFVSVVDPGVGTNRKSVVLKTKNGQYFVSPDNGTLTLVAQTLGIDSVREIDEKANRLKGSEKSYTFHGRDVYAYTG
ARLASGAITFEQVGPELPTKVVEIPYQKAKATKGEVKGNIPILDIQYGNVWSNISDKLLNQAKIKLNDTLCVTISKGSKK
QYEGKMPYVASFGNVPESQPLVYLNSLLNVSVALNRDNFAQKHQIKSGADWNIDIKKCAK

Sequences:

>Translated_300_residues
MKKTISALFLSACIGLSSVYADNALILQTDFSLKDGAVSAMKGVAFSVDSNLKIFDLTHEIPPYNIWEGAYRLYQTASYW
PKGSVFVSVVDPGVGTNRKSVVLKTKNGQYFVSPDNGTLTLVAQTLGIDSVREIDEKANRLKGSEKSYTFHGRDVYAYTG
ARLASGAITFEQVGPELPTKVVEIPYQKAKATKGEVKGNIPILDIQYGNVWSNISDKLLNQAKIKLNDTLCVTISKGSKK
QYEGKMPYVASFGNVPESQPLVYLNSLLNVSVALNRDNFAQKHQIKSGADWNIDIKKCAK
>Mature_300_residues
MKKTISALFLSACIGLSSVYADNALILQTDFSLKDGAVSAMKGVAFSVDSNLKIFDLTHEIPPYNIWEGAYRLYQTASYW
PKGSVFVSVVDPGVGTNRKSVVLKTKNGQYFVSPDNGTLTLVAQTLGIDSVREIDEKANRLKGSEKSYTFHGRDVYAYTG
ARLASGAITFEQVGPELPTKVVEIPYQKAKATKGEVKGNIPILDIQYGNVWSNISDKLLNQAKIKLNDTLCVTISKGSKK
QYEGKMPYVASFGNVPESQPLVYLNSLLNVSVALNRDNFAQKHQIKSGADWNIDIKKCAK

Specific function: Unknown

COG id: COG1912

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002747
- InterPro:   IPR023227
- InterPro:   IPR023228 [H]

Pfam domain/function: PF01887 DUF62 [H]

EC number: NA

Molecular weight: Translated: 32904; Mature: 32904

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTISALFLSACIGLSSVYADNALILQTDFSLKDGAVSAMKGVAFSVDSNLKIFDLTHE
CCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHCCEEEEECCCCEEEEEECC
IPPYNIWEGAYRLYQTASYWPKGSVFVSVVDPGVGTNRKSVVLKTKNGQYFVSPDNGTLT
CCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEEECCCEEEECCCCCEEE
LVAQTLGIDSVREIDEKANRLKGSEKSYTFHGRDVYAYTGARLASGAITFEQVGPELPTK
EEEECCCCHHHHHHHHHHHHCCCCCCCEEEECCEEEEECCCCHHCCCEEHHHCCCCCCCC
VVEIPYQKAKATKGEVKGNIPILDIQYGNVWSNISDKLLNQAKIKLNDTLCVTISKGSKK
EEECCCHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCEEEEECCEEEEEEECCCCC
QYEGKMPYVASFGNVPESQPLVYLNSLLNVSVALNRDNFAQKHQIKSGADWNIDIKKCAK
CCCCCCCEEEECCCCCCCCCEEEEEHHEEEEEEECCCCCHHHHHCCCCCCCCEEHHHHCC
>Mature Secondary Structure
MKKTISALFLSACIGLSSVYADNALILQTDFSLKDGAVSAMKGVAFSVDSNLKIFDLTHE
CCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHCCEEEEECCCCEEEEEECC
IPPYNIWEGAYRLYQTASYWPKGSVFVSVVDPGVGTNRKSVVLKTKNGQYFVSPDNGTLT
CCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEEECCCEEEECCCCCEEE
LVAQTLGIDSVREIDEKANRLKGSEKSYTFHGRDVYAYTGARLASGAITFEQVGPELPTK
EEEECCCCHHHHHHHHHHHHCCCCCCCEEEECCEEEEECCCCHHCCCEEHHHCCCCCCCC
VVEIPYQKAKATKGEVKGNIPILDIQYGNVWSNISDKLLNQAKIKLNDTLCVTISKGSKK
EEECCCHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCEEEEECCEEEEEEECCCCC
QYEGKMPYVASFGNVPESQPLVYLNSLLNVSVALNRDNFAQKHQIKSGADWNIDIKKCAK
CCCCCCCEEEECCCCCCCCCEEEEEHHEEEEEEECCCCCHHHHHCCCCCCCCEEHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]