Click here to switch to the map view.

The map label for this gene is 108562943

Identifier: 108562943

GI number: 108562943

Start: 540507

End: 541313

Strand: Reverse

Name: 108562943

Synonym: HPAG1_0518

Alternate gene names: NA

Gene position: 541313-540507 (Counterclockwise)

Preceding gene: 108562944

Following gene: 108562942

Centisome position: 33.91

GC content: 31.35

Gene sequence:

>807_bases
ATGAAACAAAATTTGCGCGAACAAAAATTATTGGAAATTTTAGAAAATGATGTCTTGACGATTTTGGATAGTTTTTCTAA
TTACCTTTTTGAACTGAGAGAAGAATTGGACTTCATAGAAGAAGAAATGGAAGGCGAAATCACCGAACAAAACCTTACCA
CTCTTTATGATTTTTCTAATTTCTTAGAAGACCATGTCAATGTGTTTTATGAGGATGTTTTGAATATAGATGATGTCAAA
ACAGAACACCTTTATTCAGGTCTCATAGATAGTCTTAACGCTAATCTTCACTTTGTCAAGTCATTTCTCAATAATCAGGA
TTTAGACTTCCGCTTTTTTAAAGAAATAAACGATGGGCAAGATCCCCAAAAAACATTATCAAGATTAATTCCTCTTCAAA
GTGGGAAAAATGACGCAAGCTCGTTTAAAGCAAATAATTCTTTTGTCTCATTAGTTTATGTTTATGCTTACTTCATGCTA
GAAACTATCATGCAGTCGTATAGGATTCTCAGATTACTAGAAAAACCTATCAATAACAACATAAGCGAGGATATGCAGAG
CGATATAGAGAATTTTTTTGTTCAAGCAAATTTTTTAGAATACTATGTTCAGAACAAAATATACCCAACCAATCATGCCT
ATGACTTCATGCATTTAATCATGGACTCTATTGTTCCTAATTGGATTCAGGTTGATATGAGCGTTGAAGCTAAAAAGAAA
GAGCTTTTTGAAAAATATTTTCAAAACATTGATGACGTAACAAACAAAATGCTCGATCAAAAAAATCAAAACAAAAATAA
CGATTGA

Upstream 100 bases:

>100_bases
GTATTTGTCAAAGAAATTGACAAGATTATCCAAAACCATAGTATCATAGATAAATATCAGGCCTTGAGGCAAATGTATCA
ACAAATAGAGGAGTATTAAA

Downstream 100 bases:

>100_bases
GTGGCGTTAATGCGCTAGAATAATGCTAAAAATAAGAATAAAGGAGTCAAAAATATGAAAACGAATTTTTATAAAATTAA
ATTACTATTTGCTTGGTGTC

Product: cag pathogenicity island protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MKQNLREQKLLEILENDVLTILDSFSNYLFELREELDFIEEEMEGEITEQNLTTLYDFSNFLEDHVNVFYEDVLNIDDVK
TEHLYSGLIDSLNANLHFVKSFLNNQDLDFRFFKEINDGQDPQKTLSRLIPLQSGKNDASSFKANNSFVSLVYVYAYFML
ETIMQSYRILRLLEKPINNNISEDMQSDIENFFVQANFLEYYVQNKIYPTNHAYDFMHLIMDSIVPNWIQVDMSVEAKKK
ELFEKYFQNIDDVTNKMLDQKNQNKNND

Sequences:

>Translated_268_residues
MKQNLREQKLLEILENDVLTILDSFSNYLFELREELDFIEEEMEGEITEQNLTTLYDFSNFLEDHVNVFYEDVLNIDDVK
TEHLYSGLIDSLNANLHFVKSFLNNQDLDFRFFKEINDGQDPQKTLSRLIPLQSGKNDASSFKANNSFVSLVYVYAYFML
ETIMQSYRILRLLEKPINNNISEDMQSDIENFFVQANFLEYYVQNKIYPTNHAYDFMHLIMDSIVPNWIQVDMSVEAKKK
ELFEKYFQNIDDVTNKMLDQKNQNKNND
>Mature_268_residues
MKQNLREQKLLEILENDVLTILDSFSNYLFELREELDFIEEEMEGEITEQNLTTLYDFSNFLEDHVNVFYEDVLNIDDVK
TEHLYSGLIDSLNANLHFVKSFLNNQDLDFRFFKEINDGQDPQKTLSRLIPLQSGKNDASSFKANNSFVSLVYVYAYFML
ETIMQSYRILRLLEKPINNNISEDMQSDIENFFVQANFLEYYVQNKIYPTNHAYDFMHLIMDSIVPNWIQVDMSVEAKKK
ELFEKYFQNIDDVTNKMLDQKNQNKNND

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31862; Mature: 31862

Theoretical pI: Translated: 4.18; Mature: 4.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQNLREQKLLEILENDVLTILDSFSNYLFELREELDFIEEEMEGEITEQNLTTLYDFSN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
FLEDHVNVFYEDVLNIDDVKTEHLYSGLIDSLNANLHFVKSFLNNQDLDFRFFKEINDGQ
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHCCCCC
DPQKTLSRLIPLQSGKNDASSFKANNSFVSLVYVYAYFMLETIMQSYRILRLLEKPINNN
CHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
ISEDMQSDIENFFVQANFLEYYVQNKIYPTNHAYDFMHLIMDSIVPNWIQVDMSVEAKKK
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCHHHHHH
ELFEKYFQNIDDVTNKMLDQKNQNKNND
HHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKQNLREQKLLEILENDVLTILDSFSNYLFELREELDFIEEEMEGEITEQNLTTLYDFSN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
FLEDHVNVFYEDVLNIDDVKTEHLYSGLIDSLNANLHFVKSFLNNQDLDFRFFKEINDGQ
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHCCCCC
DPQKTLSRLIPLQSGKNDASSFKANNSFVSLVYVYAYFMLETIMQSYRILRLLEKPINNN
CHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
ISEDMQSDIENFFVQANFLEYYVQNKIYPTNHAYDFMHLIMDSIVPNWIQVDMSVEAKKK
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCHHHHHH
ELFEKYFQNIDDVTNKMLDQKNQNKNND
HHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA