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The map label for this gene is 108562680

Identifier: 108562680

GI number: 108562680

Start: 259164

End: 260621

Strand: Direct

Name: 108562680

Synonym: HPAG1_0255

Alternate gene names: NA

Gene position: 259164-260621 (Clockwise)

Preceding gene: 108562677

Following gene: 108562681

Centisome position: 16.23

GC content: 42.11

Gene sequence:

>1458_bases
TTGAAAAACCACTCCTTTAAAAAAACGATCGCTCTTTCCTTGCTAGCGGGCATGTCTTTGTGCAGGGCTGAAGAAGATGG
GGCGTTTTTTGTCATAGATTACCAGACGAGTTTGGCCAGACAGGAATTGAAAAATCCAGGCTTCACCCAAGCGCAAGAAT
TAAAGCAGTTAATCAGAGATGGGGCTGTGAGGTTGCAAACTTCTGCCATTCCCTTATCCTACTACTTGGATATTTTAGGG
AATAAAACAACAGCTCTTTTGCGTGAAAGCCTGAAAAACAATACGCAACCATCACAGCCAAACGCGCAACCACAAAACGG
ACCATCAAACCAAGCCTTAGCCAATTTAGAAGAGTCTCTAGGGATTTTAGGAAAACTATTAGATCTATCCCAACAATACG
CTTCAGAAGGTGTCATTAAGCCTTTGGTGGTGGATGTAGGGAAAGAACAGATCGGTATCACTGATAGCATGCTCTTGGTG
GCTCAAAACATCGTTTTAGCTTTAGGGCAAGTGGATTTGAGCAAAATCCAACAAAACAATAACCAACAGCTATACGAAAA
CATCATGAAAGTCATGCTTTTAGGCGCGGGCGGGACTAATGGAGCGTATAATGGCGTGAGTGTGGGCGATATTGCCACAG
GCATGCAAAATTTTTCTTCGCAAACGGGCTTGATAGGGGCTAATTCTACGGTTAGCGAGCTCAACGCTTTGATTAAGAGC
GGGATTTCTTTGGATCGTGAGACTTTGGGGTTAGGGAGTTTTATTGAAAAAAATATTTGTAGCAGCGCATCGCCTTGTTT
TACTGGGAGTCAGCTTATTTATAGGAAAGGGCTAGATAGAACCATAAACATCATTAATGCGGTATTAGGTCAGTTTGAAT
CTTCGGCTAGTTCTCTTTATAAGATTTCTTATATCCCTAATCTCTTTTCGCTCAAAGATTACCAGTCAGCGAGCATGAAC
GGCTTTGGGGCTAAGATGGGTTATAAACAATTTTTCACCCATAAGAAAAATGTTGGCTTAAGGTATTATGGGTTTTTGGA
TTATGGTTATGCGAATTTTGGCGATACGAATTTAAAAGTGGGAGCGAATCTTGTTACTTATGGGGTAGGAACGGATTTTT
TATACAACGTGTATGAACGCTCTAGAAGGAGGGAAAGGACTACAATCGGTCTTTTCTTTGGCGCTCAAATTGCAGGGCAA
ACTTGGAGCACGAATGTAACGAACTTATTGAGCGGGCAAAGGCCTGATGTCAAGTCCAGTTCGTTCCAATTCTTGTTTGA
TTTGGGCGTGCGCACCAACTTTGCAAAAACCAATTTCAACAAGCACAGGCTAGACCAAGGGATAGAATTTGGGGTGAAAA
TCCCTGTTATCGCTCATAAATATTTTGCAACCCAAGGCTCAAGCGCGAGCTATATGAGGAATTTTAGCTTCTATGTGGGC
TATTCAGTCGGTTTTTAA

Upstream 100 bases:

>100_bases
TTTGAAACACTTAATAGCAAATTAAGAATGATTATCTTAAAATTAGAAAGTTTCTTTTATGGATTAAGTAAAATCACTTA
TCAAAGCAAAAAGGATATTT

Downstream 100 bases:

>100_bases
GGAAGGCTCTTGATGAAAAACACCAATACAAAAGAGATAAAGAATACAAGAATGAAAAAAGGTTATAGTCAATACCACGC
GCTCAAAAAAGGGCTTTTAA

Product: outer membrane protein HopF

Products: NA

Alternate protein names: Outer Membrane Protein HorA; Outer Membrane Protein HopQ; Outer Membrane Protein HopE; Outer Membrane Protein HopZ; Outer Membrane Protein/Porin; Outer Membrane Protein HopW Protein (; Outer Membrane Protein HorC; Outer Membrane Protein HorJ; Outer Membrane Protein SabB/HopO; Outer Membrane Protein HopA; Outer Membrane Protein BabA; Outer Membrane Protein HopD; Outer Membrane Protein Adhesin; Outer Membrane Protein ,Adhesin BabA BabB; Outer Membrane Function; Outer Membrane Protein HorK; Adhesin; Outer Membrane Protein HorF; Outer Membrane Protein HopB; Outer Membrane Protein HopL; Outer Membrane Protein HopC; Outer Membrane Protein,HopV BabB BabA; Outer Membrane Protein HorB; Outer Membrane Protein HopF; Outer Membrane Protein HopG

Number of amino acids: Translated: 485; Mature: 485

Protein sequence:

>485_residues
MKNHSFKKTIALSLLAGMSLCRAEEDGAFFVIDYQTSLARQELKNPGFTQAQELKQLIRDGAVRLQTSAIPLSYYLDILG
NKTTALLRESLKNNTQPSQPNAQPQNGPSNQALANLEESLGILGKLLDLSQQYASEGVIKPLVVDVGKEQIGITDSMLLV
AQNIVLALGQVDLSKIQQNNNQQLYENIMKVMLLGAGGTNGAYNGVSVGDIATGMQNFSSQTGLIGANSTVSELNALIKS
GISLDRETLGLGSFIEKNICSSASPCFTGSQLIYRKGLDRTINIINAVLGQFESSASSLYKISYIPNLFSLKDYQSASMN
GFGAKMGYKQFFTHKKNVGLRYYGFLDYGYANFGDTNLKVGANLVTYGVGTDFLYNVYERSRRRERTTIGLFFGAQIAGQ
TWSTNVTNLLSGQRPDVKSSSFQFLFDLGVRTNFAKTNFNKHRLDQGIEFGVKIPVIAHKYFATQGSSASYMRNFSFYVG
YSVGF

Sequences:

>Translated_485_residues
MKNHSFKKTIALSLLAGMSLCRAEEDGAFFVIDYQTSLARQELKNPGFTQAQELKQLIRDGAVRLQTSAIPLSYYLDILG
NKTTALLRESLKNNTQPSQPNAQPQNGPSNQALANLEESLGILGKLLDLSQQYASEGVIKPLVVDVGKEQIGITDSMLLV
AQNIVLALGQVDLSKIQQNNNQQLYENIMKVMLLGAGGTNGAYNGVSVGDIATGMQNFSSQTGLIGANSTVSELNALIKS
GISLDRETLGLGSFIEKNICSSASPCFTGSQLIYRKGLDRTINIINAVLGQFESSASSLYKISYIPNLFSLKDYQSASMN
GFGAKMGYKQFFTHKKNVGLRYYGFLDYGYANFGDTNLKVGANLVTYGVGTDFLYNVYERSRRRERTTIGLFFGAQIAGQ
TWSTNVTNLLSGQRPDVKSSSFQFLFDLGVRTNFAKTNFNKHRLDQGIEFGVKIPVIAHKYFATQGSSASYMRNFSFYVG
YSVGF
>Mature_485_residues
MKNHSFKKTIALSLLAGMSLCRAEEDGAFFVIDYQTSLARQELKNPGFTQAQELKQLIRDGAVRLQTSAIPLSYYLDILG
NKTTALLRESLKNNTQPSQPNAQPQNGPSNQALANLEESLGILGKLLDLSQQYASEGVIKPLVVDVGKEQIGITDSMLLV
AQNIVLALGQVDLSKIQQNNNQQLYENIMKVMLLGAGGTNGAYNGVSVGDIATGMQNFSSQTGLIGANSTVSELNALIKS
GISLDRETLGLGSFIEKNICSSASPCFTGSQLIYRKGLDRTINIINAVLGQFESSASSLYKISYIPNLFSLKDYQSASMN
GFGAKMGYKQFFTHKKNVGLRYYGFLDYGYANFGDTNLKVGANLVTYGVGTDFLYNVYERSRRRERTTIGLFFGAQIAGQ
TWSTNVTNLLSGQRPDVKSSSFQFLFDLGVRTNFAKTNFNKHRLDQGIEFGVKIPVIAHKYFATQGSSASYMRNFSFYVG
YSVGF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 53153; Mature: 53153

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNHSFKKTIALSLLAGMSLCRAEEDGAFFVIDYQTSLARQELKNPGFTQAQELKQLIRD
CCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHCCCCCCHHHHHHHHHHC
GAVRLQTSAIPLSYYLDILGNKTTALLRESLKNNTQPSQPNAQPQNGPSNQALANLEESL
CCEEEEECCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
GILGKLLDLSQQYASEGVIKPLVVDVGKEQIGITDSMLLVAQNIVLALGQVDLSKIQQNN
HHHHHHHHHHHHHHHCCCCCHHHHHCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
NQQLYENIMKVMLLGAGGTNGAYNGVSVGDIATGMQNFSSQTGLIGANSTVSELNALIKS
CHHHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHC
GISLDRETLGLGSFIEKNICSSASPCFTGSQLIYRKGLDRTINIINAVLGQFESSASSLY
CCCCCHHHHCHHHHHHHHHHCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHEE
KISYIPNLFSLKDYQSASMNGFGAKMGYKQFFTHKKNVGLRYYGFLDYGYANFGDTNLKV
EEEECCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEE
GANLVTYGVGTDFLYNVYERSRRRERTTIGLFFGAQIAGQTWSTNVTNLLSGQRPDVKSS
CCEEEEECCCHHHHHHHHHHHHHHHHCEEEEEECCEECCCCCCCCHHHHHCCCCCCCCCC
SFQFLFDLGVRTNFAKTNFNKHRLDQGIEFGVKIPVIAHKYFATQGSSASYMRNFSFYVG
CHHEEEEECCCCCHHHCCCCHHHHHCCCCCCEECCCEEHHHHHCCCCCHHHHHCEEEEEE
YSVGF
EEECC
>Mature Secondary Structure
MKNHSFKKTIALSLLAGMSLCRAEEDGAFFVIDYQTSLARQELKNPGFTQAQELKQLIRD
CCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHCCCCCCHHHHHHHHHHC
GAVRLQTSAIPLSYYLDILGNKTTALLRESLKNNTQPSQPNAQPQNGPSNQALANLEESL
CCEEEEECCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
GILGKLLDLSQQYASEGVIKPLVVDVGKEQIGITDSMLLVAQNIVLALGQVDLSKIQQNN
HHHHHHHHHHHHHHHCCCCCHHHHHCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
NQQLYENIMKVMLLGAGGTNGAYNGVSVGDIATGMQNFSSQTGLIGANSTVSELNALIKS
CHHHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHC
GISLDRETLGLGSFIEKNICSSASPCFTGSQLIYRKGLDRTINIINAVLGQFESSASSLY
CCCCCHHHHCHHHHHHHHHHCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHEE
KISYIPNLFSLKDYQSASMNGFGAKMGYKQFFTHKKNVGLRYYGFLDYGYANFGDTNLKV
EEEECCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEE
GANLVTYGVGTDFLYNVYERSRRRERTTIGLFFGAQIAGQTWSTNVTNLLSGQRPDVKSS
CCEEEEECCCHHHHHHHHHHHHHHHHCEEEEEECCEECCCCCCCCHHHHHCCCCCCCCCC
SFQFLFDLGVRTNFAKTNFNKHRLDQGIEFGVKIPVIAHKYFATQGSSASYMRNFSFYVG
CHHEEEEECCCCCHHHCCCCHHHHHCCCCCCEECCCEEHHHHHCCCCCHHHHHCEEEEEE
YSVGF
EEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA