Click here to switch to the map view.

The map label for this gene is 108562657

Identifier: 108562657

GI number: 108562657

Start: 236130

End: 237590

Strand: Reverse

Name: 108562657

Synonym: HPAG1_0232

Alternate gene names: NA

Gene position: 237590-236130 (Counterclockwise)

Preceding gene: 108562658

Following gene: 108562655

Centisome position: 14.88

GC content: 41.68

Gene sequence:

>1461_bases
ATGAAAAAAACGATTTTACTTTCTCTTATGGTTTCATCTCTCCTCGCTGAAAATGACGGCGTTTTTATGAGCGTGGGCTA
TCAAATCGGCGAAGCGGTTCAACAAGTGAAAAACACCGGCGAAATCCAAAAAGTCTCCAACGCTTACGAAAATTTGAACA
ATCTTTTAACCCGCTATAACGAACTCAAACAAACGGCCTCTAACACCGATTCAAGCACCGCTCAAGCGATTGACAATCTA
AAAGAGAGCGCTAGCAGATTGAAAACGACCCCTAATAACGCTAATCAAGCCGTGTCTTCAGCGCTCAGCTCTGCGGTGGG
CATGTGGCAAGTAATAGCCTCTAATTTAGCCAATAACTCGCTACCCACTAGTGAATACGACAAAATCAATGCGATTTCTC
AATCGCTCCAAAATACCCTAGAAAATAAAAATACAGCCAACAATAATACCACGATTGATAATGACTACGACCATCTTTTA
ACTCAAGCTAGCACCATTATTAATACCCTTCAAAGCCAATGCCCAGGAATAGACGGAGGCAATGGCAAACCATGGGGCAT
TAATGCAAGCGGGAACGCATGCAATATTTTTGGCAACACCTTTAACGCCATCACTAGCATGATTGATAGCGCTAAAAAAG
CCGCCGCAGAAGCCCGAAGAACTAGCCCAGAAAGTCCAAACCAACAAAGCGCGTTTACCAACGCTGATTTCAATAAAAAC
CTCAATCAAGTCTCAGGCGTTATTAATGACACGATCTCTTACCTCAAAGGGGACAATTTAGCAACCATCTATAACACCCT
TCAAAAAACGCCCGGTTCCAAAGGGTTTCAAAGTTTGGTGAGCCGATCTAGCTATAGTTATTCTCTCAACGAAACCCAAT
ATTCTGAATTCCAAACTACCACCAAAGAGTTTGGCCATAACCCTTTTAGAAGCGTGGGTTTAATTAATTCTCAAAGCAAT
AACGGAGCGATGAATGGCGTGGGCGTGCAATTAGGCTATAAGCAATTCTTTGGGAAAAATAAATTTTTTGGGATCCGGTA
TTATGGCTTTTTTGATTACAACTATGCGTATATCAAATCCAACTTTTTTAACTCCGCTTCCAATGTTTTCACCTATGGCG
CCGGCAGTGATCTTTTATTGAATTTCATCAATGGCGGATCCGATAAAAACCGCAAAATCTCTTTTGGCATTTTTGGAGGC
ATCGCTCTAGCCGGCACGACATGGCTTAATAACCAATCTGCGAATTTAAAAATCACCAATAGCGCCTACAGCGCCAAAAT
CAACAACACCAATTTCCAATTTTTATTCAACACCGGCTTAAGGCTTCAAGGGATTCACCATGGCGTTGAATTAGGCGTGA
AAATCCCCACCATCAACACGAATTACTATTCTTTCATGGGCGCCAAATTAGCATACCGAAGACTTTATAGCGTGTATTTC
AATTATGTTTTGGCCTATTGA

Upstream 100 bases:

>100_bases
TAAAAATTCAATAAATTTATGGAATACTTTAAACGCATTGTAAATAAAGTTTCAATTTGATACGATTTTACAAATAAAAC
ATTACTTTAAGGAACATTTT

Downstream 100 bases:

>100_bases
TATTGAATCGGTTCTCATTACTAATGAGGACAAAGCCAACTTTTTGGCTCTCAATGAATAACGGCATCATTTTACTTGAC
TTTTTACAAAAAACACACTA

Product: outer membrane protein HopA

Products: NA

Alternate protein names: Outer Membrane Protein HorA; Outer Membrane Protein HopQ; Outer Membrane Protein HopE; Outer Membrane Protein HopZ; Outer Membrane Protein HorE; Outer Membrane Protein(Omp4) HopW Protein SabB; Outer Membrane Protein/Porin; Outer Membrane Protein HopW Protein (; Outer Membrane Protein HorC; Outer Membrane Protein HorJ; Outer Membrane Protein SabB/HopO; Outer Membrane Protein,HopV SabB SabA; Outer Membrane Protein HopA; Outer Membrane Protein BabA; Outer Membrane Protein HopD; Outer Membrane Protein Adhesin; Outer Membrane Protein ,Adhesin BabA BabB; Outer Membrane Function; Outer Membrane Protein HorK; Outer Membrane Protein HorF; Outer Membrane Protein HopB; Adhesin; Outer Membrane Protein HorL; Outer Membrane Protein HopL; Outer Membrane Protein HopC; Outer Membrane Protein,HopV BabB BabA; Outer Membrane Protein HorB; Outer Membrane Protein HopF; Outer Membrane Protein HopG

Number of amino acids: Translated: 486; Mature: 486

Protein sequence:

>486_residues
MKKTILLSLMVSSLLAENDGVFMSVGYQIGEAVQQVKNTGEIQKVSNAYENLNNLLTRYNELKQTASNTDSSTAQAIDNL
KESASRLKTTPNNANQAVSSALSSAVGMWQVIASNLANNSLPTSEYDKINAISQSLQNTLENKNTANNNTTIDNDYDHLL
TQASTIINTLQSQCPGIDGGNGKPWGINASGNACNIFGNTFNAITSMIDSAKKAAAEARRTSPESPNQQSAFTNADFNKN
LNQVSGVINDTISYLKGDNLATIYNTLQKTPGSKGFQSLVSRSSYSYSLNETQYSEFQTTTKEFGHNPFRSVGLINSQSN
NGAMNGVGVQLGYKQFFGKNKFFGIRYYGFFDYNYAYIKSNFFNSASNVFTYGAGSDLLLNFINGGSDKNRKISFGIFGG
IALAGTTWLNNQSANLKITNSAYSAKINNTNFQFLFNTGLRLQGIHHGVELGVKIPTINTNYYSFMGAKLAYRRLYSVYF
NYVLAY

Sequences:

>Translated_486_residues
MKKTILLSLMVSSLLAENDGVFMSVGYQIGEAVQQVKNTGEIQKVSNAYENLNNLLTRYNELKQTASNTDSSTAQAIDNL
KESASRLKTTPNNANQAVSSALSSAVGMWQVIASNLANNSLPTSEYDKINAISQSLQNTLENKNTANNNTTIDNDYDHLL
TQASTIINTLQSQCPGIDGGNGKPWGINASGNACNIFGNTFNAITSMIDSAKKAAAEARRTSPESPNQQSAFTNADFNKN
LNQVSGVINDTISYLKGDNLATIYNTLQKTPGSKGFQSLVSRSSYSYSLNETQYSEFQTTTKEFGHNPFRSVGLINSQSN
NGAMNGVGVQLGYKQFFGKNKFFGIRYYGFFDYNYAYIKSNFFNSASNVFTYGAGSDLLLNFINGGSDKNRKISFGIFGG
IALAGTTWLNNQSANLKITNSAYSAKINNTNFQFLFNTGLRLQGIHHGVELGVKIPTINTNYYSFMGAKLAYRRLYSVYF
NYVLAY
>Mature_486_residues
MKKTILLSLMVSSLLAENDGVFMSVGYQIGEAVQQVKNTGEIQKVSNAYENLNNLLTRYNELKQTASNTDSSTAQAIDNL
KESASRLKTTPNNANQAVSSALSSAVGMWQVIASNLANNSLPTSEYDKINAISQSLQNTLENKNTANNNTTIDNDYDHLL
TQASTIINTLQSQCPGIDGGNGKPWGINASGNACNIFGNTFNAITSMIDSAKKAAAEARRTSPESPNQQSAFTNADFNKN
LNQVSGVINDTISYLKGDNLATIYNTLQKTPGSKGFQSLVSRSSYSYSLNETQYSEFQTTTKEFGHNPFRSVGLINSQSN
NGAMNGVGVQLGYKQFFGKNKFFGIRYYGFFDYNYAYIKSNFFNSASNVFTYGAGSDLLLNFINGGSDKNRKISFGIFGG
IALAGTTWLNNQSANLKITNSAYSAKINNTNFQFLFNTGLRLQGIHHGVELGVKIPTINTNYYSFMGAKLAYRRLYSVYF
NYVLAY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 53188; Mature: 53188

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTILLSLMVSSLLAENDGVFMSVGYQIGEAVQQVKNTGEIQKVSNAYENLNNLLTRYN
CCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
ELKQTASNTDSSTAQAIDNLKESASRLKTTPNNANQAVSSALSSAVGMWQVIASNLANNS
HHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
LPTSEYDKINAISQSLQNTLENKNTANNNTTIDNDYDHLLTQASTIINTLQSQCPGIDGG
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
NGKPWGINASGNACNIFGNTFNAITSMIDSAKKAAAEARRTSPESPNQQSAFTNADFNKN
CCCCCEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
LNQVSGVINDTISYLKGDNLATIYNTLQKTPGSKGFQSLVSRSSYSYSLNETQYSEFQTT
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCEECCCHHHHHHHHH
TKEFGHNPFRSVGLINSQSNNGAMNGVGVQLGYKQFFGKNKFFGIRYYGFFDYNYAYIKS
HHHHCCCCHHHCCCEECCCCCCCCCCEEEEECHHHHCCCCCEEEEEEEEEEECCEEEEEH
NFFNSASNVFTYGAGSDLLLNFINGGSDKNRKISFGIFGGIALAGTTWLNNQSANLKITN
HHHCCCCCEEEECCCHHHHHHHHCCCCCCCCEEEEEEECCHHHHCEEEECCCCCCEEEEC
SAYSAKINNTNFQFLFNTGLRLQGIHHGVELGVKIPTINTNYYSFMGAKLAYRRLYSVYF
CCEEEEECCCCEEEEEECCCEEEEECCCEEECEEECEECCCHHHHHHHHHHHHHHHHHHH
NYVLAY
HHHHCC
>Mature Secondary Structure
MKKTILLSLMVSSLLAENDGVFMSVGYQIGEAVQQVKNTGEIQKVSNAYENLNNLLTRYN
CCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
ELKQTASNTDSSTAQAIDNLKESASRLKTTPNNANQAVSSALSSAVGMWQVIASNLANNS
HHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
LPTSEYDKINAISQSLQNTLENKNTANNNTTIDNDYDHLLTQASTIINTLQSQCPGIDGG
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
NGKPWGINASGNACNIFGNTFNAITSMIDSAKKAAAEARRTSPESPNQQSAFTNADFNKN
CCCCCEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
LNQVSGVINDTISYLKGDNLATIYNTLQKTPGSKGFQSLVSRSSYSYSLNETQYSEFQTT
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCEECCCHHHHHHHHH
TKEFGHNPFRSVGLINSQSNNGAMNGVGVQLGYKQFFGKNKFFGIRYYGFFDYNYAYIKS
HHHHCCCCHHHCCCEECCCCCCCCCCEEEEECHHHHCCCCCEEEEEEEEEEECCEEEEEH
NFFNSASNVFTYGAGSDLLLNFINGGSDKNRKISFGIFGGIALAGTTWLNNQSANLKITN
HHHCCCCCEEEECCCHHHHHHHHCCCCCCCCEEEEEEECCHHHHCEEEECCCCCCEEEEC
SAYSAKINNTNFQFLFNTGLRLQGIHHGVELGVKIPTINTNYYSFMGAKLAYRRLYSVYF
CCEEEEECCCCEEEEEECCCEEEEECCCEEECEEECEECCCHHHHHHHHHHHHHHHHHHH
NYVLAY
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA