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The map label for this gene is 108562627

Identifier: 108562627

GI number: 108562627

Start: 207215

End: 207847

Strand: Reverse

Name: 108562627

Synonym: HPAG1_0202

Alternate gene names: NA

Gene position: 207847-207215 (Counterclockwise)

Preceding gene: 108562628

Following gene: 108562626

Centisome position: 13.02

GC content: 33.97

Gene sequence:

>633_bases
ATGAAATCTAAAGAAGTCTTAAAGATCTTAAAAATATCCCGTGTTACTCTTTGGAAGTATGTTAAAAGTGGAAAGATACG
AGTTAAACAAGAACCCAATGGTTACTATATATACAACGATTCTGATGTCTATTCTTTAGCAGGAATTGAAGATGGTAGGC
TGAATGTAGTTTATGCTAGGGTAAGCACTCAAAAGCAGAAACAAGACTTGCAAAATCAAATAGAAAACTGTATCTCTTTT
ATAAATGCTAAAGGAATATCTGTAGATAGTATCTATTCTGATATTAAAAGCGGCATGTCTTTGGACAGAAAGGGTTTTAT
GGAACTTCTTAATGCGGTAATGGCGTTTAAAATTAAGGCGGTTTATATTTCCTATAAAGACCGATTAGCTAGATTGAGCT
ATGAGTTAGTAGAAAAGCTATTTAGCGATTATGGCACTAAAATCGTTATTATCAATCAGTGTGAATCAATCAGTTTAGAG
CAAGAACTGTTTGAGGACATCATGCAAACAATCCATTCTTTTTCTATGAAGATGTATTCTAAGCACCGCATTGCTAAAAA
GTTGCTTTTAGAGAGTAAGGTTAATCCAGCCTTGCTAAAATCTCTTAATGGGGGAACAGATGACCTTGACTGA

Upstream 100 bases:

>100_bases
GAATTTATGTGAAAGATAAAATCAGGCAGGTTTTGCCTTTTCATTCTGGCGAAATCTTGCACCCTAAAATAGTGAAAGAA
ATCATGGAAAATATCCTTAA

Downstream 100 bases:

>100_bases
ACGTCATATTATTAGACCCACGCACCCCATTTTTAAACGCATTAAGGACTTTTGCCATCTGTCTAAAAACCTTTACAACT
ACGCTAATTTTATTTTAAGA

Product: putative transposase OrfA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 210

Protein sequence:

>210_residues
MKSKEVLKILKISRVTLWKYVKSGKIRVKQEPNGYYIYNDSDVYSLAGIEDGRLNVVYARVSTQKQKQDLQNQIENCISF
INAKGISVDSIYSDIKSGMSLDRKGFMELLNAVMAFKIKAVYISYKDRLARLSYELVEKLFSDYGTKIVIINQCESISLE
QELFEDIMQTIHSFSMKMYSKHRIAKKLLLESKVNPALLKSLNGGTDDLD

Sequences:

>Translated_210_residues
MKSKEVLKILKISRVTLWKYVKSGKIRVKQEPNGYYIYNDSDVYSLAGIEDGRLNVVYARVSTQKQKQDLQNQIENCISF
INAKGISVDSIYSDIKSGMSLDRKGFMELLNAVMAFKIKAVYISYKDRLARLSYELVEKLFSDYGTKIVIINQCESISLE
QELFEDIMQTIHSFSMKMYSKHRIAKKLLLESKVNPALLKSLNGGTDDLD
>Mature_210_residues
MKSKEVLKILKISRVTLWKYVKSGKIRVKQEPNGYYIYNDSDVYSLAGIEDGRLNVVYARVSTQKQKQDLQNQIENCISF
INAKGISVDSIYSDIKSGMSLDRKGFMELLNAVMAFKIKAVYISYKDRLARLSYELVEKLFSDYGTKIVIINQCESISLE
QELFEDIMQTIHSFSMKMYSKHRIAKKLLLESKVNPALLKSLNGGTDDLD

Specific function: Unknown

COG id: COG2452

COG function: function code L; Predicted site-specific integrase-resolvase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551
- InterPro:   IPR006119
- InterPro:   IPR010093 [H]

Pfam domain/function: PF00376 MerR; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 24076; Mature: 24076

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: PS00397 RECOMBINASES_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSKEVLKILKISRVTLWKYVKSGKIRVKQEPNGYYIYNDSDVYSLAGIEDGRLNVVYAR
CCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCEEEECCCCCCCEEEEEEE
VSTQKQKQDLQNQIENCISFINAKGISVDSIYSDIKSGMSLDRKGFMELLNAVMAFKIKA
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
VYISYKDRLARLSYELVEKLFSDYGTKIVIINQCESISLEQELFEDIMQTIHSFSMKMYS
EEEEHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
KHRIAKKLLLESKVNPALLKSLNGGTDDLD
HHHHHHHHHHHCCCCHHHHHHCCCCCCCCC
>Mature Secondary Structure
MKSKEVLKILKISRVTLWKYVKSGKIRVKQEPNGYYIYNDSDVYSLAGIEDGRLNVVYAR
CCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCEEEECCCCCCCEEEEEEE
VSTQKQKQDLQNQIENCISFINAKGISVDSIYSDIKSGMSLDRKGFMELLNAVMAFKIKA
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
VYISYKDRLARLSYELVEKLFSDYGTKIVIINQCESISLEQELFEDIMQTIHSFSMKMYS
EEEEHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
KHRIAKKLLLESKVNPALLKSLNGGTDDLD
HHHHHHHHHHHCCCCHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]