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The map label for this gene is ymdC [C]

Identifier: 108562609

GI number: 108562609

Start: 189814

End: 191322

Strand: Reverse

Name: ymdC [C]

Synonym: HPAG1_0184

Alternate gene names: 108562609

Gene position: 191322-189814 (Counterclockwise)

Preceding gene: 108562610

Following gene: 108562602

Centisome position: 11.98

GC content: 38.17

Gene sequence:

>1509_bases
TTGAAAATCTTTTTAGTCTTTCTAAGCGTCTTTTTTTTTAATGGGTGCTTTGGGTTAGTCTATAAGACTCCCATTTCAAG
CCCCCTTATCTCTTATGATCCCTACACTACTACCATTGGGAGCTTATACGCTAAAAAATTAAAAGAAAACCCTAACCATA
GCGCGGCCATTCTTTTAGAAGACGGCTTTGACGCTCTGTTGCATAGAGTGGGTCTTATCAGAATGAGCCAAAAAAGCATT
GACATGCAAACTTATATCTATAAGAACGATCTTTCCTCTCAAGTGATCGCTAAAGAACTTTTAAATGCGGCCAATCGTGG
GGTAAAAGTGCGCATCCTTTTAGACGATAACGGAGTGTATTCGGATTTTTCAGATATTATGCTTTTAAATTTCCATAAAA
ACATTGAAGTGAAAATTTTTAACCCCTACTATATCCGCAATAAAGGCTTGCGTTATTTTGAAATGCTTGCGGATTATGAG
CGCATTAAAAAACGCATGCACAACAAGCTTTTCATCGTGGATAATTTCGCTGTCATTATAGGGGGGCGCAATATTGGGGA
TAATTATTTTGATAACGATTTAGACACGAATTTTTTAGATTTAGACGCTTTGTTTTTTGGGGGGGTTGCTTCAAAGGCCA
AAGAAAGCTTTGAACGCTATTGGAGGTTCCACCGCTCTATCCCTGTTTCATTACTAAAAACCCATAAAAGACTCAAAAAC
AACGCTAAAGAAATCGCTAAACTCCATGAAAAAATCCCTATCAGTGCTGAAGACAAAAACCAGTTTGAAAAAAAAGTCAA
TGATTTTATAGATCGTTTCCAAAAATACCAATACCCCATTTATTATGGGAATGCCATTTTTTTAGCTGATTCGCCCAAAA
AAATTGACACGCCCTTGTATTCGCCTATCAAAATCGCTTTTGAGAAAGCCCTTAAAAACGCTAAGGACTCCGTTTTTATC
GCTTCATCGTATTTTATTCCAGGCAAAAAGATGATGAAAATCTTTAAAAATCAAATTTCTAAGGGGATTGAATTGAATAT
TCTTACCAATTCCCTTTCATCTACTGATGCGATAGTGGTCTATGGGGCGTGGGAAAGGTATCGCAACCAATTAGTGCGAA
TGGGCGCGAATGTCTATGAAATACGAAACGATTTTTTCAACCGCCAGATTAAAGGGTGCTTTAGCACCAAACATTCCTTG
CACGGCAAGACGATTGTTTTTGATGACAATTTAACGCTTCTAGGGAGTTTTAATATTGATCCGCGCTCTGCATACATCAA
CACTGAAAGTGCGGTTTTGTTTGACAACCCGTCTTTTGCTAAAAGGGTGCGTTTGTCGCTTAAAGATCATGCCCAACAAT
CATGGCATTTGGTGGTGTATCGGCATAGAGTGATTTGGGAAGCAGTAGAAGAAGGCATTTTAATCCATGAAAAAACTTCG
CCTGATGCGTCCTTCTTTTTACGCTTGATTAAAGAATGGTCTAAAGTCCTTCCTGAAAGAGAGCTTTAA

Upstream 100 bases:

>100_bases
TTGCCCTAAAGAATTACCCTTGCAAAGCAGTATCGCCACTTTGCGCAACCGAATGTTGAAAGTGGGTAAAAGCCGCTAAT
TTCTTTTTAGTGGGTCGTTT

Downstream 100 bases:

>100_bases
AACTTTTAATGCCCTTTATTTTGCGAAAAAGCGATGTTATTGGTAACGGCGGCTAAAAGCGCTGAACACACAAACACCAA
ATGGATCACCACTTGCCAAA

Product: phospholipase D-family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 502; Mature: 502

Protein sequence:

>502_residues
MKIFLVFLSVFFFNGCFGLVYKTPISSPLISYDPYTTTIGSLYAKKLKENPNHSAAILLEDGFDALLHRVGLIRMSQKSI
DMQTYIYKNDLSSQVIAKELLNAANRGVKVRILLDDNGVYSDFSDIMLLNFHKNIEVKIFNPYYIRNKGLRYFEMLADYE
RIKKRMHNKLFIVDNFAVIIGGRNIGDNYFDNDLDTNFLDLDALFFGGVASKAKESFERYWRFHRSIPVSLLKTHKRLKN
NAKEIAKLHEKIPISAEDKNQFEKKVNDFIDRFQKYQYPIYYGNAIFLADSPKKIDTPLYSPIKIAFEKALKNAKDSVFI
ASSYFIPGKKMMKIFKNQISKGIELNILTNSLSSTDAIVVYGAWERYRNQLVRMGANVYEIRNDFFNRQIKGCFSTKHSL
HGKTIVFDDNLTLLGSFNIDPRSAYINTESAVLFDNPSFAKRVRLSLKDHAQQSWHLVVYRHRVIWEAVEEGILIHEKTS
PDASFFLRLIKEWSKVLPEREL

Sequences:

>Translated_502_residues
MKIFLVFLSVFFFNGCFGLVYKTPISSPLISYDPYTTTIGSLYAKKLKENPNHSAAILLEDGFDALLHRVGLIRMSQKSI
DMQTYIYKNDLSSQVIAKELLNAANRGVKVRILLDDNGVYSDFSDIMLLNFHKNIEVKIFNPYYIRNKGLRYFEMLADYE
RIKKRMHNKLFIVDNFAVIIGGRNIGDNYFDNDLDTNFLDLDALFFGGVASKAKESFERYWRFHRSIPVSLLKTHKRLKN
NAKEIAKLHEKIPISAEDKNQFEKKVNDFIDRFQKYQYPIYYGNAIFLADSPKKIDTPLYSPIKIAFEKALKNAKDSVFI
ASSYFIPGKKMMKIFKNQISKGIELNILTNSLSSTDAIVVYGAWERYRNQLVRMGANVYEIRNDFFNRQIKGCFSTKHSL
HGKTIVFDDNLTLLGSFNIDPRSAYINTESAVLFDNPSFAKRVRLSLKDHAQQSWHLVVYRHRVIWEAVEEGILIHEKTS
PDASFFLRLIKEWSKVLPEREL
>Mature_502_residues
MKIFLVFLSVFFFNGCFGLVYKTPISSPLISYDPYTTTIGSLYAKKLKENPNHSAAILLEDGFDALLHRVGLIRMSQKSI
DMQTYIYKNDLSSQVIAKELLNAANRGVKVRILLDDNGVYSDFSDIMLLNFHKNIEVKIFNPYYIRNKGLRYFEMLADYE
RIKKRMHNKLFIVDNFAVIIGGRNIGDNYFDNDLDTNFLDLDALFFGGVASKAKESFERYWRFHRSIPVSLLKTHKRLKN
NAKEIAKLHEKIPISAEDKNQFEKKVNDFIDRFQKYQYPIYYGNAIFLADSPKKIDTPLYSPIKIAFEKALKNAKDSVFI
ASSYFIPGKKMMKIFKNQISKGIELNILTNSLSSTDAIVVYGAWERYRNQLVRMGANVYEIRNDFFNRQIKGCFSTKHSL
HGKTIVFDDNLTLLGSFNIDPRSAYINTESAVLFDNPSFAKRVRLSLKDHAQQSWHLVVYRHRVIWEAVEEGILIHEKTS
PDASFFLRLIKEWSKVLPEREL

Specific function: Unknown

COG id: COG1502

COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PLD phosphodiesterase domains [H]

Homologues:

Organism=Escherichia coli, GI87081826, Length=469, Percent_Identity=31.5565031982942, Blast_Score=215, Evalue=4e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001736 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 58240; Mature: 58240

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: PS50035 PLD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIFLVFLSVFFFNGCFGLVYKTPISSPLISYDPYTTTIGSLYAKKLKENPNHSAAILLE
CCHHHHHHHHHHHCCHHEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEE
DGFDALLHRVGLIRMSQKSIDMQTYIYKNDLSSQVIAKELLNAANRGVKVRILLDDNGVY
CCHHHHHHHHHHHEECCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCC
SDFSDIMLLNFHKNIEVKIFNPYYIRNKGLRYFEMLADYERIKKRMHNKLFIVDNFAVII
CCCCCEEEEEECCCEEEEEECCEEEECCCCHHHHHHHHHHHHHHHHCCEEEEEECEEEEE
GGRNIGDNYFDNDLDTNFLDLDALFFGGVASKAKESFERYWRFHRSIPVSLLKTHKRLKN
ECCCCCCCCCCCCCCCCEEEHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
NAKEIAKLHEKIPISAEDKNQFEKKVNDFIDRFQKYQYPIYYGNAIFLADSPKKIDTPLY
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCEEEEECCCCCCCCCCC
SPIKIAFEKALKNAKDSVFIASSYFIPGKKMMKIFKNQISKGIELNILTNSLSSTDAIVV
CHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEE
YGAWERYRNQLVRMGANVYEIRNDFFNRQIKGCFSTKHSLHGKTIVFDDNLTLLGSFNID
EECHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEEECCCC
PRSAYINTESAVLFDNPSFAKRVRLSLKDHAQQSWHLVVYRHRVIWEAVEEGILIHEKTS
CCCEEECCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHCCEEEEECCC
PDASFFLRLIKEWSKVLPEREL
CCHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKIFLVFLSVFFFNGCFGLVYKTPISSPLISYDPYTTTIGSLYAKKLKENPNHSAAILLE
CCHHHHHHHHHHHCCHHEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEE
DGFDALLHRVGLIRMSQKSIDMQTYIYKNDLSSQVIAKELLNAANRGVKVRILLDDNGVY
CCHHHHHHHHHHHEECCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCC
SDFSDIMLLNFHKNIEVKIFNPYYIRNKGLRYFEMLADYERIKKRMHNKLFIVDNFAVII
CCCCCEEEEEECCCEEEEEECCEEEECCCCHHHHHHHHHHHHHHHHCCEEEEEECEEEEE
GGRNIGDNYFDNDLDTNFLDLDALFFGGVASKAKESFERYWRFHRSIPVSLLKTHKRLKN
ECCCCCCCCCCCCCCCCEEEHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
NAKEIAKLHEKIPISAEDKNQFEKKVNDFIDRFQKYQYPIYYGNAIFLADSPKKIDTPLY
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCEEEEECCCCCCCCCCC
SPIKIAFEKALKNAKDSVFIASSYFIPGKKMMKIFKNQISKGIELNILTNSLSSTDAIVV
CHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEE
YGAWERYRNQLVRMGANVYEIRNDFFNRQIKGCFSTKHSLHGKTIVFDDNLTLLGSFNID
EECHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEEECCCC
PRSAYINTESAVLFDNPSFAKRVRLSLKDHAQQSWHLVVYRHRVIWEAVEEGILIHEKTS
CCCEEECCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHCCEEEEECCC
PDASFFLRLIKEWSKVLPEREL
CCHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]