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The map label for this gene is 108562474

Identifier: 108562474

GI number: 108562474

Start: 52662

End: 53231

Strand: Reverse

Name: 108562474

Synonym: HPAG1_0049

Alternate gene names: NA

Gene position: 53231-52662 (Counterclockwise)

Preceding gene: 108562475

Following gene: 108562473

Centisome position: 3.33

GC content: 32.28

Gene sequence:

>570_bases
ATGGCTTATTTAAAACGGGATAAAAGTGCATTAGAACGCAATCCAAGAACAATCAATCGTATTTGTGGGAGATTGTATGA
AATGGGGCTTAATAAAATTTTTGAAAAATGCAGTGAGCCAAAAGAAACAAACCGCCAAATCGGTCCTATGTTTAAAGATT
GGATCAATAATAAATCTTTAGGTGTTGAGCCTGTAGATTTAAATGATTTTATAGCGAATGAAAACGATGCCATTTTAAGA
GCAAGCGATAATATCATGGCAGAATTTGCCAAATCTCATTTAAATTATCACCATCATAAAGGGCTAGACTTTGTGGCAAG
GTTTAACAAAAAGTATATTATTGGCGAAGCCAAATTTTTAACTGATTTTGGAGGACACCAAAACGCTCAATTTAACGACG
CTATTAGCACAATTGAAACGCCCAACATCAAAGCAATTAAAGTGGCTATTTTAGATGGCGTATTATATATTGAAAGCAAT
AATAAAATGCGTAAATTGCTAGATACTACTTATAGAAACTATAATATTATGAGCGCGTTAGTGTTACGAGAATTTTTATA
TCAAATTTAA

Upstream 100 bases:

>100_bases
AGATTTGGTCTAATATTGAATACCATTTTAAACAAAAAGACAATTTAGCCTTAATAACTGAATTGCTTAATTTAGATTTA
TTCCCTATTAAAGATAGTAT

Downstream 100 bases:

>100_bases
ATGAGAGAAATGCAAAACTTATTAATACAAGCAGAAAATGCAATCGCTCTACTTTTTTTATTGAATGATAAAAACCTAAA
AGGAAAAATAGATTTGATAT

Product: type II restriction enzyme

Products: NA

Alternate protein names: Type II Site-Specific Deoxyribonuclease

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MAYLKRDKSALERNPRTINRICGRLYEMGLNKIFEKCSEPKETNRQIGPMFKDWINNKSLGVEPVDLNDFIANENDAILR
ASDNIMAEFAKSHLNYHHHKGLDFVARFNKKYIIGEAKFLTDFGGHQNAQFNDAISTIETPNIKAIKVAILDGVLYIESN
NKMRKLLDTTYRNYNIMSALVLREFLYQI

Sequences:

>Translated_189_residues
MAYLKRDKSALERNPRTINRICGRLYEMGLNKIFEKCSEPKETNRQIGPMFKDWINNKSLGVEPVDLNDFIANENDAILR
ASDNIMAEFAKSHLNYHHHKGLDFVARFNKKYIIGEAKFLTDFGGHQNAQFNDAISTIETPNIKAIKVAILDGVLYIESN
NKMRKLLDTTYRNYNIMSALVLREFLYQI
>Mature_188_residues
AYLKRDKSALERNPRTINRICGRLYEMGLNKIFEKCSEPKETNRQIGPMFKDWINNKSLGVEPVDLNDFIANENDAILRA
SDNIMAEFAKSHLNYHHHKGLDFVARFNKKYIIGEAKFLTDFGGHQNAQFNDAISTIETPNIKAIKVAILDGVLYIESNN
KMRKLLDTTYRNYNIMSALVLREFLYQI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21879; Mature: 21748

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYLKRDKSALERNPRTINRICGRLYEMGLNKIFEKCSEPKETNRQIGPMFKDWINNKSL
CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCHHHHHHHCCCCC
GVEPVDLNDFIANENDAILRASDNIMAEFAKSHLNYHHHKGLDFVARFNKKYIIGEAKFL
CCCCCCCHHHHCCCCCEEEEECHHHHHHHHHHHCCHHHCCCHHHHHHCCCCEEECCHHHH
TDFGGHQNAQFNDAISTIETPNIKAIKVAILDGVLYIESNNKMRKLLDTTYRNYNIMSAL
HHCCCCCCCCHHHHHHHCCCCCCCEEEEEEECCEEEEECCCHHHHHHHHHHCCHHHHHHH
VLREFLYQI
HHHHHHHHC
>Mature Secondary Structure 
AYLKRDKSALERNPRTINRICGRLYEMGLNKIFEKCSEPKETNRQIGPMFKDWINNKSL
CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCHHHHHHHCCCCC
GVEPVDLNDFIANENDAILRASDNIMAEFAKSHLNYHHHKGLDFVARFNKKYIIGEAKFL
CCCCCCCHHHHCCCCCEEEEECHHHHHHHHHHHCCHHHCCCHHHHHHCCCCEEECCHHHH
TDFGGHQNAQFNDAISTIETPNIKAIKVAILDGVLYIESNNKMRKLLDTTYRNYNIMSAL
HHCCCCCCCCHHHHHHHCCCCCCCEEEEEEECCEEEEECCCHHHHHHHHHHCCHHHHHHH
VLREFLYQI
HHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA