| Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
|---|---|
| Accession | NC_008086 |
| Length | 1,596,366 |
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The map label for this gene is 108562459
Identifier: 108562459
GI number: 108562459
Start: 36615
End: 37613
Strand: Direct
Name: 108562459
Synonym: HPAG1_0034
Alternate gene names: NA
Gene position: 36615-37613 (Clockwise)
Preceding gene: 108562458
Following gene: 108562460
Centisome position: 2.29
GC content: 39.04
Gene sequence:
>999_bases GTGATGCTTCACAAAGCCCTTATCGTTCTATGGTTTTTTTTGAATGGCTTAGGGGCTTATGATTTCAAGCATTGTCAGGC GTTTTTTAAAAAAGCGAGCCTTCAAAAAGGGGGCGTGGCTTTAAAAGAATTGCCTAAGGGCGTGTATTTGTATTATTCCA AAACCTACCCCAAACACGCCAAAGTTATCAAATCCGATCCCTTTGTAGGGTTGTATTTGTTGCAAAGCGCGCCGAGCGAG TATTTTTATACCTTAAGGGATTTAGACAAAGACGCCCTGATAAGGCCAATGGCCAGTATAGGGGATAAAGAAGCCCTAGA AGCGCGGTTGTTTTTCAAGCAAAAAGGGTATGAGCGCTACGCTCAAATTTCACAAAAGATTCAAAAAAATGGCGTTATCA GCAATATTTGCTATCAAATGTTAGGGCTAGGGGTAGGGGGGAATGGCTTTATAGAAACGAAATTTATCAAGCGCTTTTTA AACCAAAAAGAGCCTTATTATGGGGATATTGGGGTGCGTTTAAAAGAAAATAATAAGCGTTTAGTGGTAGCGCAATTTGA TCCCTTTTTCCCTAAAAACCCTTTTTTAAAAAACGATGAAATCCTAGCGATCAATGATTACAAGATCCATTCGTTAGCGG AGTTTGAATGGGTGGTGAGCAATCTTAAATACCAAAGCCTTGCAAAAGTGAAAATCAAACGAAACCACAAAATCAAAGAA GTAACGCTCAAAGTCAATAAGCGTTATGGAGGATTTTTGCTCAAAGACACTTTTTTAGAGCGCTATGGCATCGCTTTAGA CGAGCGTTTTATCATCACTAAAATAGGCAATCATTTGCCCAAAGGCCTAGATTTTTTAAAGCTTGGGGATAGGATTTTAT GGGTGAATCGTAAAAATGTGGCATCCAACCCAAAGGCTTTAAGAGAAGCGTTAAGCGTGCCTAAAATTGAATTATTAGTC TTGCGTAAAGGCTTTGAATTTTACATTAAAGTCCGTTGA
Upstream 100 bases:
>100_bases TGCAAATCTATTTGATGAGCGCTTTGAATGACGGGTATAAAGCCGTAGAAGAAAACCGAAAAAATTTAGCCTTTAACATG TTGGGGAATTTTGCTAAATT
Downstream 100 bases:
>100_bases AGTATTGATGAAAAATGACGCTTATGAAATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCG CTGAATTTTTTCTCTACACT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 332; Mature: 332
Protein sequence:
>332_residues MMLHKALIVLWFFLNGLGAYDFKHCQAFFKKASLQKGGVALKELPKGVYLYYSKTYPKHAKVIKSDPFVGLYLLQSAPSE YFYTLRDLDKDALIRPMASIGDKEALEARLFFKQKGYERYAQISQKIQKNGVISNICYQMLGLGVGGNGFIETKFIKRFL NQKEPYYGDIGVRLKENNKRLVVAQFDPFFPKNPFLKNDEILAINDYKIHSLAEFEWVVSNLKYQSLAKVKIKRNHKIKE VTLKVNKRYGGFLLKDTFLERYGIALDERFIITKIGNHLPKGLDFLKLGDRILWVNRKNVASNPKALREALSVPKIELLV LRKGFEFYIKVR
Sequences:
>Translated_332_residues MMLHKALIVLWFFLNGLGAYDFKHCQAFFKKASLQKGGVALKELPKGVYLYYSKTYPKHAKVIKSDPFVGLYLLQSAPSE YFYTLRDLDKDALIRPMASIGDKEALEARLFFKQKGYERYAQISQKIQKNGVISNICYQMLGLGVGGNGFIETKFIKRFL NQKEPYYGDIGVRLKENNKRLVVAQFDPFFPKNPFLKNDEILAINDYKIHSLAEFEWVVSNLKYQSLAKVKIKRNHKIKE VTLKVNKRYGGFLLKDTFLERYGIALDERFIITKIGNHLPKGLDFLKLGDRILWVNRKNVASNPKALREALSVPKIELLV LRKGFEFYIKVR >Mature_332_residues MMLHKALIVLWFFLNGLGAYDFKHCQAFFKKASLQKGGVALKELPKGVYLYYSKTYPKHAKVIKSDPFVGLYLLQSAPSE YFYTLRDLDKDALIRPMASIGDKEALEARLFFKQKGYERYAQISQKIQKNGVISNICYQMLGLGVGGNGFIETKFIKRFL NQKEPYYGDIGVRLKENNKRLVVAQFDPFFPKNPFLKNDEILAINDYKIHSLAEFEWVVSNLKYQSLAKVKIKRNHKIKE VTLKVNKRYGGFLLKDTFLERYGIALDERFIITKIGNHLPKGLDFLKLGDRILWVNRKNVASNPKALREALSVPKIELLV LRKGFEFYIKVR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38467; Mature: 38467
Theoretical pI: Translated: 10.40; Mature: 10.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMLHKALIVLWFFLNGLGAYDFKHCQAFFKKASLQKGGVALKELPKGVYLYYSKTYPKHA CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCEEEEEECCCCCHH KVIKSDPFVGLYLLQSAPSEYFYTLRDLDKDALIRPMASIGDKEALEARLFFKQKGYERY HEECCCCCEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHH AQISQKIQKNGVISNICYQMLGLGVGGNGFIETKFIKRFLNQKEPYYGDIGVRLKENNKR HHHHHHHHHCCCHHHHHHHHHHCCCCCCCCEEHHHHHHHHCCCCCCCCCEEEEEECCCCE LVVAQFDPFFPKNPFLKNDEILAINDYKIHSLAEFEWVVSNLKYQSLAKVKIKRNHKIKE EEEEECCCCCCCCCCCCCCCEEEEECCEEHHHHHHHHHHHCCCHHHHHHEEECCCCCEEE VTLKVNKRYGGFLLKDTFLERYGIALDERFIITKIGNHLPKGLDFLKLGDRILWVNRKNV EEEEEECCCCCEEHHHHHHHHHCCCCCCEEHEEHHHCCCCCCCHHHHHCCEEEEEECCCC ASNPKALREALSVPKIELLVLRKGFEFYIKVR CCCHHHHHHHHCCCCEEEEEEECCCEEEEEEC >Mature Secondary Structure MMLHKALIVLWFFLNGLGAYDFKHCQAFFKKASLQKGGVALKELPKGVYLYYSKTYPKHA CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCEEEEEECCCCCHH KVIKSDPFVGLYLLQSAPSEYFYTLRDLDKDALIRPMASIGDKEALEARLFFKQKGYERY HEECCCCCEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHH AQISQKIQKNGVISNICYQMLGLGVGGNGFIETKFIKRFLNQKEPYYGDIGVRLKENNKR HHHHHHHHHCCCHHHHHHHHHHCCCCCCCCEEHHHHHHHHCCCCCCCCCEEEEEECCCCE LVVAQFDPFFPKNPFLKNDEILAINDYKIHSLAEFEWVVSNLKYQSLAKVKIKRNHKIKE EEEEECCCCCCCCCCCCCCCEEEEECCEEHHHHHHHHHHHCCCHHHHHHEEECCCCCEEE VTLKVNKRYGGFLLKDTFLERYGIALDERFIITKIGNHLPKGLDFLKLGDRILWVNRKNV EEEEEECCCCCEEHHHHHHHHHCCCCCCEEHEEHHHCCCCCCCHHHHHCCEEEEEECCCC ASNPKALREALSVPKIELLVLRKGFEFYIKVR CCCHHHHHHHHCCCCEEEEEEECCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA