Click here to switch to the map view.

The map label for this gene is nusB [H]

Identifier: 108562426

GI number: 108562426

Start: 1529

End: 1945

Strand: Reverse

Name: nusB [H]

Synonym: HPAG1_0001

Alternate gene names: 108562426

Gene position: 1945-1529 (Counterclockwise)

Preceding gene: 108562427

Following gene: 108562425

Centisome position: 0.12

GC content: 41.49

Gene sequence:

>417_bases
ATGGCGACACGAACTCAAGCCAGGGGGGCTGTGGTTGAATTGTTGTATGCGTTTGAGAGCGGTAATGAAGAAATTAAAAA
AATCGCTTCCAGCATGCTAGAAGAAAAAAAGATTAAAAACAACCAGTTGGCTTTTGCCTTAAGCCTTTTTAATGGCGTGT
TAGAAAGAATCAATGAAATTGACGCCCTCATTGAACCGCATTTAAAAGATTGGGATTTCAAGCGATTAGGGAGCATGGAA
AAGGCGATTTTACGCTTAGGAGCGTATGAAATTGGCTTCACGCCCACGCAAAACCCTATCATCATCAATGAATGCATCGA
GCTTGGCAAACTCTATGCTGAGCCTAACACCCCTAAATTTTTAAACGCCATCTTGGATTCTTTGAGCAAAAAGCTCGCTC
AAAAACCCTTGAATTGA

Upstream 100 bases:

>100_bases
GCGATTGAAAGAGCGGGCAGTAAAGCCGGCAATAAGGGCTTTGAAGCGATGAGCACCCTCATTGAATTATTGAGCTTGTG
CCAAACTCTCAAGGGTTAAA

Downstream 100 bases:

>100_bases
GGGCGTTTTATATTTAATGGTTTTAAAAAATTAAAAAGAGAACATTATTCAAGCAATAACCAAAAAATTGATGCTTTAAA
GCATGAAATCTATAGAACTA

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB [H]

Number of amino acids: Translated: 138; Mature: 137

Protein sequence:

>138_residues
MATRTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKNNQLAFALSLFNGVLERINEIDALIEPHLKDWDFKRLGSME
KAILRLGAYEIGFTPTQNPIIINECIELGKLYAEPNTPKFLNAILDSLSKKLAQKPLN

Sequences:

>Translated_138_residues
MATRTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKNNQLAFALSLFNGVLERINEIDALIEPHLKDWDFKRLGSME
KAILRLGAYEIGFTPTQNPIIINECIELGKLYAEPNTPKFLNAILDSLSKKLAQKPLN
>Mature_137_residues
ATRTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKNNQLAFALSLFNGVLERINEIDALIEPHLKDWDFKRLGSMEK
AILRLGAYEIGFTPTQNPIIINECIELGKLYAEPNTPKFLNAILDSLSKKLAQKPLN

Specific function: Involved in the transcription termination process [H]

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family [H]

Homologues:

Organism=Escherichia coli, GI1786618, Length=116, Percent_Identity=30.1724137931034, Blast_Score=62, Evalue=1e-11,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011605
- InterPro:   IPR006027 [H]

Pfam domain/function: PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 15519; Mature: 15388

Theoretical pI: Translated: 7.36; Mature: 7.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATRTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKNNQLAFALSLFNGVLERINEI
CCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
DALIEPHLKDWDFKRLGSMEKAILRLGAYEIGFTPTQNPIIINECIELGKLYAEPNTPKF
HHHHCCCCCCCCHHHHHHHHHHHHHHCCHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHH
LNAILDSLSKKLAQKPLN
HHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ATRTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKNNQLAFALSLFNGVLERINEI
CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
DALIEPHLKDWDFKRLGSMEKAILRLGAYEIGFTPTQNPIIINECIELGKLYAEPNTPKF
HHHHCCCCCCCCHHHHHHHHHHHHHHCCHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHH
LNAILDSLSKKLAQKPLN
HHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA