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The map label for this gene is yhjC [H]

Identifier: 107023421

GI number: 107023421

Start: 2070519

End: 2071568

Strand: Reverse

Name: yhjC [H]

Synonym: Bcen_1872

Alternate gene names: 107023421

Gene position: 2071568-2070519 (Counterclockwise)

Preceding gene: 107023422

Following gene: 107023419

Centisome position: 62.88

GC content: 71.14

Gene sequence:

>1050_bases
GTGGACAATGGACGGGCGCGCGACCACGAGGCCGCGCGCCCGTTTTCTCTGTGCCGCCGAAGCCGGCCGCGATGCGCGGC
GGCCGGCGGCGACCGTCGTTCGAACCCGGGTTTCCCGCCGATGGACAAGCTGGATCAGGTCAGGATCTTCCTGCAGGTTG
CCGAGATGGGCAGCTTCATCAAGGCCGCGCATGCGCTCGACGTGCCGCGCGCGACCGTGTCGGCGGCCGTCCAGCAGCTC
GAGACGGCGCTCGGCACGCGTCTGTTGCACCGCACGACCCGCCAGGTGCAGCTGACCGCCGACGGCGCGCTGCTGCTCGA
GCGCGGCCGGCGCCTGCTCGCGGAGGCCGACGAACTCGACCGCCTGTTTCGGCGCCGCGACCGTGACGTGGTCGGGCGGC
TGAACGTCGACGTGCCGAGCCGGATCGCGCGCCGCGTCGTGGCGCCCGCGCTGCCGTCGCTGTTTCGCCGCCACCCGAAG
CTGCAACTGTCGCTCGGCTCGACGGACCGCTCGATCGACCTCGTGCAGGAGGGCGTCGATTGCGCGATCCGCGTTGGGCG
GCTCGCGGACAGCAGCCTCGTCGTGCGGCCGCTCGGGCAGTTCACGCTGATCAACTGCGCGAGCCCCGACTATCTGCGCG
AGTGCGGCGTACCCGAGCATCCGGACGCGCTCGCGCACGGGCACTGGGCGATCGGCTATGCGTCGCCGACGACCGGGCGC
GAGCTCGGCTGGGAATACTGCGCGGACGGGCAGCGGCACACGCTGACACTGCCGAGCCGCGTGATCGTCAACAACGCCGA
AACCTATATCGCCGGCTGCATCGCCGGAATGGGCTTGATCCAGATTCCGCGCTTCGACGTCGAGCATCTGCTCGCAAGCG
GCGCGCTCGTCGACGTGATGCCCGGCCACCGCGCCGAGCCGATGGACGTATCGGCCGTGTATCCGCACCGCCGGCATCGC
TCGCGCCGGCTCAACGCGTTCATCGAGTGGTTCGGCGCGTTGATGGCGGATGCGTTGAACGACGCGGGCGCGCGCGGCAG
CGGCGACTGA

Upstream 100 bases:

>100_bases
TGGTGGATCACCGGCCAGACGATCCTGATCAACGGCGGCTATACGACCAAGTAACCGGGGCGCTTGCCGGCCGCGCGGCG
CACCGCACTGGCGCGTTTGC

Downstream 100 bases:

>100_bases
CGGCGGCATCGTGCCGGTATCCAGTGGGCAGGCCTGCTGCTCGCCGGCCGATCGGCTCCGGTGCGAGGCGGCCCGTGCGA
CGAGCGCACAGCGCGTGTTC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 349; Mature: 349

Protein sequence:

>349_residues
MDNGRARDHEAARPFSLCRRSRPRCAAAGGDRRSNPGFPPMDKLDQVRIFLQVAEMGSFIKAAHALDVPRATVSAAVQQL
ETALGTRLLHRTTRQVQLTADGALLLERGRRLLAEADELDRLFRRRDRDVVGRLNVDVPSRIARRVVAPALPSLFRRHPK
LQLSLGSTDRSIDLVQEGVDCAIRVGRLADSSLVVRPLGQFTLINCASPDYLRECGVPEHPDALAHGHWAIGYASPTTGR
ELGWEYCADGQRHTLTLPSRVIVNNAETYIAGCIAGMGLIQIPRFDVEHLLASGALVDVMPGHRAEPMDVSAVYPHRRHR
SRRLNAFIEWFGALMADALNDAGARGSGD

Sequences:

>Translated_349_residues
MDNGRARDHEAARPFSLCRRSRPRCAAAGGDRRSNPGFPPMDKLDQVRIFLQVAEMGSFIKAAHALDVPRATVSAAVQQL
ETALGTRLLHRTTRQVQLTADGALLLERGRRLLAEADELDRLFRRRDRDVVGRLNVDVPSRIARRVVAPALPSLFRRHPK
LQLSLGSTDRSIDLVQEGVDCAIRVGRLADSSLVVRPLGQFTLINCASPDYLRECGVPEHPDALAHGHWAIGYASPTTGR
ELGWEYCADGQRHTLTLPSRVIVNNAETYIAGCIAGMGLIQIPRFDVEHLLASGALVDVMPGHRAEPMDVSAVYPHRRHR
SRRLNAFIEWFGALMADALNDAGARGSGD
>Mature_349_residues
MDNGRARDHEAARPFSLCRRSRPRCAAAGGDRRSNPGFPPMDKLDQVRIFLQVAEMGSFIKAAHALDVPRATVSAAVQQL
ETALGTRLLHRTTRQVQLTADGALLLERGRRLLAEADELDRLFRRRDRDVVGRLNVDVPSRIARRVVAPALPSLFRRHPK
LQLSLGSTDRSIDLVQEGVDCAIRVGRLADSSLVVRPLGQFTLINCASPDYLRECGVPEHPDALAHGHWAIGYASPTTGR
ELGWEYCADGQRHTLTLPSRVIVNNAETYIAGCIAGMGLIQIPRFDVEHLLASGALVDVMPGHRAEPMDVSAVYPHRRHR
SRRLNAFIEWFGALMADALNDAGARGSGD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=300, Percent_Identity=39.6666666666667, Blast_Score=247, Evalue=9e-67,
Organism=Escherichia coli, GI1786401, Length=291, Percent_Identity=33.3333333333333, Blast_Score=141, Evalue=8e-35,
Organism=Escherichia coli, GI1789639, Length=295, Percent_Identity=28.8135593220339, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI87081978, Length=295, Percent_Identity=31.5254237288136, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1789440, Length=291, Percent_Identity=27.8350515463918, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1787589, Length=281, Percent_Identity=27.4021352313167, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI1787128, Length=286, Percent_Identity=25.8741258741259, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1786448, Length=292, Percent_Identity=24.3150684931507, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1786713, Length=323, Percent_Identity=26.625386996904, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1789173, Length=172, Percent_Identity=29.6511627906977, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 38400; Mature: 38400

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNGRARDHEAARPFSLCRRSRPRCAAAGGDRRSNPGFPPMDKLDQVRIFLQVAEMGSFI
CCCCCCCCCCCCCHHHHHHCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
KAAHALDVPRATVSAAVQQLETALGTRLLHRTTRQVQLTADGALLLERGRRLLAEADELD
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHH
RLFRRRDRDVVGRLNVDVPSRIARRVVAPALPSLFRRHPKLQLSLGSTDRSIDLVQEGVD
HHHHHHCCHHHEECCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCHH
CAIRVGRLADSSLVVRPLGQFTLINCASPDYLRECGVPEHPDALAHGHWAIGYASPTTGR
HHHHHCCCCCCCCEEEECCCEEEEECCCHHHHHHCCCCCCCCHHCCCCEEEEECCCCCCH
ELGWEYCADGQRHTLTLPSRVIVNNAETYIAGCIAGMGLIQIPRFDVEHLLASGALVDVM
HCCHHHHCCCCCEEEECCCEEEECCCHHHHHHHHHCCCHHCCCCCCHHHHHHCCCEEECC
PGHRAEPMDVSAVYPHRRHRSRRLNAFIEWFGALMADALNDAGARGSGD
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MDNGRARDHEAARPFSLCRRSRPRCAAAGGDRRSNPGFPPMDKLDQVRIFLQVAEMGSFI
CCCCCCCCCCCCCHHHHHHCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
KAAHALDVPRATVSAAVQQLETALGTRLLHRTTRQVQLTADGALLLERGRRLLAEADELD
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHH
RLFRRRDRDVVGRLNVDVPSRIARRVVAPALPSLFRRHPKLQLSLGSTDRSIDLVQEGVD
HHHHHHCCHHHEECCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCHH
CAIRVGRLADSSLVVRPLGQFTLINCASPDYLRECGVPEHPDALAHGHWAIGYASPTTGR
HHHHHCCCCCCCCEEEECCCEEEEECCCHHHHHHCCCCCCCCHHCCCCEEEEECCCCCCH
ELGWEYCADGQRHTLTLPSRVIVNNAETYIAGCIAGMGLIQIPRFDVEHLLASGALVDVM
HCCHHHHCCCCCEEEECCCEEEECCCHHHHHHHHHCCCHHCCCCCCHHHHHHCCCEEECC
PGHRAEPMDVSAVYPHRRHRSRRLNAFIEWFGALMADALNDAGARGSGD
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]