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The map label for this gene is rfaQ [H]

Identifier: 107022936

GI number: 107022936

Start: 1522197

End: 1523402

Strand: Reverse

Name: rfaQ [H]

Synonym: Bcen_1384

Alternate gene names: 107022936

Gene position: 1523402-1522197 (Counterclockwise)

Preceding gene: 107022937

Following gene: 107022935

Centisome position: 46.24

GC content: 73.38

Gene sequence:

>1206_bases
ATGAGCACGGCCTGGAGCCGCGCCCGCCGCATCCTGTGCGTGCGGCTCGACAGCATCGGCGACGTGCTGATGACCACGCC
CGCGCTGCGCGCGCTGAAGGAGAGCGGCGCCGATCGCCAGCTGACGCTGCTGACGTCGCGCACGGGCGCCGCGCTCGCGA
AGCATCTGCCGATGGTCGACGACGTGTGGAGCTACGACGCGCCGTGGGTCAAGCATCCCGACGTGCGCGGCGATCCGGTG
GCCGATCTCGACATGATCGACCGGCTGCTGGCGGGCCGCTTCGACGCGGCCGTGATCTTCACCGTCTACAGCCAGAATCC
GTTGCCCGCCGCGATGATGTGCTGGCTCGCCGGCATTCCGCTGCGGCTCGCGCATTGCCGCGAGAACCCGTACGAACTGC
TGACCGACCGCGTGCCGGAAACCGAGCCGGAATCGCACGTGCGCCACGAGGTCGCGCGGCAGCTCGCGCTGGTGCGTGCG
ATCGGCGCGAAGACGTCCGACTGGCGGATGGCGTTCGAGCCGGGCGACGCGGCGCGGCGTGCGGTGCACGCGCGCCTGCA
GGCCGCGTTGCAGCGCATCGGCGGCGCGCGTGAGCCGGGAGCGACGCGCGCGCGCTGGCTGGTCGTCCATCCGGGCGCGA
CCGCCGCGTCGCGGCGCTGGCCGGCCGAGCGTTTCGGCGAAGCGGCCGCCGCGGTCGCGCCGCTGTTCGACGGCATCGCG
GTGACGGGCAGCGCGGACGAACGCGCGCTGGTCGACGCGGTGTGCGAACGGGCGGGGCCGCGCGCGGTGCCGCTGGCCGG
CGTGTTGCCGCTCGGCGAACTCGGCGCGCTGGTCGAGACGGCCGACCTGCTGCTGTCGAACAACAGCGGCCCCGTGCATC
TCGCGGCCGCGCTCGGCACGCCGGTGGTCGACCTGTACGCGCTGACCAATCCGCAGCACACGCCGTGGCGGGTGCCGCAC
CGTGTGCTGAACGTCGACGTGCCGTGCCGCAACTGCTATCGCAGCGTGTGCAACCAGCCCGGCCATCCGTGCCTGCGCGG
CGTGAGCGTCGACGACGTCGCCGCCGCCGTGCACGCATTGCTGCGCGGCCGCGCGCGCCATGCGCAACGCGCGGCCGAGT
GGGCTGCCGCCCACGACGAAGGCGAGCCGGTCGCGGCGCACGCATCGAACGTGATTCCGTTCGCGCACGTCATCACGAGG
AACTGA

Upstream 100 bases:

>100_bases
ACGCCGCGCGCACGCCGCACCACGTCGTCGATCGCATCGACCTGGCCGCCGACATCGTGGTGCGCGAAGCCGTGCGCCGG
CACGGCTCGTGGGTGCGGCG

Downstream 100 bases:

>100_bases
CGCATGCCTGAATCGACCTATACGCTCGGCATCAACGCCGCCTTCCACGACAGCGCCGCGTGCATCGTGCGCGACGGCGT
CGTGATCGCGGCGGCCGAGG

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 400

Protein sequence:

>401_residues
MSTAWSRARRILCVRLDSIGDVLMTTPALRALKESGADRQLTLLTSRTGAALAKHLPMVDDVWSYDAPWVKHPDVRGDPV
ADLDMIDRLLAGRFDAAVIFTVYSQNPLPAAMMCWLAGIPLRLAHCRENPYELLTDRVPETEPESHVRHEVARQLALVRA
IGAKTSDWRMAFEPGDAARRAVHARLQAALQRIGGAREPGATRARWLVVHPGATAASRRWPAERFGEAAAAVAPLFDGIA
VTGSADERALVDAVCERAGPRAVPLAGVLPLGELGALVETADLLLSNNSGPVHLAAALGTPVVDLYALTNPQHTPWRVPH
RVLNVDVPCRNCYRSVCNQPGHPCLRGVSVDDVAAAVHALLRGRARHAQRAAEWAAAHDEGEPVAAHASNVIPFAHVITR
N

Sequences:

>Translated_401_residues
MSTAWSRARRILCVRLDSIGDVLMTTPALRALKESGADRQLTLLTSRTGAALAKHLPMVDDVWSYDAPWVKHPDVRGDPV
ADLDMIDRLLAGRFDAAVIFTVYSQNPLPAAMMCWLAGIPLRLAHCRENPYELLTDRVPETEPESHVRHEVARQLALVRA
IGAKTSDWRMAFEPGDAARRAVHARLQAALQRIGGAREPGATRARWLVVHPGATAASRRWPAERFGEAAAAVAPLFDGIA
VTGSADERALVDAVCERAGPRAVPLAGVLPLGELGALVETADLLLSNNSGPVHLAAALGTPVVDLYALTNPQHTPWRVPH
RVLNVDVPCRNCYRSVCNQPGHPCLRGVSVDDVAAAVHALLRGRARHAQRAAEWAAAHDEGEPVAAHASNVIPFAHVITR
N
>Mature_400_residues
STAWSRARRILCVRLDSIGDVLMTTPALRALKESGADRQLTLLTSRTGAALAKHLPMVDDVWSYDAPWVKHPDVRGDPVA
DLDMIDRLLAGRFDAAVIFTVYSQNPLPAAMMCWLAGIPLRLAHCRENPYELLTDRVPETEPESHVRHEVARQLALVRAI
GAKTSDWRMAFEPGDAARRAVHARLQAALQRIGGAREPGATRARWLVVHPGATAASRRWPAERFGEAAAAVAPLFDGIAV
TGSADERALVDAVCERAGPRAVPLAGVLPLGELGALVETADLLLSNNSGPVHLAAALGTPVVDLYALTNPQHTPWRVPHR
VLNVDVPCRNCYRSVCNQPGHPCLRGVSVDDVAAAVHALLRGRARHAQRAAEWAAAHDEGEPVAAHASNVIPFAHVITRN

Specific function: Catalyzes heptose transfer to the lipopolysaccharide core. It transfers a heptose, called heptose(III), to the heptose(II) of the inner core [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790062, Length=310, Percent_Identity=22.9032258064516, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011916 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 43284; Mature: 43153

Theoretical pI: Translated: 8.06; Mature: 8.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTAWSRARRILCVRLDSIGDVLMTTPALRALKESGADRQLTLLTSRTGAALAKHLPMVD
CCCHHHHHHEEEEEEECHHCHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHCCCHH
DVWSYDAPWVKHPDVRGDPVADLDMIDRLLAGRFDAAVIFTVYSQNPLPAAMMCWLAGIP
HHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHCCCH
LRLAHCRENPYELLTDRVPETEPESHVRHEVARQLALVRAIGAKTSDWRMAFEPGDAARR
HHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHH
AVHARLQAALQRIGGAREPGATRARWLVVHPGATAASRRWPAERFGEAAAAVAPLFDGIA
HHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHCCEE
VTGSADERALVDAVCERAGPRAVPLAGVLPLGELGALVETADLLLSNNSGPVHLAAALGT
EECCCCHHHHHHHHHHHCCCCCCCHHCCCCHHHHHHHHHHHHHHEECCCCCEEEEEHHCC
PVVDLYALTNPQHTPWRVPHRVLNVDVPCRNCYRSVCNQPGHPCLRGVSVDDVAAAVHAL
CCEEEEEECCCCCCCCCCCCEEEECCCCHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHH
LRGRARHAQRAAEWAAAHDEGEPVAAHASNVIPFAHVITRN
HHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHEECC
>Mature Secondary Structure 
STAWSRARRILCVRLDSIGDVLMTTPALRALKESGADRQLTLLTSRTGAALAKHLPMVD
CCHHHHHHEEEEEEECHHCHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHCCCHH
DVWSYDAPWVKHPDVRGDPVADLDMIDRLLAGRFDAAVIFTVYSQNPLPAAMMCWLAGIP
HHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHCCCH
LRLAHCRENPYELLTDRVPETEPESHVRHEVARQLALVRAIGAKTSDWRMAFEPGDAARR
HHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHH
AVHARLQAALQRIGGAREPGATRARWLVVHPGATAASRRWPAERFGEAAAAVAPLFDGIA
HHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHCCEE
VTGSADERALVDAVCERAGPRAVPLAGVLPLGELGALVETADLLLSNNSGPVHLAAALGT
EECCCCHHHHHHHHHHHCCCCCCCHHCCCCHHHHHHHHHHHHHHEECCCCCEEEEEHHCC
PVVDLYALTNPQHTPWRVPHRVLNVDVPCRNCYRSVCNQPGHPCLRGVSVDDVAAAVHAL
CCEEEEEECCCCCCCCCCCCEEEECCCCHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHH
LRGRARHAQRAAEWAAAHDEGEPVAAHASNVIPFAHVITRN
HHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Transferring other glycosyl groups [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1732225; 1447141; 8041620; 9278503 [H]