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The map label for this gene is ycjZ [C]

Identifier: 107022912

GI number: 107022912

Start: 1497831

End: 1498724

Strand: Reverse

Name: ycjZ [C]

Synonym: Bcen_1360

Alternate gene names: 107022912

Gene position: 1498724-1497831 (Counterclockwise)

Preceding gene: 107022915

Following gene: 107022908

Centisome position: 45.49

GC content: 68.23

Gene sequence:

>894_bases
ATGGCGCGCGAAAATTTCAACGATCTGCTCGTCTTTCTCGCGGTGGCCCGCGATCGCAGCTTCACGCGCGCGGCCGCGCG
GCTCGGCGTGTCGCAGTCGGCGCTGAGCCAGACCGTGCGCGATCTCGAAGCGCGGCTCGGCGTGCGGTTGCTGGCGCGCA
CGACGCGCAGCGTGTCGACGACCGAGGCCGGCGAAGCGCTGTTCAATGCGGTGGCGCCGCGCATCGACGAGATCTCGGCG
CAACTCGCCGCGCTGTCCGATTTCCGGGACAAGCCGGCCGGCGTGGTGCGCATCACGGCCACCGAGCATCCGATCGACAC
GGTCATCTGGCCGAAGCTGCGGGCCGTGCTGCCCGACTATCCGGACATCCGCGTCGAGCTGTCGGTCGACTACGGGTTGT
CGAATATCGTGGAAGAGCGCTACGACATCGGCGTGCGGTATGGCGACCAGGTGGCGCAGGACATGATCGCGGTGCGCATC
AGCCCGGACATCCGGATGGCGATGGTCGCCGCGCCGTCCTATCTCGACGGCCGCAAGCCGCCGAAGAAGCCGCAGGATCT
GCTCGACCACGACTGCGTGACGCTGCGGCTCGCGACCGCGAAGGGCATCTACGCGTGGGAATTGAAGAAGGGCAAGAACG
CGATCCAGGCGCGCGTGAACGGCCGGATCACCTGCAACACGCAGCCGCACCTGCTGCAGGCGGCGCTCGACGGCTTCGGC
ATCGCGTTCGTCACCGAGGACATCGCGCACGCGCATCTGCGCAGCGGCGCGCTGCGGATCGTGATGCCGGACTGGTGCCC
GGTGTTCCCCGGTTATCACGCGTACTATCCGAGCCGCCGCCAGGCGTCGCGCGCGTTTTCGGTCGTGATCGACGCGCTGC
GGCATCGGTCGTAG

Upstream 100 bases:

>100_bases
TCGATTAAGTAGCACGGCGCGCTTGGACTTATTAGCTAAACCGATGAATCGCCGCCGGCGATGCTACGATTGGCGCTCGT
CCCGACCGGAGCCTTTCGAC

Downstream 100 bases:

>100_bases
CGCACGGCGTCCGGCGCCGGCGCGGCGCGGGCCCCACGCGCGGATAGAAAAAGAACGCCCCGCGCGGGGCGGGGCGGGTC
GAACGGATGCGCCGGCGAAC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 296

Protein sequence:

>297_residues
MARENFNDLLVFLAVARDRSFTRAAARLGVSQSALSQTVRDLEARLGVRLLARTTRSVSTTEAGEALFNAVAPRIDEISA
QLAALSDFRDKPAGVVRITATEHPIDTVIWPKLRAVLPDYPDIRVELSVDYGLSNIVEERYDIGVRYGDQVAQDMIAVRI
SPDIRMAMVAAPSYLDGRKPPKKPQDLLDHDCVTLRLATAKGIYAWELKKGKNAIQARVNGRITCNTQPHLLQAALDGFG
IAFVTEDIAHAHLRSGALRIVMPDWCPVFPGYHAYYPSRRQASRAFSVVIDALRHRS

Sequences:

>Translated_297_residues
MARENFNDLLVFLAVARDRSFTRAAARLGVSQSALSQTVRDLEARLGVRLLARTTRSVSTTEAGEALFNAVAPRIDEISA
QLAALSDFRDKPAGVVRITATEHPIDTVIWPKLRAVLPDYPDIRVELSVDYGLSNIVEERYDIGVRYGDQVAQDMIAVRI
SPDIRMAMVAAPSYLDGRKPPKKPQDLLDHDCVTLRLATAKGIYAWELKKGKNAIQARVNGRITCNTQPHLLQAALDGFG
IAFVTEDIAHAHLRSGALRIVMPDWCPVFPGYHAYYPSRRQASRAFSVVIDALRHRS
>Mature_296_residues
ARENFNDLLVFLAVARDRSFTRAAARLGVSQSALSQTVRDLEARLGVRLLARTTRSVSTTEAGEALFNAVAPRIDEISAQ
LAALSDFRDKPAGVVRITATEHPIDTVIWPKLRAVLPDYPDIRVELSVDYGLSNIVEERYDIGVRYGDQVAQDMIAVRIS
PDIRMAMVAAPSYLDGRKPPKKPQDLLDHDCVTLRLATAKGIYAWELKKGKNAIQARVNGRITCNTQPHLLQAALDGFGI
AFVTEDIAHAHLRSGALRIVMPDWCPVFPGYHAYYPSRRQASRAFSVVIDALRHRS

Specific function: May have a role in the regulation of oprD expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787589, Length=297, Percent_Identity=44.4444444444444, Blast_Score=277, Evalue=5e-76,
Organism=Escherichia coli, GI1787128, Length=292, Percent_Identity=36.986301369863, Blast_Score=200, Evalue=1e-52,
Organism=Escherichia coli, GI1786401, Length=288, Percent_Identity=29.1666666666667, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI87081978, Length=302, Percent_Identity=31.1258278145695, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1789440, Length=260, Percent_Identity=28.0769230769231, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1789639, Length=292, Percent_Identity=28.0821917808219, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI145693193, Length=296, Percent_Identity=27.027027027027, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1789173, Length=273, Percent_Identity=29.3040293040293, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1786448, Length=296, Percent_Identity=23.3108108108108, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1788748, Length=138, Percent_Identity=36.9565217391304, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI157672245, Length=140, Percent_Identity=35.7142857142857, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787879, Length=165, Percent_Identity=32.1212121212121, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1790011, Length=269, Percent_Identity=22.3048327137546, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32928; Mature: 32797

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARENFNDLLVFLAVARDRSFTRAAARLGVSQSALSQTVRDLEARLGVRLLARTTRSVST
CCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
TEAGEALFNAVAPRIDEISAQLAALSDFRDKPAGVVRITATEHPIDTVIWPKLRAVLPDY
HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCC
PDIRVELSVDYGLSNIVEERYDIGVRYGDQVAQDMIAVRISPDIRMAMVAAPSYLDGRKP
CCEEEEEEECCCHHHHHHHHHHCCCCCHHHHHHHHEEEEECCCCEEEEEECCCHHCCCCC
PKKPQDLLDHDCVTLRLATAKGIYAWELKKGKNAIQARVNGRITCNTQPHLLQAALDGFG
CCCCHHHHCCCCEEEEEECCCCEEEEEECCCCHHHEEEECCEEEECCCHHHHHHHHCCCC
IAFVTEDIAHAHLRSGALRIVMPDWCPVFPGYHAYYPSRRQASRAFSVVIDALRHRS
EEEHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ARENFNDLLVFLAVARDRSFTRAAARLGVSQSALSQTVRDLEARLGVRLLARTTRSVST
CCCCHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
TEAGEALFNAVAPRIDEISAQLAALSDFRDKPAGVVRITATEHPIDTVIWPKLRAVLPDY
HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCC
PDIRVELSVDYGLSNIVEERYDIGVRYGDQVAQDMIAVRISPDIRMAMVAAPSYLDGRKP
CCEEEEEEECCCHHHHHHHHHHCCCCCHHHHHHHHEEEEECCCCEEEEEECCCHHCCCCC
PKKPQDLLDHDCVTLRLATAKGIYAWELKKGKNAIQARVNGRITCNTQPHLLQAALDGFG
CCCCHHHHCCCCEEEEEECCCCEEEEEECCCCHHHEEEECCEEEECCCHHHHHHHHCCCC
IAFVTEDIAHAHLRSGALRIVMPDWCPVFPGYHAYYPSRRQASRAFSVVIDALRHRS
EEEHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043; 1427017 [H]