| Definition | Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008060 |
| Length | 3,294,563 |
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The map label for this gene is yghA [H]
Identifier: 107022799
GI number: 107022799
Start: 1374027
End: 1375034
Strand: Reverse
Name: yghA [H]
Synonym: Bcen_1246
Alternate gene names: 107022799
Gene position: 1375034-1374027 (Counterclockwise)
Preceding gene: 107022800
Following gene: 107022798
Centisome position: 41.74
GC content: 69.05
Gene sequence:
>1008_bases ATGTCATCCGACGAAGTTTCCGAATCGCGCCGCAAATGGGTGCAAGGCACGACGGCCGGACTGGTCGCCAGCGTCGCCCT GCCGACGCTCGCGCAGACGGGCGGCGGCGCGCCCGACGCCGGCGATACGGCGCCGCGCGATCCGCGCACGCTTTATCCGC ATGCGCCGTTTCCGCAACAGCAGCAGCCCTGGCCGGGCCTCGCGGGCCGCATGACGCCGCGCCCCGATCACGGCGAGCGC AGTTATCGCGGCAGCGGCCGGCTCGACGGCCGCAAGGCGCTGATCACCGGCGGCGACTCGGGCATCGGCCGCGCGGTGGC GATTGCCTGTGCACGAGAAGGCGCGGACGTCGCGATCGTCTATCTGCCCGACGAGGAGCCCGATGCGCGCGAAGTCGTGG ACCAGATCCGCGGCGCGGGACGCAAGGCGGTGCCGCTGCCGGTCGACATTCGCAGTGAAGGCGCGTGCAACGGCCTCGTC GAACGGGCGGTCGCCGCGCTCGGCGGGCTCGACATTCTGGTGAACAACGCGGGCCGCCAGCAGAGCCACGAATCGATCCT CGACATCAGCACCGAGCAGTTCGACTGGACGCTGCGCACCAACCTTTACGCGATGTTCTGGATCACGCGGGCCGCCATTC CACACATGCCGCCCGGTTCGGCGATCGTCAACACGACGTCGGTCAATGCGTACGACCCGTCGGCGAACCTGCTGGACTAC GCGATGACGAAAGCGGCGATCGCGAATTTCACGAAGGGGCTCGCGAAGCAGATGATCAAGCGCGGCATCCGCGTCAACGG CGTCGCGCCGGGGCCGTTCTGGACGCCGTTGCAGGTCAGCGGCGGGCAGACGACGCACAACGTGGAGACGTTCGGCGAAC AGGTGCCGATGGGGCGGCCGGGGCAACCGGCCGAGATCGCGTCGATCTACGTCGAGCTGCTTTCGTCGCGTTCGAGCTAC GTGACCGGGCAGATCTATGGCGCGTCGGGTGGGGCGGGGCAGCCTTAG
Upstream 100 bases:
>100_bases TTCGGGCAACCGGCCGCGGCCGCTGTAGCGCACCGGAGCGGGGCGCCGGCCGAATCGTCACGCGTCGTTCCGTTCCGCCA TCCACGCACCGGAGTCCATC
Downstream 100 bases:
>100_bases TCGGCTGCGCGGTGCAGGCCGACGCGGCTGTATGCGGCCGGCGCCACCGTTCATCGACACCGCTTGGGCGATTCCGCCCC CAAATCGGCGCCGTATGCGC
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 335; Mature: 334
Protein sequence:
>335_residues MSSDEVSESRRKWVQGTTAGLVASVALPTLAQTGGGAPDAGDTAPRDPRTLYPHAPFPQQQQPWPGLAGRMTPRPDHGER SYRGSGRLDGRKALITGGDSGIGRAVAIACAREGADVAIVYLPDEEPDAREVVDQIRGAGRKAVPLPVDIRSEGACNGLV ERAVAALGGLDILVNNAGRQQSHESILDISTEQFDWTLRTNLYAMFWITRAAIPHMPPGSAIVNTTSVNAYDPSANLLDY AMTKAAIANFTKGLAKQMIKRGIRVNGVAPGPFWTPLQVSGGQTTHNVETFGEQVPMGRPGQPAEIASIYVELLSSRSSY VTGQIYGASGGAGQP
Sequences:
>Translated_335_residues MSSDEVSESRRKWVQGTTAGLVASVALPTLAQTGGGAPDAGDTAPRDPRTLYPHAPFPQQQQPWPGLAGRMTPRPDHGER SYRGSGRLDGRKALITGGDSGIGRAVAIACAREGADVAIVYLPDEEPDAREVVDQIRGAGRKAVPLPVDIRSEGACNGLV ERAVAALGGLDILVNNAGRQQSHESILDISTEQFDWTLRTNLYAMFWITRAAIPHMPPGSAIVNTTSVNAYDPSANLLDY AMTKAAIANFTKGLAKQMIKRGIRVNGVAPGPFWTPLQVSGGQTTHNVETFGEQVPMGRPGQPAEIASIYVELLSSRSSY VTGQIYGASGGAGQP >Mature_334_residues SSDEVSESRRKWVQGTTAGLVASVALPTLAQTGGGAPDAGDTAPRDPRTLYPHAPFPQQQQPWPGLAGRMTPRPDHGERS YRGSGRLDGRKALITGGDSGIGRAVAIACAREGADVAIVYLPDEEPDAREVVDQIRGAGRKAVPLPVDIRSEGACNGLVE RAVAALGGLDILVNNAGRQQSHESILDISTEQFDWTLRTNLYAMFWITRAAIPHMPPGSAIVNTTSVNAYDPSANLLDYA MTKAAIANFTKGLAKQMIKRGIRVNGVAPGPFWTPLQVSGGQTTHNVETFGEQVPMGRPGQPAEIASIYVELLSSRSSYV TGQIYGASGGAGQP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=246, Percent_Identity=32.1138211382114, Blast_Score=110, Evalue=1e-24, Organism=Homo sapiens, GI19923817, Length=264, Percent_Identity=31.0606060606061, Blast_Score=102, Evalue=6e-22, Organism=Homo sapiens, GI15277342, Length=256, Percent_Identity=31.640625, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI7705925, Length=252, Percent_Identity=31.7460317460317, Blast_Score=89, Evalue=5e-18, Organism=Homo sapiens, GI5031737, Length=250, Percent_Identity=29.6, Blast_Score=89, Evalue=6e-18, Organism=Homo sapiens, GI66933014, Length=253, Percent_Identity=31.2252964426877, Blast_Score=88, Evalue=1e-17, Organism=Homo sapiens, GI59889578, Length=219, Percent_Identity=29.6803652968037, Blast_Score=86, Evalue=5e-17, Organism=Homo sapiens, GI40254986, Length=200, Percent_Identity=30, Blast_Score=85, Evalue=7e-17, Organism=Homo sapiens, GI40254992, Length=239, Percent_Identity=29.7071129707113, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI10190704, Length=259, Percent_Identity=30.8880308880309, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI4758504, Length=258, Percent_Identity=28.6821705426357, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI126723750, Length=249, Percent_Identity=27.710843373494, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI4504505, Length=193, Percent_Identity=34.1968911917098, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI33667109, Length=191, Percent_Identity=30.8900523560209, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI126723191, Length=183, Percent_Identity=30.6010928961749, Blast_Score=76, Evalue=5e-14, Organism=Homo sapiens, GI31542939, Length=199, Percent_Identity=28.643216080402, Blast_Score=70, Evalue=4e-12, Organism=Escherichia coli, GI1789378, Length=286, Percent_Identity=56.6433566433566, Blast_Score=331, Evalue=5e-92, Organism=Escherichia coli, GI2367175, Length=252, Percent_Identity=37.3015873015873, Blast_Score=132, Evalue=3e-32, Organism=Escherichia coli, GI87082100, Length=261, Percent_Identity=33.3333333333333, Blast_Score=122, Evalue=2e-29, Organism=Escherichia coli, GI1787905, Length=251, Percent_Identity=35.0597609561753, Blast_Score=117, Evalue=9e-28, Organism=Escherichia coli, GI1789208, Length=248, Percent_Identity=31.8548387096774, Blast_Score=116, Evalue=2e-27, Organism=Escherichia coli, GI1788459, Length=246, Percent_Identity=33.739837398374, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI87082160, Length=246, Percent_Identity=30.8943089430894, Blast_Score=109, Evalue=2e-25, Organism=Escherichia coli, GI1790717, Length=246, Percent_Identity=28.0487804878049, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1787335, Length=248, Percent_Identity=31.0483870967742, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI2367365, Length=249, Percent_Identity=30.5220883534137, Blast_Score=88, Evalue=1e-18, Organism=Escherichia coli, GI1786812, Length=260, Percent_Identity=26.9230769230769, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1787526, Length=249, Percent_Identity=27.710843373494, Blast_Score=62, Evalue=4e-11, Organism=Caenorhabditis elegans, GI71994604, Length=249, Percent_Identity=33.7349397590361, Blast_Score=124, Evalue=7e-29, Organism=Caenorhabditis elegans, GI71994600, Length=251, Percent_Identity=32.2709163346614, Blast_Score=117, Evalue=8e-27, Organism=Caenorhabditis elegans, GI17531453, Length=270, Percent_Identity=33.3333333333333, Blast_Score=116, Evalue=2e-26, Organism=Caenorhabditis elegans, GI17562906, Length=262, Percent_Identity=32.4427480916031, Blast_Score=115, Evalue=3e-26, Organism=Caenorhabditis elegans, GI25147288, Length=251, Percent_Identity=32.2709163346614, Blast_Score=110, Evalue=7e-25, Organism=Caenorhabditis elegans, GI17559104, Length=264, Percent_Identity=32.5757575757576, Blast_Score=110, Evalue=8e-25, Organism=Caenorhabditis elegans, GI193204405, Length=263, Percent_Identity=31.9391634980989, Blast_Score=110, Evalue=9e-25, Organism=Caenorhabditis elegans, GI17561402, Length=251, Percent_Identity=31.8725099601594, Blast_Score=110, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17562904, Length=261, Percent_Identity=31.4176245210728, Blast_Score=105, Evalue=4e-23, Organism=Caenorhabditis elegans, GI17560150, Length=262, Percent_Identity=32.824427480916, Blast_Score=103, Evalue=8e-23, Organism=Caenorhabditis elegans, GI17562908, Length=263, Percent_Identity=30.4182509505703, Blast_Score=102, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17560220, Length=264, Percent_Identity=31.8181818181818, Blast_Score=101, Evalue=7e-22, Organism=Caenorhabditis elegans, GI17562910, Length=263, Percent_Identity=31.1787072243346, Blast_Score=101, Evalue=7e-22, Organism=Caenorhabditis elegans, GI17538480, Length=264, Percent_Identity=30.6818181818182, Blast_Score=101, Evalue=7e-22, Organism=Caenorhabditis elegans, GI17562990, Length=261, Percent_Identity=32.5670498084291, Blast_Score=100, Evalue=9e-22, Organism=Caenorhabditis elegans, GI17560676, Length=246, Percent_Identity=28.0487804878049, Blast_Score=100, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17563726, Length=258, Percent_Identity=31.0077519379845, Blast_Score=98, Evalue=6e-21, Organism=Caenorhabditis elegans, GI17551412, Length=263, Percent_Identity=30.0380228136882, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI72000259, Length=261, Percent_Identity=31.0344827586207, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17560332, Length=264, Percent_Identity=31.4393939393939, Blast_Score=93, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17544670, Length=262, Percent_Identity=26.3358778625954, Blast_Score=89, Evalue=4e-18, Organism=Caenorhabditis elegans, GI17536025, Length=262, Percent_Identity=29.0076335877863, Blast_Score=87, Evalue=9e-18, Organism=Caenorhabditis elegans, GI17555706, Length=254, Percent_Identity=29.9212598425197, Blast_Score=86, Evalue=4e-17, Organism=Caenorhabditis elegans, GI71982365, Length=207, Percent_Identity=30.4347826086957, Blast_Score=85, Evalue=7e-17, Organism=Caenorhabditis elegans, GI17538182, Length=250, Percent_Identity=29.6, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI17538486, Length=264, Percent_Identity=28.030303030303, Blast_Score=80, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17508651, Length=251, Percent_Identity=27.8884462151394, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17565030, Length=261, Percent_Identity=29.1187739463602, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17536651, Length=256, Percent_Identity=27.734375, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17564282, Length=229, Percent_Identity=27.9475982532751, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17561272, Length=261, Percent_Identity=29.5019157088123, Blast_Score=74, Evalue=2e-13, Organism=Caenorhabditis elegans, GI193203117, Length=224, Percent_Identity=25.4464285714286, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI115534694, Length=245, Percent_Identity=25.7142857142857, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17568967, Length=195, Percent_Identity=27.6923076923077, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI193203115, Length=185, Percent_Identity=28.1081081081081, Blast_Score=65, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17558628, Length=206, Percent_Identity=26.2135922330097, Blast_Score=64, Evalue=9e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=205, Percent_Identity=27.8048780487805, Blast_Score=71, Evalue=3e-13, Organism=Saccharomyces cerevisiae, GI6322861, Length=196, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=2e-11, Organism=Drosophila melanogaster, GI23397609, Length=251, Percent_Identity=32.6693227091633, Blast_Score=123, Evalue=2e-28, Organism=Drosophila melanogaster, GI21357041, Length=244, Percent_Identity=34.0163934426229, Blast_Score=116, Evalue=2e-26, Organism=Drosophila melanogaster, GI28571526, Length=237, Percent_Identity=33.7552742616034, Blast_Score=111, Evalue=5e-25, Organism=Drosophila melanogaster, GI24644339, Length=248, Percent_Identity=33.0645161290323, Blast_Score=107, Evalue=1e-23, Organism=Drosophila melanogaster, GI21355319, Length=247, Percent_Identity=28.3400809716599, Blast_Score=100, Evalue=2e-21, Organism=Drosophila melanogaster, GI24639444, Length=251, Percent_Identity=33.8645418326693, Blast_Score=99, Evalue=3e-21, Organism=Drosophila melanogaster, GI17737361, Length=232, Percent_Identity=31.0344827586207, Blast_Score=89, Evalue=6e-18, Organism=Drosophila melanogaster, GI24643142, Length=244, Percent_Identity=29.5081967213115, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI21357673, Length=196, Percent_Identity=30.1020408163265, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI24644337, Length=173, Percent_Identity=34.1040462427746, Blast_Score=79, Evalue=6e-15, Organism=Drosophila melanogaster, GI24665243, Length=215, Percent_Identity=30.2325581395349, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24584744, Length=215, Percent_Identity=28.8372093023256, Blast_Score=70, Evalue=3e-12, Organism=Drosophila melanogaster, GI28574402, Length=215, Percent_Identity=28.8372093023256, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI18859837, Length=201, Percent_Identity=29.8507462686567, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI221331218, Length=197, Percent_Identity=30.9644670050761, Blast_Score=68, Evalue=9e-12, Organism=Drosophila melanogaster, GI24584748, Length=188, Percent_Identity=32.4468085106383, Blast_Score=68, Evalue=1e-11, Organism=Drosophila melanogaster, GI161076933, Length=188, Percent_Identity=32.4468085106383, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24665247, Length=216, Percent_Identity=30.0925925925926, Blast_Score=67, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 35408; Mature: 35277
Theoretical pI: Translated: 7.06; Mature: 7.06
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSDEVSESRRKWVQGTTAGLVASVALPTLAQTGGGAPDAGDTAPRDPRTLYPHAPFPQQ CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCC QQPWPGLAGRMTPRPDHGERSYRGSGRLDGRKALITGGDSGIGRAVAIACAREGADVAIV CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHEEEEECCCCCCEEEE YLPDEEPDAREVVDQIRGAGRKAVPLPVDIRSEGACNGLVERAVAALGGLDILVNNAGRQ ECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCH QSHESILDISTEQFDWTLRTNLYAMFWITRAAIPHMPPGSAIVNTTSVNAYDPSANLLDY HHHHHHHHCCHHHEEEEHHHCCEEEEHHHHHHCCCCCCCCEEEEECCCCCCCCCCHHHHH AMTKAAIANFTKGLAKQMIKRGIRVNGVAPGPFWTPLQVSGGQTTHNVETFGEQVPMGRP HHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCEEECCCCCCCHHHHHHHHCCCCCC GQPAEIASIYVELLSSRSSYVTGQIYGASGGAGQP CCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC >Mature Secondary Structure SSDEVSESRRKWVQGTTAGLVASVALPTLAQTGGGAPDAGDTAPRDPRTLYPHAPFPQQ CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCC QQPWPGLAGRMTPRPDHGERSYRGSGRLDGRKALITGGDSGIGRAVAIACAREGADVAIV CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHEEEEECCCCCCEEEE YLPDEEPDAREVVDQIRGAGRKAVPLPVDIRSEGACNGLVERAVAALGGLDILVNNAGRQ ECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCH QSHESILDISTEQFDWTLRTNLYAMFWITRAAIPHMPPGSAIVNTTSVNAYDPSANLLDY HHHHHHHHCCHHHEEEEHHHCCEEEEHHHHHHCCCCCCCCEEEEECCCCCCCCCCHHHHH AMTKAAIANFTKGLAKQMIKRGIRVNGVAPGPFWTPLQVSGGQTTHNVETFGEQVPMGRP HHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCEEECCCCCCCHHHHHHHHCCCCCC GQPAEIASIYVELLSSRSSYVTGQIYGASGGAGQP CCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]