| Definition | Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008060 |
| Length | 3,294,563 |
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The map label for this gene is iagB [H]
Identifier: 107022428
GI number: 107022428
Start: 948473
End: 950272
Strand: Reverse
Name: iagB [H]
Synonym: Bcen_0873
Alternate gene names: 107022428
Gene position: 950272-948473 (Counterclockwise)
Preceding gene: 107022430
Following gene: 107022426
Centisome position: 28.84
GC content: 68.83
Gene sequence:
>1800_bases ATGCCGCGTCATACCACTCGCCTGTTCGGCCGCCACTCGCTGCCCTTCGCCTCGACGATCGCGCTCGCGTGCGCGCTCTG CGGCGTCGCGCGGGCAGATTGCCTGGACGACGCGGCCGCGTTCCAGCACGTGAGCGTCGCCCTGATGCGCGGCATCGCGC AAGTCGAATCGGGGATGAATCCGAACGCCGTCAACACGAATACCAACGGCACGGTCGACATCGGGCTGATGCAGATCAAC AGCACGTGGCTGCCGACGCTCGCCCGCGAAGGCATCACACGGGAAAGCCTGTTCGATGCGTGCACGAACGCGTACGTCGG TGCGTGGATCCTGTCGCAGAACATCCGCCAGCTCGGCCCCAACTGGAACGCGATCGGCGCGTACAACTCCGCGTCGCCCG ACAAGCGCCTCGCCTATGCGCGCAAGGTCTATGATGCAATCCGGACCATGCCGGATTCGCCGGATACTCCCATGCCCATC CTTCCACCCTCCTTCACGCCGCCGCAACAGGCGCAGACGTACAACCCGTTCGCGAGCCTGAGCGTGTCGGCGCCGCCCGT CACGCGCGCACGGACGATCTCGCCGGCCTCGCCGCCGGCGCCGCCGCAGGGGGGCCCCGCCGGCCCGGCCGGTACGTACA ATTTCGGATGGACGGTCACCGGCGCCGATCAGGCCAAGCCGACCCAGGTGTTCGACGACGGTGCGCGCGTCTACGTGCAG TTCAGCGACATGAAGCACGTGCCGGCGATCTTCACCGAGACGTCGGCCGGGCGCGTGCTGATGTCGTGGGAGCTGCAGTT TCCCTATGCCGTCGTGACGCGTCCCGCGCAAACGTTGATCTTCCAGCTCGGGCCGTTCGAAGCGCGCGCAGCGCAGTGCG GCGGCCGCAGGCATGACCGCGCAGGCCGGGACGGCCGGCACGGCGACGGCCGGCGCATCGGCCCCGCCATCGAGGAAGCC GGCCGGTGCGGCAGCGAATGCCGCGACGAACACGGCAGCCAATACGGCAGCGAAACGCACCGCCTCGGCCGATGCGCTGT GGTACGTGAATACGCCGTCCACGTCGGGAACGGCGGCGGCCTCGCCTTCGACCGCGAATATTCCTGCCACGCTGCCGACG GCCATCACGTCGAACACGCCGCCACTCGCGCCGGCTCAAGCACCGGCCGCGGCCGCTCAGCCGTCGCGCGCCAGCGCGGA CGCGCTGTGGTACATCTCGAAGTAACGCGCGTCCGATCGCACGCGCATCGCGGCGATCATTTCCGTGCGGTCAGCGGCAG TTCCGACGCGCCGGGCTTCATGACATACCCGCGCAGATCGCGCGACGTCGACGATTCCGGTGACGCAATCGTCACACGGC CCTCACCCGCGCCGCACCCAGATCACCTTGCCGTCGCGAATGCCGAGATTGCGGCGCTCCTCGCGGTAGTCCATCGTGCC CGGCAACGACTTGCCGTCGCGCTCGAGCACGCGCCACAGGCAGCCGTCGAGCAGCGCGGTCGCATCGGCCTCGGTCTTGC CGACCAGCGCATCGTCCGGTGCGGCGTCCGCCTTGCATGCCTGCGCGGCGCCCGACTGCAGAGGGGGCCTGGCCGCGCCG CCCGCGGTGGCGTTGGGGTGTTTCGTGTCCATGTCCGCACATCCTGCAAAAGTTGCACTCGCAACGAGTGCAACGAGCAT CGCGATCGTGTTCTTCATCGGTTTCTCCCTGTCGCGGGCCCGGCGGTCCATGTGCGGCACTCGTGCACGACCGGGCATCG CATGCGTGATCGATTCCGCACGCTGCCGGCCGTTTCCTGA
Upstream 100 bases:
>100_bases AAGGAAAGTTTGACGCGAGCCATTTGCCCGGCTGCTATGGCACACTTCGCGTCTGCGTAATTTCCTTGCACCGGGCGCCC GGATTCCGCCCCATCCTGCC
Downstream 100 bases:
>100_bases CGGAGCCGGCCAGCGCATGGCTGCCTTTCGCGAGCCGGCCGCGCCGCTCCGGCGCACCCGCGTCGCAAGCCCGGCCTGAC GCCGAACCCGAGCGCATGTT
Product: lytic transglycosylase, catalytic
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 599; Mature: 598
Protein sequence:
>599_residues MPRHTTRLFGRHSLPFASTIALACALCGVARADCLDDAAAFQHVSVALMRGIAQVESGMNPNAVNTNTNGTVDIGLMQIN STWLPTLAREGITRESLFDACTNAYVGAWILSQNIRQLGPNWNAIGAYNSASPDKRLAYARKVYDAIRTMPDSPDTPMPI LPPSFTPPQQAQTYNPFASLSVSAPPVTRARTISPASPPAPPQGGPAGPAGTYNFGWTVTGADQAKPTQVFDDGARVYVQ FSDMKHVPAIFTETSAGRVLMSWELQFPYAVVTRPAQTLIFQLGPFEARAAQCGGRRHDRAGRDGRHGDGRRIGPAIEEA GRCGSECRDEHGSQYGSETHRLGRCAVVREYAVHVGNGGGLAFDREYSCHAADGHHVEHAATRAGSSTGRGRSAVARQRG RAVVHLEVTRVRSHAHRGDHFRAVSGSSDAPGFMTYPRRSRDVDDSGDAIVTRPSPAPHPDHLAVANAEIAALLAVVHRA RQRLAVALEHAPQAAVEQRGRIGLGLADQRIVRCGVRLACLRGARLQRGPGRAARGGVGVFRVHVRTSCKSCTRNECNEH RDRVLHRFLPVAGPAVHVRHSCTTGHRMRDRFRTLPAVS
Sequences:
>Translated_599_residues MPRHTTRLFGRHSLPFASTIALACALCGVARADCLDDAAAFQHVSVALMRGIAQVESGMNPNAVNTNTNGTVDIGLMQIN STWLPTLAREGITRESLFDACTNAYVGAWILSQNIRQLGPNWNAIGAYNSASPDKRLAYARKVYDAIRTMPDSPDTPMPI LPPSFTPPQQAQTYNPFASLSVSAPPVTRARTISPASPPAPPQGGPAGPAGTYNFGWTVTGADQAKPTQVFDDGARVYVQ FSDMKHVPAIFTETSAGRVLMSWELQFPYAVVTRPAQTLIFQLGPFEARAAQCGGRRHDRAGRDGRHGDGRRIGPAIEEA GRCGSECRDEHGSQYGSETHRLGRCAVVREYAVHVGNGGGLAFDREYSCHAADGHHVEHAATRAGSSTGRGRSAVARQRG RAVVHLEVTRVRSHAHRGDHFRAVSGSSDAPGFMTYPRRSRDVDDSGDAIVTRPSPAPHPDHLAVANAEIAALLAVVHRA RQRLAVALEHAPQAAVEQRGRIGLGLADQRIVRCGVRLACLRGARLQRGPGRAARGGVGVFRVHVRTSCKSCTRNECNEH RDRVLHRFLPVAGPAVHVRHSCTTGHRMRDRFRTLPAVS >Mature_598_residues PRHTTRLFGRHSLPFASTIALACALCGVARADCLDDAAAFQHVSVALMRGIAQVESGMNPNAVNTNTNGTVDIGLMQINS TWLPTLAREGITRESLFDACTNAYVGAWILSQNIRQLGPNWNAIGAYNSASPDKRLAYARKVYDAIRTMPDSPDTPMPIL PPSFTPPQQAQTYNPFASLSVSAPPVTRARTISPASPPAPPQGGPAGPAGTYNFGWTVTGADQAKPTQVFDDGARVYVQF SDMKHVPAIFTETSAGRVLMSWELQFPYAVVTRPAQTLIFQLGPFEARAAQCGGRRHDRAGRDGRHGDGRRIGPAIEEAG RCGSECRDEHGSQYGSETHRLGRCAVVREYAVHVGNGGGLAFDREYSCHAADGHHVEHAATRAGSSTGRGRSAVARQRGR AVVHLEVTRVRSHAHRGDHFRAVSGSSDAPGFMTYPRRSRDVDDSGDAIVTRPSPAPHPDHLAVANAEIAALLAVVHRAR QRLAVALEHAPQAAVEQRGRIGLGLADQRIVRCGVRLACLRGARLQRGPGRAARGGVGVFRVHVRTSCKSCTRNECNEHR DRVLHRFLPVAGPAVHVRHSCTTGHRMRDRFRTLPAVS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the iagB/ipgF/P19 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008258 [H]
Pfam domain/function: PF01464 SLT [H]
EC number: NA
Molecular weight: Translated: 64657; Mature: 64525
Theoretical pI: Translated: 10.23; Mature: 10.23
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRHTTRLFGRHSLPFASTIALACALCGVARADCLDDAAAFQHVSVALMRGIAQVESGMN CCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC PNAVNTNTNGTVDIGLMQINSTWLPTLAREGITRESLFDACTNAYVGAWILSQNIRQLGP CCCCCCCCCCEEEEEEEEECCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC NWNAIGAYNSASPDKRLAYARKVYDAIRTMPDSPDTPMPILPPSFTPPQQAQTYNPFASL CCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEE SVSAPPVTRARTISPASPPAPPQGGPAGPAGTYNFGWTVTGADQAKPTQVFDDGARVYVQ EECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEECCCCEEEEE FSDMKHVPAIFTETSAGRVLMSWELQFPYAVVTRPAQTLIFQLGPFEARAAQCGGRRHDR ECCCCCCCCEEECCCCCEEEEEEEECCCHHHHCCCHHHHHEECCCCHHHHHHCCCCCCCC AGRDGRHGDGRRIGPAIEEAGRCGSECRDEHGSQYGSETHRLGRCAVVREYAVHVGNGGG CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHEEEHHHEECCCCC LAFDREYSCHAADGHHVEHAATRAGSSTGRGRSAVARQRGRAVVHLEVTRVRSHAHRGDH EEECCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHCCEEEEEEHHHHHHHHCCCCC FRAVSGSSDAPGFMTYPRRSRDVDDSGDAIVTRPSPAPHPDHLAVANAEIAALLAVVHRA EEEECCCCCCCCCEECCCCCCCCCCCCCEEEECCCCCCCCCCEEECCHHHHHHHHHHHHH RQRLAVALEHAPQAAVEQRGRIGLGLADQRIVRCGVRLACLRGARLQRGPGRAARGGVGV HHHHHHHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCEE FRVHVRTSCKSCTRNECNEHRDRVLHRFLPVAGPAVHVRHSCTTGHRMRDRFRTLPAVS EEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCC >Mature Secondary Structure PRHTTRLFGRHSLPFASTIALACALCGVARADCLDDAAAFQHVSVALMRGIAQVESGMN CCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC PNAVNTNTNGTVDIGLMQINSTWLPTLAREGITRESLFDACTNAYVGAWILSQNIRQLGP CCCCCCCCCCEEEEEEEEECCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC NWNAIGAYNSASPDKRLAYARKVYDAIRTMPDSPDTPMPILPPSFTPPQQAQTYNPFASL CCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEE SVSAPPVTRARTISPASPPAPPQGGPAGPAGTYNFGWTVTGADQAKPTQVFDDGARVYVQ EECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEECCCCEEEEE FSDMKHVPAIFTETSAGRVLMSWELQFPYAVVTRPAQTLIFQLGPFEARAAQCGGRRHDR ECCCCCCCCEEECCCCCEEEEEEEECCCHHHHCCCHHHHHEECCCCHHHHHHCCCCCCCC AGRDGRHGDGRRIGPAIEEAGRCGSECRDEHGSQYGSETHRLGRCAVVREYAVHVGNGGG CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHEEEHHHEECCCCC LAFDREYSCHAADGHHVEHAATRAGSSTGRGRSAVARQRGRAVVHLEVTRVRSHAHRGDH EEECCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHCCEEEEEEHHHHHHHHCCCCC FRAVSGSSDAPGFMTYPRRSRDVDDSGDAIVTRPSPAPHPDHLAVANAEIAALLAVVHRA EEEECCCCCCCCCEECCCCCCCCCCCCCEEEECCCCCCCCCCEEECCHHHHHHHHHHHHH RQRLAVALEHAPQAAVEQRGRIGLGLADQRIVRCGVRLACLRGARLQRGPGRAARGGVGV HHHHHHHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCEE FRVHVRTSCKSCTRNECNEHRDRVLHRFLPVAGPAVHVRHSCTTGHRMRDRFRTLPAVS EEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7754225; 11677608; 12644504 [H]