| Definition | Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008060 |
| Length | 3,294,563 |
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The map label for this gene is 107022394
Identifier: 107022394
GI number: 107022394
Start: 907644
End: 908108
Strand: Reverse
Name: 107022394
Synonym: Bcen_0839
Alternate gene names: NA
Gene position: 908108-907644 (Counterclockwise)
Preceding gene: 107022395
Following gene: 107022392
Centisome position: 27.56
GC content: 66.02
Gene sequence:
>465_bases ATGCCTCGCAAATCGAATGCAACCAAGGCACTCACCGGAACGTTGCGCGGCGACCGCCTCAAAGGCGTCGCGGCCGAACA ATTGGACACTGCACCGCCGCCGCCGGATAGCCTGTCGCTGCGTGCAGTCATAGAGTGGCAGCGTGTCGCGCCGCTTGTGG TGAGTTTGGGCCTTTTGACCGCGTCCGATCTGCGTGCGCTCGAACTGCTCGCCGAAACATTGGCAACGGAGGCGCAGTTG CGCGAGACGCTCGACCGTGAAGGGTTGACGATTGCGACCGGAACCGGCGGAAGCAAGGCGCATCCGGCGCTGCGCGCGCT GAGCGACGCACGCGCACAAGCGTCCCGGCTGCTCGATGCGTTCGGCCTGAGTCCGCGCGGACGGCAAGCTATTGACGCGC CGCCGCCGTTGCCGCCCGACAATCCCTACGCGGCGTTCGTTAAGTCGGCGCGTAGCTCGCGTTGA
Upstream 100 bases:
>100_bases CGTACGCGGGCAACATCCTTCTCGTGGTTAAGTAGACGCTTCCGATTATTTCTTGGGATTATTGTCACATCCGCGACGAA GTGTATTTTCGGGAGGAATC
Downstream 100 bases:
>100_bases TCGAAAATGCCTACACGATGCCTACACGGCGACGCGCAAGAAAAAGTCCATGGGCAGAAATTGCCGTAACCCATTGATTT TACTGGCCCGCCCTACACGA
Product: phage terminase, small subunit, , P27
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 154; Mature: 153
Protein sequence:
>154_residues MPRKSNATKALTGTLRGDRLKGVAAEQLDTAPPPPDSLSLRAVIEWQRVAPLVVSLGLLTASDLRALELLAETLATEAQL RETLDREGLTIATGTGGSKAHPALRALSDARAQASRLLDAFGLSPRGRQAIDAPPPLPPDNPYAAFVKSARSSR
Sequences:
>Translated_154_residues MPRKSNATKALTGTLRGDRLKGVAAEQLDTAPPPPDSLSLRAVIEWQRVAPLVVSLGLLTASDLRALELLAETLATEAQL RETLDREGLTIATGTGGSKAHPALRALSDARAQASRLLDAFGLSPRGRQAIDAPPPLPPDNPYAAFVKSARSSR >Mature_153_residues PRKSNATKALTGTLRGDRLKGVAAEQLDTAPPPPDSLSLRAVIEWQRVAPLVVSLGLLTASDLRALELLAETLATEAQLR ETLDREGLTIATGTGGSKAHPALRALSDARAQASRLLDAFGLSPRGRQAIDAPPPLPPDNPYAAFVKSARSSR
Specific function: Unknown
COG id: COG3747
COG function: function code L; Phage terminase, small subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16237; Mature: 16105
Theoretical pI: Translated: 10.64; Mature: 10.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 0.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRKSNATKALTGTLRGDRLKGVAAEQLDTAPPPPDSLSLRAVIEWQRVAPLVVSLGLLT CCCCCCCCHHHHHCCCCCHHCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH ASDLRALELLAETLATEAQLRETLDREGLTIATGTGGSKAHPALRALSDARAQASRLLDA HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH FGLSPRGRQAIDAPPPLPPDNPYAAFVKSARSSR HCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC >Mature Secondary Structure PRKSNATKALTGTLRGDRLKGVAAEQLDTAPPPPDSLSLRAVIEWQRVAPLVVSLGLLT CCCCCCCHHHHHCCCCCHHCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH ASDLRALELLAETLATEAQLRETLDREGLTIATGTGGSKAHPALRALSDARAQASRLLDA HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH FGLSPRGRQAIDAPPPLPPDNPYAAFVKSARSSR HCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA