| Definition | Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008060 |
| Length | 3,294,563 |
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The map label for this gene is mdtA [H]
Identifier: 107022275
GI number: 107022275
Start: 776384
End: 777757
Strand: Reverse
Name: mdtA [H]
Synonym: Bcen_0719
Alternate gene names: 107022275
Gene position: 777757-776384 (Counterclockwise)
Preceding gene: 107022276
Following gene: 107022274
Centisome position: 23.61
GC content: 68.34
Gene sequence:
>1374_bases ATGGATAACGAACAAAAGCCCACGCCCCCTTCGAAAGACTCCGCGCCCGCCGCTGCACGGCGCCCGCGCCGCACGCTGCT GATCGGCACCGTCGCGGTCGTCGTCATCGGCGGCCTGCTGTGGTGGCATCCGTGGAACCGCACGCCCGCGACAGGCAGTT CGGCGCAAGGCGCGGGCGCCAGCGCGGCCGCAGGCAGCCATCGCGGCCGCGGCGGCCCCGCTGCAATGGCGAACGTTCCG CAGCCGGTGCAGGTCGCCCCCGTGACGCAGGGCGAGATGCCGATCGTGCTGTCCGCGCTCGGCACCGTCACGCCGCTCGC GAACGTGACGGTCAAGACGCAGTTGTCGGGCTACCTGCAGTCGGTGTCGTTCCAGGAAGGCCAGATCGTCAAGAAAGGCG ACGTGCTCGCGCAGATCGACCCGCGCCCGTACCAGGTCGCGCTCGAGAACGCCGAAGGCACGCATGCGCGCGACGCGGCG CTGCTCGCGACGGCCCGCCTCGACCTGAAGCGCTACCAGACGCTGCTGTCGCAGGACTCGATCGCGTCGCAAACCGTCGA TACGCAGGCATCGCTCGTCAAGCAATACGAAGGCGCGGTGAAGACCGACCAGGCCGCGATCGATTCCGCGAAACTCAATC TCACCTATGCGCGCATCACGGCGCCGGTCTCCGGCCGCGTCGGCCTGCGCCAGGTCGACCCCGGCAACTACGTGACGCCG GGCGACACCAACGGCATCGTCGTGATCATGCAGTTGCAGCCGATGAGCGTGATCTTCACGACGTCGGAAGACAACCTGCC GCAGATCCTCAAGCAGGTGAACGCCGGCCAGAAGCTGTCGGTCACCGCCTACAACCGCAACAACACCGTGCCGCTCGAAA CGGGCTCGCTCGCGACGCTCGACAACCAGATCGACACGAGCACCGGCACGGTCAAGCTGCGCGCGAACTTCGATAACAAG GAAGGCATGCTGTTCCCGAATCAGTTCGTGAACACGCGGCTGCTCGTCGACGTGATGCGCAACGCGACGATCGTGCCGAC CTCCGCCGTGCTGACGGGGTCGATCGGCCAGTTCGTCTATGTCGTGAAACCCGACAACACGGTGACGGTGCGCAAGGTCA CGGTCGGCCCGGTCGACGGCGAACGCACGAGCATCGTCAGCGGCGTGACGCTCGGCGAGCGCGTGGTGACCGACGGCTCG GACCGTCTGCGCGAAGGCTCGAAGATCTCGATTCCGGCCGACAAGCCGAAGGGCGCATCGGGCGCGCGCGGCGCAGGGGC CGCATCGGGTGCATCGGCTGCGTCCGGTGCCGGCGGCCATCGCGGCGGACACCGGCACGGCGCGTCGCAAGCCGCAGCCC CCGCGGCCCAGTAA
Upstream 100 bases:
>100_bases CGGACCGAGCCGGGCCGCCCCGTCCCGTCACCCGCACGCCCACGCGCAGCCCAGCAGTCCGATTTTCCGGCCCGCCGCGC CGTCTTCCTGACAGAACACG
Downstream 100 bases:
>100_bases CGCGCGGGCCGCTCGATGAATCCATCCCGCCTCTTCATTCTCCGGCCGGTCGGTACCGCTCTCCTGATGGCGGCGATCAT GCTGGCCGGCCTCGTCGCGC
Product: secretion protein HlyD
Products: NA
Alternate protein names: Multidrug transporter mdtA [H]
Number of amino acids: Translated: 457; Mature: 457
Protein sequence:
>457_residues MDNEQKPTPPSKDSAPAAARRPRRTLLIGTVAVVVIGGLLWWHPWNRTPATGSSAQGAGASAAAGSHRGRGGPAAMANVP QPVQVAPVTQGEMPIVLSALGTVTPLANVTVKTQLSGYLQSVSFQEGQIVKKGDVLAQIDPRPYQVALENAEGTHARDAA LLATARLDLKRYQTLLSQDSIASQTVDTQASLVKQYEGAVKTDQAAIDSAKLNLTYARITAPVSGRVGLRQVDPGNYVTP GDTNGIVVIMQLQPMSVIFTTSEDNLPQILKQVNAGQKLSVTAYNRNNTVPLETGSLATLDNQIDTSTGTVKLRANFDNK EGMLFPNQFVNTRLLVDVMRNATIVPTSAVLTGSIGQFVYVVKPDNTVTVRKVTVGPVDGERTSIVSGVTLGERVVTDGS DRLREGSKISIPADKPKGASGARGAGAASGASAASGAGGHRGGHRHGASQAAAPAAQ
Sequences:
>Translated_457_residues MDNEQKPTPPSKDSAPAAARRPRRTLLIGTVAVVVIGGLLWWHPWNRTPATGSSAQGAGASAAAGSHRGRGGPAAMANVP QPVQVAPVTQGEMPIVLSALGTVTPLANVTVKTQLSGYLQSVSFQEGQIVKKGDVLAQIDPRPYQVALENAEGTHARDAA LLATARLDLKRYQTLLSQDSIASQTVDTQASLVKQYEGAVKTDQAAIDSAKLNLTYARITAPVSGRVGLRQVDPGNYVTP GDTNGIVVIMQLQPMSVIFTTSEDNLPQILKQVNAGQKLSVTAYNRNNTVPLETGSLATLDNQIDTSTGTVKLRANFDNK EGMLFPNQFVNTRLLVDVMRNATIVPTSAVLTGSIGQFVYVVKPDNTVTVRKVTVGPVDGERTSIVSGVTLGERVVTDGS DRLREGSKISIPADKPKGASGARGAGAASGASAASGAGGHRGGHRHGASQAAAPAAQ >Mature_457_residues MDNEQKPTPPSKDSAPAAARRPRRTLLIGTVAVVVIGGLLWWHPWNRTPATGSSAQGAGASAAAGSHRGRGGPAAMANVP QPVQVAPVTQGEMPIVLSALGTVTPLANVTVKTQLSGYLQSVSFQEGQIVKKGDVLAQIDPRPYQVALENAEGTHARDAA LLATARLDLKRYQTLLSQDSIASQTVDTQASLVKQYEGAVKTDQAAIDSAKLNLTYARITAPVSGRVGLRQVDPGNYVTP GDTNGIVVIMQLQPMSVIFTTSEDNLPQILKQVNAGQKLSVTAYNRNNTVPLETGSLATLDNQIDTSTGTVKLRANFDNK EGMLFPNQFVNTRLLVDVMRNATIVPTSAVLTGSIGQFVYVVKPDNTVTVRKVTVGPVDGERTSIVSGVTLGERVVTDGS DRLREGSKISIPADKPKGASGARGAGAASGASAASGAGGHRGGHRHGASQAAAPAAQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]
Homologues:
Organism=Escherichia coli, GI87082036, Length=374, Percent_Identity=44.6524064171123, Blast_Score=327, Evalue=1e-90, Organism=Escherichia coli, GI1789929, Length=358, Percent_Identity=28.7709497206704, Blast_Score=140, Evalue=2e-34, Organism=Escherichia coli, GI1789665, Length=315, Percent_Identity=32.3809523809524, Blast_Score=135, Evalue=4e-33, Organism=Escherichia coli, GI1786668, Length=326, Percent_Identity=32.2085889570552, Blast_Score=132, Evalue=4e-32, Organism=Escherichia coli, GI87081796, Length=341, Percent_Identity=26.6862170087977, Blast_Score=69, Evalue=5e-13, Organism=Escherichia coli, GI87081951, Length=205, Percent_Identity=27.3170731707317, Blast_Score=68, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022824 - InterPro: IPR006143 [H]
Pfam domain/function: PF00529 HlyD [H]
EC number: NA
Molecular weight: Translated: 47566; Mature: 47566
Theoretical pI: Translated: 10.27; Mature: 10.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDNEQKPTPPSKDSAPAAARRPRRTLLIGTVAVVVIGGLLWWHPWNRTPATGSSAQGAGA CCCCCCCCCCCCCCCCHHHCCCCEEEEHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCC SAAAGSHRGRGGPAAMANVPQPVQVAPVTQGEMPIVLSALGTVTPLANVTVKTQLSGYLQ CCCCCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCHHHHHHHHCCCCCEEEEEHHHHHHH SVSFQEGQIVKKGDVLAQIDPRPYQVALENAEGTHARDAALLATARLDLKRYQTLLSQDS HCCCCCCCEEECCCEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCH IASQTVDTQASLVKQYEGAVKTDQAAIDSAKLNLTYARITAPVSGRVGLRQVDPGNYVTP HHHHHHHHHHHHHHHHCCCCCCCHHHHCCEEEEEEEEEEECCCCCCCCEEEECCCCEECC GDTNGIVVIMQLQPMSVIFTTSEDNLPQILKQVNAGQKLSVTAYNRNNTVPLETGSLATL CCCCCEEEEEEECCEEEEEECCCCCHHHHHHHHCCCCEEEEEEECCCCEEEECCCCEEEE DNQIDTSTGTVKLRANFDNKEGMLFPNQFVNTRLLVDVMRNATIVPTSAVLTGSIGQFVY CCCCCCCCCEEEEEECCCCCCCEECCHHHHHHHHHHHHHHCCEECCCHHHEECCCCCEEE VVKPDNTVTVRKVTVGPVDGERTSIVSGVTLGERVVTDGSDRLREGSKISIPADKPKGAS EECCCCEEEEEEEEECCCCCCCCEEEECCCCCCEEECCCHHHHCCCCEEECCCCCCCCCC GARGAGAASGASAASGAGGHRGGHRHGASQAAAPAAQ CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MDNEQKPTPPSKDSAPAAARRPRRTLLIGTVAVVVIGGLLWWHPWNRTPATGSSAQGAGA CCCCCCCCCCCCCCCCHHHCCCCEEEEHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCC SAAAGSHRGRGGPAAMANVPQPVQVAPVTQGEMPIVLSALGTVTPLANVTVKTQLSGYLQ CCCCCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCHHHHHHHHCCCCCEEEEEHHHHHHH SVSFQEGQIVKKGDVLAQIDPRPYQVALENAEGTHARDAALLATARLDLKRYQTLLSQDS HCCCCCCCEEECCCEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCH IASQTVDTQASLVKQYEGAVKTDQAAIDSAKLNLTYARITAPVSGRVGLRQVDPGNYVTP HHHHHHHHHHHHHHHHCCCCCCCHHHHCCEEEEEEEEEEECCCCCCCCEEEECCCCEECC GDTNGIVVIMQLQPMSVIFTTSEDNLPQILKQVNAGQKLSVTAYNRNNTVPLETGSLATL CCCCCEEEEEEECCEEEEEECCCCCHHHHHHHHCCCCEEEEEEECCCCEEEECCCCEEEE DNQIDTSTGTVKLRANFDNKEGMLFPNQFVNTRLLVDVMRNATIVPTSAVLTGSIGQFVY CCCCCCCCCEEEEEECCCCCCCEECCHHHHHHHHHHHHHHCCEECCCHHHEECCCCCEEE VVKPDNTVTVRKVTVGPVDGERTSIVSGVTLGERVVTDGSDRLREGSKISIPADKPKGAS EECCCCEEEEEEEEECCCCCCCCEEEECCCCCCEEECCCHHHHCCCCEEECCCCCCCCCC GARGAGAASGASAASGAGGHRGGHRHGASQAAAPAAQ CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA