| Definition | Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008060 |
| Length | 3,294,563 |
Click here to switch to the map view.
The map label for this gene is apaH [H]
Identifier: 107021946
GI number: 107021946
Start: 427722
End: 428561
Strand: Reverse
Name: apaH [H]
Synonym: Bcen_0388
Alternate gene names: 107021946
Gene position: 428561-427722 (Counterclockwise)
Preceding gene: 107021967
Following gene: 107021937
Centisome position: 13.01
GC content: 69.64
Gene sequence:
>840_bases ATGACTTCCCCCCCCATCGCCATCGGCGACATCCAAGGCTGTCACATCGCTTTCCAGGCGCTGTACGAAAAGCTTTCGCC CCCCACCGACACGCCCGTCTGGATCGCCGGCGACGTCGTCAACCGCGGCCCCGGCTCCCTCGCCGCGCTGCGCGCGGTCG TCGATCTCGGCCCGCGCGCGACCGTCGTGCTCGGCAATCACGACCTCCACCTGCTCGCGGTCTCCGCCGGGCTGCGCACC GAGCGCCCGGGCGACACGATCGGCGAGATCCTCGACGCGCCCGACGCCGACGCGCTGCTCGACTGGGTCCGCCATCGCCC GTTCGTGCATGTCGAAGACGGAAAGTTGCTCGTACACGCCGGCGTGTTGCCGCAATGGGACGCCACGCTCGCGCTCGAAC TCGCGGACGAGCTCCAGCGCGCGCTGCGTGCCCCCGATTGGCGCGACACGCTGCAAGGCCTGTACGGCAACGAGCCGAAT CAATGGACGCCGAACCTGAAAAAACGCGACCGGATGCGCGTCGCATTCAACGCGTTCACGCGCCTGCGCTTCTGCACGCC CGACGGCGCGATGGAATTCAAGGCGAACGGCGGCCCCGACAGCGCGCCGCCCGGCTACCTGCCGTGGTTCGACGTGCCGG GGCGCCGCACCGAGGACGTGACGGTCGTGTTCGGGCACTGGGCCGCGCTCGGCCTGATGTTGCGCGACAACCTCGTCGCG CTCGATTCAGGCTGCGTATGGGGAAATCAGTTGTCGGCCGTGCGGCTCACGGCCGATCCGGCGCAGCGCACGGTCACGCA GGTGCAGTGCGAAGCGTGCCGTTCGCCGGGCGGCGAATGA
Upstream 100 bases:
>100_bases TTGCCAAATCAACGCACGGTTGCGGAACACAAATTGCGCAACACTGCAGTGACTGGATAATTTTTCCCGTGTTCTCGATA CTCGCGAAATCCCCTGCCCC
Downstream 100 bases:
>100_bases CGGCACACTGATTCGCCCGCCCCGGCCGGCCGCGCATCAGCCCTCGCGCCCCGGCACCGGCGCATCGGCTGCCGCGTCGC CCGTCGCACCGGCGCCGAGC
Product: diadenosine tetraphosphatase
Products: NA
Alternate protein names: Ap4A hydrolase; Diadenosine 5',5'''-P1,P4-tetraphosphate pyrophosphohydrolase; Diadenosine tetraphosphatase [H]
Number of amino acids: Translated: 279; Mature: 278
Protein sequence:
>279_residues MTSPPIAIGDIQGCHIAFQALYEKLSPPTDTPVWIAGDVVNRGPGSLAALRAVVDLGPRATVVLGNHDLHLLAVSAGLRT ERPGDTIGEILDAPDADALLDWVRHRPFVHVEDGKLLVHAGVLPQWDATLALELADELQRALRAPDWRDTLQGLYGNEPN QWTPNLKKRDRMRVAFNAFTRLRFCTPDGAMEFKANGGPDSAPPGYLPWFDVPGRRTEDVTVVFGHWAALGLMLRDNLVA LDSGCVWGNQLSAVRLTADPAQRTVTQVQCEACRSPGGE
Sequences:
>Translated_279_residues MTSPPIAIGDIQGCHIAFQALYEKLSPPTDTPVWIAGDVVNRGPGSLAALRAVVDLGPRATVVLGNHDLHLLAVSAGLRT ERPGDTIGEILDAPDADALLDWVRHRPFVHVEDGKLLVHAGVLPQWDATLALELADELQRALRAPDWRDTLQGLYGNEPN QWTPNLKKRDRMRVAFNAFTRLRFCTPDGAMEFKANGGPDSAPPGYLPWFDVPGRRTEDVTVVFGHWAALGLMLRDNLVA LDSGCVWGNQLSAVRLTADPAQRTVTQVQCEACRSPGGE >Mature_278_residues TSPPIAIGDIQGCHIAFQALYEKLSPPTDTPVWIAGDVVNRGPGSLAALRAVVDLGPRATVVLGNHDLHLLAVSAGLRTE RPGDTIGEILDAPDADALLDWVRHRPFVHVEDGKLLVHAGVLPQWDATLALELADELQRALRAPDWRDTLQGLYGNEPNQ WTPNLKKRDRMRVAFNAFTRLRFCTPDGAMEFKANGGPDSAPPGYLPWFDVPGRRTEDVTVVFGHWAALGLMLRDNLVAL DSGCVWGNQLSAVRLTADPAQRTVTQVQCEACRSPGGE
Specific function: Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP [H]
COG id: COG0639
COG function: function code T; Diadenosine tetraphosphatase and related serine/threonine protein phosphatases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Ap4A hydrolase family [H]
Homologues:
Organism=Escherichia coli, GI1786234, Length=253, Percent_Identity=44.2687747035573, Blast_Score=223, Evalue=1e-59,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004617 - InterPro: IPR004843 [H]
Pfam domain/function: PF00149 Metallophos [H]
EC number: =3.6.1.41 [H]
Molecular weight: Translated: 30359; Mature: 30228
Theoretical pI: Translated: 5.33; Mature: 5.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSPPIAIGDIQGCHIAFQALYEKLSPPTDTPVWIAGDVVNRGPGSLAALRAVVDLGPRA CCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCE TVVLGNHDLHLLAVSAGLRTERPGDTIGEILDAPDADALLDWVRHRPFVHVEDGKLLVHA EEEECCCCEEEEEEECCCCCCCCCCHHHHHHCCCCHHHHHHHHHCCCEEEEECCEEEEEE GVLPQWDATLALELADELQRALRAPDWRDTLQGLYGNEPNQWTPNLKKRDRMRVAFNAFT CCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHEEHHH RLRFCTPDGAMEFKANGGPDSAPPGYLPWFDVPGRRTEDVTVVFGHWAALGLMLRDNLVA EEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHCCEEE LDSGCVWGNQLSAVRLTADPAQRTVTQVQCEACRSPGGE EECCCEECCCCCEEEEECCHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure TSPPIAIGDIQGCHIAFQALYEKLSPPTDTPVWIAGDVVNRGPGSLAALRAVVDLGPRA CCCCEEEECCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCE TVVLGNHDLHLLAVSAGLRTERPGDTIGEILDAPDADALLDWVRHRPFVHVEDGKLLVHA EEEECCCCEEEEEEECCCCCCCCCCHHHHHHCCCCHHHHHHHHHCCCEEEEECCEEEEEE GVLPQWDATLALELADELQRALRAPDWRDTLQGLYGNEPNQWTPNLKKRDRMRVAFNAFT CCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHEEHHH RLRFCTPDGAMEFKANGGPDSAPPGYLPWFDVPGRRTEDVTVVFGHWAALGLMLRDNLVA EEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHCCEEE LDSGCVWGNQLSAVRLTADPAQRTVTQVQCEACRSPGGE EECCCEECCCCCEEEEECCHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA