| Definition | Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008060 |
| Length | 3,294,563 |
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The map label for this gene is 107021891
Identifier: 107021891
GI number: 107021891
Start: 367127
End: 367930
Strand: Reverse
Name: 107021891
Synonym: Bcen_0333
Alternate gene names: NA
Gene position: 367930-367127 (Counterclockwise)
Preceding gene: 107021897
Following gene: 107021888
Centisome position: 11.17
GC content: 67.66
Gene sequence:
>804_bases ATGATTCCGCCTACCATCCCCGAGCTGGTCAGCCGTGCCGGGCAACTGCCGTATCTGCGGGAACACCTCGCGCTTGCCGA AGGCGGCACCGCGTGCGCGAATCTGCCCGAGCGCACGCTCGCCAGCGCGTACGAGCCGATCTACGACGTGACGATGCCCG GCGCGCCGCAATCGACGTCGTTCGCCGACGCGATCGAGCGCTACGGCGACGAGCTCGGCTTCCAGGCGGTCACGCTCGTC ACCGGCGCGCAGCACGACCCGGTCGACGCGGCCGTCGACGACCAGACGCTGGTCGCGATCGACCGCCTGTCGCGCGCGCT GCACGCGATCAATTTCTTCGGGGCGCAGCGTCACGGGCTGCTGTTCCTGCGCGTGCACGAGCGGCTGCTCAAGAGCGTGA AGTACGACCACGGCAAGCATTTCTCGTCGGTACTGCAGCGCTTCGGGCTGCCGCCCGAGCGGATCGTGATCGAACTGCCG GCGGTCGCGGTCGCCCACAAGACATTCCTCGGCTACCTGACGCGCAGCTATCAGCATCACGGCTTCAAGGTCGCCGACAA GCTGCCCGATCCGGGCCGCATCCTCGCGGTCGAATCGGACATGGCGCGCCCCGACTACATCAAGATGGATGCAGGCATCG CGTTGCGCGACGGGATGGTCAAGGCGCTCGTCGCCTACGCGCAGCGCGTGCGGATTCCGCTGATCTTCGACGGCGTGGTC GACGAGACGCAGTGCGAGTTGCTGCGCCAGCACGACGTGCGGTTCATGCAGGGGCCGGTGTTCGCGAAGGTGGTGACGGC CTGA
Upstream 100 bases:
>100_bases ATAACCATATGAGTGAAACGCCGAGCCGAGCGCGGCGCGCGCTGCTAATATCAAGTCAACGAGGCGGCCCTTTCGGCCGC CATTTTTCCTTCTCACGCCG
Downstream 100 bases:
>100_bases GCGATCGGCGGGAGAAGCGCGCGCGAAGCGCGGCGCGCCGGATGGCGGATGCCGGTGTCGGGTTGCCTCGGGAATCGGGT TTCAGCACACGCGTCGCTCG
Product: diguanylate phosphodiesterase
Products: NA
Alternate protein names: EAL Domain-Containing Protein; Signalling Protein EAL; Sensory Transduction Protein Kinase; EAL Domain Protein; Signaling Protein; Signal Transduction Protein Eal Domain
Number of amino acids: Translated: 267; Mature: 267
Protein sequence:
>267_residues MIPPTIPELVSRAGQLPYLREHLALAEGGTACANLPERTLASAYEPIYDVTMPGAPQSTSFADAIERYGDELGFQAVTLV TGAQHDPVDAAVDDQTLVAIDRLSRALHAINFFGAQRHGLLFLRVHERLLKSVKYDHGKHFSSVLQRFGLPPERIVIELP AVAVAHKTFLGYLTRSYQHHGFKVADKLPDPGRILAVESDMARPDYIKMDAGIALRDGMVKALVAYAQRVRIPLIFDGVV DETQCELLRQHDVRFMQGPVFAKVVTA
Sequences:
>Translated_267_residues MIPPTIPELVSRAGQLPYLREHLALAEGGTACANLPERTLASAYEPIYDVTMPGAPQSTSFADAIERYGDELGFQAVTLV TGAQHDPVDAAVDDQTLVAIDRLSRALHAINFFGAQRHGLLFLRVHERLLKSVKYDHGKHFSSVLQRFGLPPERIVIELP AVAVAHKTFLGYLTRSYQHHGFKVADKLPDPGRILAVESDMARPDYIKMDAGIALRDGMVKALVAYAQRVRIPLIFDGVV DETQCELLRQHDVRFMQGPVFAKVVTA >Mature_267_residues MIPPTIPELVSRAGQLPYLREHLALAEGGTACANLPERTLASAYEPIYDVTMPGAPQSTSFADAIERYGDELGFQAVTLV TGAQHDPVDAAVDDQTLVAIDRLSRALHAINFFGAQRHGLLFLRVHERLLKSVKYDHGKHFSSVLQRFGLPPERIVIELP AVAVAHKTFLGYLTRSYQHHGFKVADKLPDPGRILAVESDMARPDYIKMDAGIALRDGMVKALVAYAQRVRIPLIFDGVV DETQCELLRQHDVRFMQGPVFAKVVTA
Specific function: Unknown
COG id: COG2200
COG function: function code T; FOG: EAL domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29489; Mature: 29489
Theoretical pI: Translated: 6.92; Mature: 6.92
Prosite motif: PS50883 EAL
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIPPTIPELVSRAGQLPYLREHLALAEGGTACANLPERTLASAYEPIYDVTMPGAPQSTS CCCCCHHHHHHHCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHCCHHCCCCCCCCCCCH FADAIERYGDELGFQAVTLVTGAQHDPVDAAVDDQTLVAIDRLSRALHAINFFGAQRHGL HHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCE LFLRVHERLLKSVKYDHGKHFSSVLQRFGLPPERIVIELPAVAVAHKTFLGYLTRSYQHH EHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHEEEECCHHHHHHHHHHHHHHHHHHCC GFKVADKLPDPGRILAVESDMARPDYIKMDAGIALRDGMVKALVAYAQRVRIPLIFDGVV CEEECCCCCCCCEEEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCEEECCCC DETQCELLRQHDVRFMQGPVFAKVVTA CHHHHHHHHHHCHHHHCCCHHEEEECC >Mature Secondary Structure MIPPTIPELVSRAGQLPYLREHLALAEGGTACANLPERTLASAYEPIYDVTMPGAPQSTS CCCCCHHHHHHHCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHCCHHCCCCCCCCCCCH FADAIERYGDELGFQAVTLVTGAQHDPVDAAVDDQTLVAIDRLSRALHAINFFGAQRHGL HHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCE LFLRVHERLLKSVKYDHGKHFSSVLQRFGLPPERIVIELPAVAVAHKTFLGYLTRSYQHH EHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHEEEECCHHHHHHHHHHHHHHHHHHCC GFKVADKLPDPGRILAVESDMARPDYIKMDAGIALRDGMVKALVAYAQRVRIPLIFDGVV CEEECCCCCCCCEEEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCEEECCCC DETQCELLRQHDVRFMQGPVFAKVVTA CHHHHHHHHHHCHHHHCCCHHEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA