| Definition | Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008060 |
| Length | 3,294,563 |
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The map label for this gene is prc [C]
Identifier: 107021794
GI number: 107021794
Start: 248504
End: 249913
Strand: Reverse
Name: prc [C]
Synonym: Bcen_0234
Alternate gene names: 107021794
Gene position: 249913-248504 (Counterclockwise)
Preceding gene: 107021795
Following gene: 107021789
Centisome position: 7.59
GC content: 71.49
Gene sequence:
>1410_bases GTGCCCGCCGCCCAACCGCCGTCACCCTGCCCGCCCGACTGGGAACCGCAGCTCTGCGAACTCAAAGCGGCCGTCGAAGT GCTGAAGCGGCAACACCTGACCGACGTCGACATCGGCGCGCTGCTCGACGCCGCGACCCACGAAGGCATCAAGACGCTGC CGTACGCGCGCTTCTTCAACGCGAAGGAGGAGCAGGAACGACGCGACGACGAGCGGCGCGCACGCGACGGCACACCGGGC ATCGGCATCGTGTTCGAGACGCGGCCCGACGGGCTGCACATCATCGACGTGATTCCCGATGCGCCGGCCGAAAAGGCCGG TGTGCGGCCCGACGACCTCGTCGTCGCGATGAACGACAGGAGCGTCGTCGGCATCGACGGCGGCGAGTTGATGAAGCTCG CGAAGGGCGACGCGGGCGTGCCGCTGAAGCTCACGGTGCAGCGCGGCCCGCAGCATGCGGTGCTGACCTTCGCGCCCGTG CGCGCGATCGTCAAGCCGCATCCGGCGACCGCGAAGCGGCTCGACGGCGACATCCTGTACACGCGGCTGTCGAGCTTTCC GGAGTCGGCGGTCGGCGACTATATCGACGCGGTGCAGGCCACGCGCCGCGCGGGCCCGCCGGTGAAGCAGATGATCCTCG ACCTGCGCATCAACGGCGGCGGCGCGCTGAATGCGGCGATCGGCATCACCGCGCTGTTCGCGGGACGCGACCGAACCGCG ATGGTGACGGTCGAGCGCGACGGCACGCACCGCCGCCGCTACACGACCAACTGGCCCGACTACGAACTGCCCGTCATGCA CGGCCAGGACCCGCTCGCGCCGCTACAGGCCGACGACTGGTGGCGCACCGTGCCGCTCATCGTGCTCGTCGACGGCCAGA GCGCGTCGGCCGCCGAAGCGACCGCGGCGGCGCTGAAGGATCTCGGCCGCGCGACACTGCTTGGCATGCCGACCTACGGG AAAGGGCTCGCGCAAACGGGCGTCGACCTGATCGACGGCACGCGCCTGAATTTCACGTTCGCGCGCAACCTGCGGCCGAA CGGGTGCCCGATGGATGGTTACGGCGTCGTGCCGGACCGGCTCGTGCCGCCGCGCCGCGACGCGGACGTCGACGGCGTGC TGCTGTGGTACCGGGAAGTCGATCTCGCCCGCGCGCCCTATGCGGACCGGCAGGCGCCCGACCCGTTCGCGCAGGTGCGC AAGGCCCGCCAGAAGCTGCGCGAAGCGCGCGTGCGCGCGAAGGTCGATACGGCGAGGAGCGCGGCGCTGCCGCAGCGCGC ATTCGGCACGGCGGCCGACTGGCAGCTCCGTCAGGCGCTCAATGCCCTCGCCGGCCGCCCGGTGCAGACCATCGCCGCGC CCGCGCAACTGATGCCGGCGCAACCGGTCTGCGAGCGCGGCGGCAACTGA
Upstream 100 bases:
>100_bases CGCCGCCTGCGCAGCCGCCGCAGCCGCGTTCCCGTATGCGTCGCTCGTCGGTGCGCAACCGGCATCCGCGCCGCCTGCCG TTGCACCTGCCCCCGCTTCG
Downstream 100 bases:
>100_bases CGCGCCGGCCGCCCTCTTTCACCGAAACCCGAACCGCCGCCGCAGCACGACCAGCGCCGCGAGGCTCAGCACGGCCGCGA ACATCAGATAGAAGCTCGGC
Product: peptidase S41
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 469; Mature: 468
Protein sequence:
>469_residues MPAAQPPSPCPPDWEPQLCELKAAVEVLKRQHLTDVDIGALLDAATHEGIKTLPYARFFNAKEEQERRDDERRARDGTPG IGIVFETRPDGLHIIDVIPDAPAEKAGVRPDDLVVAMNDRSVVGIDGGELMKLAKGDAGVPLKLTVQRGPQHAVLTFAPV RAIVKPHPATAKRLDGDILYTRLSSFPESAVGDYIDAVQATRRAGPPVKQMILDLRINGGGALNAAIGITALFAGRDRTA MVTVERDGTHRRRYTTNWPDYELPVMHGQDPLAPLQADDWWRTVPLIVLVDGQSASAAEATAAALKDLGRATLLGMPTYG KGLAQTGVDLIDGTRLNFTFARNLRPNGCPMDGYGVVPDRLVPPRRDADVDGVLLWYREVDLARAPYADRQAPDPFAQVR KARQKLREARVRAKVDTARSAALPQRAFGTAADWQLRQALNALAGRPVQTIAAPAQLMPAQPVCERGGN
Sequences:
>Translated_469_residues MPAAQPPSPCPPDWEPQLCELKAAVEVLKRQHLTDVDIGALLDAATHEGIKTLPYARFFNAKEEQERRDDERRARDGTPG IGIVFETRPDGLHIIDVIPDAPAEKAGVRPDDLVVAMNDRSVVGIDGGELMKLAKGDAGVPLKLTVQRGPQHAVLTFAPV RAIVKPHPATAKRLDGDILYTRLSSFPESAVGDYIDAVQATRRAGPPVKQMILDLRINGGGALNAAIGITALFAGRDRTA MVTVERDGTHRRRYTTNWPDYELPVMHGQDPLAPLQADDWWRTVPLIVLVDGQSASAAEATAAALKDLGRATLLGMPTYG KGLAQTGVDLIDGTRLNFTFARNLRPNGCPMDGYGVVPDRLVPPRRDADVDGVLLWYREVDLARAPYADRQAPDPFAQVR KARQKLREARVRAKVDTARSAALPQRAFGTAADWQLRQALNALAGRPVQTIAAPAQLMPAQPVCERGGN >Mature_468_residues PAAQPPSPCPPDWEPQLCELKAAVEVLKRQHLTDVDIGALLDAATHEGIKTLPYARFFNAKEEQERRDDERRARDGTPGI GIVFETRPDGLHIIDVIPDAPAEKAGVRPDDLVVAMNDRSVVGIDGGELMKLAKGDAGVPLKLTVQRGPQHAVLTFAPVR AIVKPHPATAKRLDGDILYTRLSSFPESAVGDYIDAVQATRRAGPPVKQMILDLRINGGGALNAAIGITALFAGRDRTAM VTVERDGTHRRRYTTNWPDYELPVMHGQDPLAPLQADDWWRTVPLIVLVDGQSASAAEATAAALKDLGRATLLGMPTYGK GLAQTGVDLIDGTRLNFTFARNLRPNGCPMDGYGVVPDRLVPPRRDADVDGVLLWYREVDLARAPYADRQAPDPFAQVRK ARQKLREARVRAKVDTARSAALPQRAFGTAADWQLRQALNALAGRPVQTIAAPAQLMPAQPVCERGGN
Specific function: Involved In The Cleavage Of A C-Terminal Peptide Of 11 Residues From The Precursor Form Of Penicillin-Binding Protein 3 (Pbp3). May Be Involved In Protection Of The Bacterium From Thermal And Osmotic Stresses. [C]
COG id: COG0793
COG function: function code M; Periplasmic protease
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PDZ (DHR) domain [H]
Homologues:
Organism=Escherichia coli, GI1788134, Length=313, Percent_Identity=28.7539936102236, Blast_Score=71, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001478 - InterPro: IPR005151 - InterPro: IPR004447 - InterPro: IPR002477 [H]
Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41; PF01471 PG_binding_1 [H]
EC number: 3.4.21.102 [C]
Molecular weight: Translated: 50895; Mature: 50763
Theoretical pI: Translated: 8.31; Mature: 8.31
Prosite motif: PS50106 PDZ
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPAAQPPSPCPPDWEPQLCELKAAVEVLKRQHLTDVDIGALLDAATHEGIKTLPYARFFN CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHCCHHHHCC AKEEQERRDDERRARDGTPGIGIVFETRPDGLHIIDVIPDAPAEKAGVRPDDLVVAMNDR CHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEECCCCCHHHCCCCCCCEEEEECCC SVVGIDGGELMKLAKGDAGVPLKLTVQRGPQHAVLTFAPVRAIVKPHPATAKRLDGDILY EEEECCCHHHHHHHCCCCCCCEEEEECCCCCEEEEEEHHHHHHHCCCCCHHHHCCCHHHH TRLSSFPESAVGDYIDAVQATRRAGPPVKQMILDLRINGGGALNAAIGITALFAGRDRTA HHHHHCCHHHHHHHHHHHHHHHHCCCCHHHEEEEEEECCCCCCHHHHHEEEEEECCCCEE MVTVERDGTHRRRYTTNWPDYELPVMHGQDPLAPLQADDWWRTVPLIVLVDGQSASAAEA EEEEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEEEEEEECCCCCCHHHH TAAALKDLGRATLLGMPTYGKGLAQTGVDLIDGTRLNFTFARNLRPNGCPMDGYGVVPDR HHHHHHHCCCEEEECCCCCCCCHHHCCCHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCC LVPPRRDADVDGVLLWYREVDLARAPYADRQAPDPFAQVRKARQKLREARVRAKVDTARS CCCCCCCCCCCEEEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH AALPQRAFGTAADWQLRQALNALAGRPVQTIAAPAQLMPAQPVCERGGN HCCCHHHCCCCHHHHHHHHHHHHCCCCHHHHHCCHHHCCCCHHHHCCCC >Mature Secondary Structure PAAQPPSPCPPDWEPQLCELKAAVEVLKRQHLTDVDIGALLDAATHEGIKTLPYARFFN CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHCCHHHHCC AKEEQERRDDERRARDGTPGIGIVFETRPDGLHIIDVIPDAPAEKAGVRPDDLVVAMNDR CHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEECCCCCHHHCCCCCCCEEEEECCC SVVGIDGGELMKLAKGDAGVPLKLTVQRGPQHAVLTFAPVRAIVKPHPATAKRLDGDILY EEEECCCHHHHHHHCCCCCCCEEEEECCCCCEEEEEEHHHHHHHCCCCCHHHHCCCHHHH TRLSSFPESAVGDYIDAVQATRRAGPPVKQMILDLRINGGGALNAAIGITALFAGRDRTA HHHHHCCHHHHHHHHHHHHHHHHCCCCHHHEEEEEEECCCCCCHHHHHEEEEEECCCCEE MVTVERDGTHRRRYTTNWPDYELPVMHGQDPLAPLQADDWWRTVPLIVLVDGQSASAAEA EEEEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEEEEEEECCCCCCHHHH TAAALKDLGRATLLGMPTYGKGLAQTGVDLIDGTRLNFTFARNLRPNGCPMDGYGVVPDR HHHHHHHCCCEEEECCCCCCCCHHHCCCHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCC LVPPRRDADVDGVLLWYREVDLARAPYADRQAPDPFAQVRKARQKLREARVRAKVDTARS CCCCCCCCCCCEEEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH AALPQRAFGTAADWQLRQALNALAGRPVQTIAAPAQLMPAQPVCERGGN HCCCHHHCCCCHHHHHHHHHHHHCCCCHHHHHCCHHHCCCCHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: Cleavage of the C-terminal peptide from the precursor form of penicillin-binding protein 3 [C]
General reaction: Hydrolase; Acting on peptide bonds (Peptidases) [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA