| Definition | Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008060 |
| Length | 3,294,563 |
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The map label for this gene is 107021679
Identifier: 107021679
GI number: 107021679
Start: 124151
End: 125551
Strand: Reverse
Name: 107021679
Synonym: Bcen_0119
Alternate gene names: NA
Gene position: 125551-124151 (Counterclockwise)
Preceding gene: 107021680
Following gene: 107021678
Centisome position: 3.81
GC content: 70.38
Gene sequence:
>1401_bases ATGCTTCTTGCGACGCGCTGCCCTCATTGCGAAACCGTCTTCCGGCTGCAGCAGGAACAGCTCTCGCTGCATCAGGGGCT CGTGCGCTGCGGGCATTGCCACGAAGTCTTCAACGCCGCCGAATCGCTCGTTCCCGAGTACGCGCAGCAGCCCGAACCGG CATTGACCGAACCGGCTGCCGCGCCGGATAGCAGCGACACGCACCAGCAGGCCGCACCGGCCCGGTTGTTCGCCACCGAC ACGCCGCCCGAATTGCCGACCGGCACCGATTACAAGCCGGAAGGCTGGGACATGTGGGCGCCGTGGCTCGACGCCGGCGT CGATCCGTCGCTGCAGCACAGCGTCGAGACCGTGCGCACCGAGCCGCTGATACCGCTCGCGCTCCCGTCCACGGAAGCCG GCGTCGTTCATCTGTCGGGTACGCCCGCGCCGTTCGCGTCCTCTCCGGCCGAACTCGATTCGTCGACTGCCGTCGAGCAA CCGGCGGAACTACATTCGCCGCAGGCGCAACACGCACCGCACGAAACCGAAGAAACCGCGCCGTCGCCCGCGCCGCTCGA GCGCGACCCGCGCGAGCCTCGCTTCGTCGCCCACCTTCCGTCGGAAACCGAAACCGCCGCCGAGCCGGCCGAACCCGTCG TCCCCACGCACTTCGCCGCGCCGGACGACGAACGCGCGCCGCGCGAACCGCGTTTTGCGTTCACGCCCGCACCGGCCGTC ACCGAAGCCGAAACCGCATCGGAACCCGGCACCTTCGCCCGACACGACACGGCCCCGCCCGCAGCGGCAGCCGATGAACC GGTCGCGCAACCGGCCGTCCCGCCGGTCGTCCAACCGGCCGTCCCATTCCCCGCCGCACTGTCCGACGACGATCGTCCGC ACTTCGCCGTCACGCGCGAGACACGCGCGCCGCAGCGACGCGGGATGCTCGGCGGCTTTTTCGGCGGTCTCGTCGCGGCC GCGCTGGTCGGATTGCTCGCCGCGCAACTGGCGTGGTGGCAACGCGAAACGCTGATGATCTACTGGCCCGTCACGCAAGG CTGGTTCCGGCAGGCCTGCGCGCCGCTCGGCTGCACGGTCACGCCGCCGCGCGCGATCGACGGGCTGCGGCTCGACGCGA CCGACCTGCGCCAGCTCGATGGCCCGCGCGAGCTCGAACTGAAGGTGCCGCTGACGAACCGCTACCGCGTCGCGCTCGCG TATCCGTCGGTCGAACTCACGCTGCTCGACGACACCAATCACGTCACCGTGCGCCGCGTGCTCGCGCCGCGCGATTACGT ACGCCCGGGCACGCCGATCGACGCCGGGCTGCCGCCCGGCACGACGCAGACGATGGTGGTCCGCCTCGAAACGAACGGCA CGCCCGCCTCGAATTTCCGCGTCCAGATCTTCTATCCGTGA
Upstream 100 bases:
>100_bases GCGCGAACACGAAGGTTGGGTATGCCTTGCCGGAACCCGCCGCGAAAGCCATTAGAATAGCGCTGTCCTTCACTCTGGCC AGCAGGCCGCCCGGCTCGAC
Downstream 100 bases:
>100_bases CGCGTCGCGGCGCGCTTGCGCGCCCGTCTCAACCCGCGCGCCCGAGCGGCGCGCTATTTCGGAGCACGAACATGAGCAAA GTTACGCTGGGTGGCAACCC
Product: Zinc finger/thioredoxin
Products: NA
Alternate protein names: Zinc Finger/Thioredoxin Domain Protein; Zinc Finger/Thioredoxin; FHA Domain-Containing Protein
Number of amino acids: Translated: 466; Mature: 466
Protein sequence:
>466_residues MLLATRCPHCETVFRLQQEQLSLHQGLVRCGHCHEVFNAAESLVPEYAQQPEPALTEPAAAPDSSDTHQQAAPARLFATD TPPELPTGTDYKPEGWDMWAPWLDAGVDPSLQHSVETVRTEPLIPLALPSTEAGVVHLSGTPAPFASSPAELDSSTAVEQ PAELHSPQAQHAPHETEETAPSPAPLERDPREPRFVAHLPSETETAAEPAEPVVPTHFAAPDDERAPREPRFAFTPAPAV TEAETASEPGTFARHDTAPPAAAADEPVAQPAVPPVVQPAVPFPAALSDDDRPHFAVTRETRAPQRRGMLGGFFGGLVAA ALVGLLAAQLAWWQRETLMIYWPVTQGWFRQACAPLGCTVTPPRAIDGLRLDATDLRQLDGPRELELKVPLTNRYRVALA YPSVELTLLDDTNHVTVRRVLAPRDYVRPGTPIDAGLPPGTTQTMVVRLETNGTPASNFRVQIFYP
Sequences:
>Translated_466_residues MLLATRCPHCETVFRLQQEQLSLHQGLVRCGHCHEVFNAAESLVPEYAQQPEPALTEPAAAPDSSDTHQQAAPARLFATD TPPELPTGTDYKPEGWDMWAPWLDAGVDPSLQHSVETVRTEPLIPLALPSTEAGVVHLSGTPAPFASSPAELDSSTAVEQ PAELHSPQAQHAPHETEETAPSPAPLERDPREPRFVAHLPSETETAAEPAEPVVPTHFAAPDDERAPREPRFAFTPAPAV TEAETASEPGTFARHDTAPPAAAADEPVAQPAVPPVVQPAVPFPAALSDDDRPHFAVTRETRAPQRRGMLGGFFGGLVAA ALVGLLAAQLAWWQRETLMIYWPVTQGWFRQACAPLGCTVTPPRAIDGLRLDATDLRQLDGPRELELKVPLTNRYRVALA YPSVELTLLDDTNHVTVRRVLAPRDYVRPGTPIDAGLPPGTTQTMVVRLETNGTPASNFRVQIFYP >Mature_466_residues MLLATRCPHCETVFRLQQEQLSLHQGLVRCGHCHEVFNAAESLVPEYAQQPEPALTEPAAAPDSSDTHQQAAPARLFATD TPPELPTGTDYKPEGWDMWAPWLDAGVDPSLQHSVETVRTEPLIPLALPSTEAGVVHLSGTPAPFASSPAELDSSTAVEQ PAELHSPQAQHAPHETEETAPSPAPLERDPREPRFVAHLPSETETAAEPAEPVVPTHFAAPDDERAPREPRFAFTPAPAV TEAETASEPGTFARHDTAPPAAAADEPVAQPAVPPVVQPAVPFPAALSDDDRPHFAVTRETRAPQRRGMLGGFFGGLVAA ALVGLLAAQLAWWQRETLMIYWPVTQGWFRQACAPLGCTVTPPRAIDGLRLDATDLRQLDGPRELELKVPLTNRYRVALA YPSVELTLLDDTNHVTVRRVLAPRDYVRPGTPIDAGLPPGTTQTMVVRLETNGTPASNFRVQIFYP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50446; Mature: 50446
Theoretical pI: Translated: 4.62; Mature: 4.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLLATRCPHCETVFRLQQEQLSLHQGLVRCGHCHEVFNAAESLVPEYAQQPEPALTEPAA CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC APDSSDTHQQAAPARLFATDTPPELPTGTDYKPEGWDMWAPWLDAGVDPSLQHSVETVRT CCCCCCCHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHC EPLIPLALPSTEAGVVHLSGTPAPFASSPAELDSSTAVEQPAELHSPQAQHAPHETEETA CCCEEEECCCCCCCEEEECCCCCCCCCCCHHCCCCHHHCCCHHHCCCCHHCCCCCCHHCC PSPAPLERDPREPRFVAHLPSETETAAEPAEPVVPTHFAAPDDERAPREPRFAFTPAPAV CCCCCCCCCCCCCEEEEECCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC TEAETASEPGTFARHDTAPPAAAADEPVAQPAVPPVVQPAVPFPAALSDDDRPHFAVTRE CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECC TRAPQRRGMLGGFFGGLVAAALVGLLAAQLAWWQRETLMIYWPVTQGWFRQACAPLGCTV CCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCCCC TPPRAIDGLRLDATDLRQLDGPRELELKVPLTNRYRVALAYPSVELTLLDDTNHVTVRRV CCCHHCCCCEECHHHHHHCCCCCEEEEECCCCCCEEEEEECCCEEEEEECCCCCEEEEEE LAPRDYVRPGTPIDAGLPPGTTQTMVVRLETNGTPASNFRVQIFYP CCCHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECC >Mature Secondary Structure MLLATRCPHCETVFRLQQEQLSLHQGLVRCGHCHEVFNAAESLVPEYAQQPEPALTEPAA CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC APDSSDTHQQAAPARLFATDTPPELPTGTDYKPEGWDMWAPWLDAGVDPSLQHSVETVRT CCCCCCCHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHC EPLIPLALPSTEAGVVHLSGTPAPFASSPAELDSSTAVEQPAELHSPQAQHAPHETEETA CCCEEEECCCCCCCEEEECCCCCCCCCCCHHCCCCHHHCCCHHHCCCCHHCCCCCCHHCC PSPAPLERDPREPRFVAHLPSETETAAEPAEPVVPTHFAAPDDERAPREPRFAFTPAPAV CCCCCCCCCCCCCEEEEECCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC TEAETASEPGTFARHDTAPPAAAADEPVAQPAVPPVVQPAVPFPAALSDDDRPHFAVTRE CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECC TRAPQRRGMLGGFFGGLVAAALVGLLAAQLAWWQRETLMIYWPVTQGWFRQACAPLGCTV CCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCCCC TPPRAIDGLRLDATDLRQLDGPRELELKVPLTNRYRVALAYPSVELTLLDDTNHVTVRRV CCCHHCCCCEECHHHHHHCCCCCEEEEECCCCCCEEEEEECCCEEEEEECCCCCEEEEEE LAPRDYVRPGTPIDAGLPPGTTQTMVVRLETNGTPASNFRVQIFYP CCCHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA