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The map label for this gene is ygdQ [C]

Identifier: 104779412

GI number: 104779412

Start: 99189

End: 99959

Strand: Reverse

Name: ygdQ [C]

Synonym: PSEEN0103

Alternate gene names: 104779412

Gene position: 99959-99189 (Counterclockwise)

Preceding gene: 104779413

Following gene: 104779411

Centisome position: 1.7

GC content: 60.05

Gene sequence:

>771_bases
ATGGAATGGCTGACCAGCCCGGAAATCTGGGTTGCCTTTTTCACCCTCACGGCCCTTGAGATCGTGCTCGGGATCGACAA
CATCATCATGATCTCGATCCTGGTCAGCCGCATGCCCAAGCACATGCAACCGCGCACGCGGATCTTCGGCCTGGCCCTGG
CCATGGTCACGCGGATCATGCTGCTGCTGTCGATCACCTGGGTCATGCGCCTGACCGACGACCTGTTCCACGTGCTGGGC
CAGGGCATCTCCGGGCGCGACCTGATCCTGTTCTTCGGTGGCCTGTTCCTGCTGTGGAAGAGCTCCCAGGAGATCTACCA
CGGCCTGGAAGGCGAGGACGAGAGCCCGGACGAGCCGAAAGGCGCGGGCGGCAAGTTCTTCTACACCATCATCCAGATCG
CCATCATCGACATCGTGTTCTCCCTGGACTCGGTGATCACCGCCGTGGGCATGGTCTCCCACGTACCGGTGATGATCGCC
GCGATCATCGTCGCGGTGCTGGTGATGATGCTCTGCGCCGGCACCATCAGCGACTTCATCGACAAGCACCCTTCGCTGAA
GATGCTTGCGCTTTCGTTCCTGATCGTCGTCGGTACCGTGCTGATCGCCGAATCGTTCGATGTGCATGTACCAAAAGGCT
ATGTGTACTTCGCCATGGCCTTCTCGCTGGCGGTGGAGGCCATCAACATCCGTATGCGCACGGCGATGGCGCGTAAAAAG
GGCAAGGAGCATGAGCCGGTGAAACTGCGCAAGGATATTCCCGGGCAGTAA

Upstream 100 bases:

>100_bases
GACTTTCCCGCTGTTCAGCAGTCTGTAATACAAGCGCATCATCCAACCGCAAAGCGCCCGCCATCAGGGCGCTTTGCCTT
TACTGTTCGAAGGAATACAC

Downstream 100 bases:

>100_bases
GACCAGGTAGCGCTGCACGACAGAGGGCCCTTCGGGGCCCTCTGTCATTCGCGCCGCCATCTGTAGGAGCCAGCCTTGCT
GGCGAACGGCCCCTCCCAAG

Product: TerC family efflux transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MEWLTSPEIWVAFFTLTALEIVLGIDNIIMISILVSRMPKHMQPRTRIFGLALAMVTRIMLLLSITWVMRLTDDLFHVLG
QGISGRDLILFFGGLFLLWKSSQEIYHGLEGEDESPDEPKGAGGKFFYTIIQIAIIDIVFSLDSVITAVGMVSHVPVMIA
AIIVAVLVMMLCAGTISDFIDKHPSLKMLALSFLIVVGTVLIAESFDVHVPKGYVYFAMAFSLAVEAINIRMRTAMARKK
GKEHEPVKLRKDIPGQ

Sequences:

>Translated_256_residues
MEWLTSPEIWVAFFTLTALEIVLGIDNIIMISILVSRMPKHMQPRTRIFGLALAMVTRIMLLLSITWVMRLTDDLFHVLG
QGISGRDLILFFGGLFLLWKSSQEIYHGLEGEDESPDEPKGAGGKFFYTIIQIAIIDIVFSLDSVITAVGMVSHVPVMIA
AIIVAVLVMMLCAGTISDFIDKHPSLKMLALSFLIVVGTVLIAESFDVHVPKGYVYFAMAFSLAVEAINIRMRTAMARKK
GKEHEPVKLRKDIPGQ
>Mature_256_residues
MEWLTSPEIWVAFFTLTALEIVLGIDNIIMISILVSRMPKHMQPRTRIFGLALAMVTRIMLLLSITWVMRLTDDLFHVLG
QGISGRDLILFFGGLFLLWKSSQEIYHGLEGEDESPDEPKGAGGKFFYTIIQIAIIDIVFSLDSVITAVGMVSHVPVMIA
AIIVAVLVMMLCAGTISDFIDKHPSLKMLALSFLIVVGTVLIAESFDVHVPKGYVYFAMAFSLAVEAINIRMRTAMARKK
GKEHEPVKLRKDIPGQ

Specific function: Unknown

COG id: COG0861

COG function: function code P; Membrane protein TerC, possibly involved in tellurium resistance

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0053 family [H]

Homologues:

Organism=Escherichia coli, GI1789197, Length=228, Percent_Identity=57.0175438596491, Blast_Score=240, Evalue=5e-65,
Organism=Escherichia coli, GI1788119, Length=253, Percent_Identity=44.2687747035573, Blast_Score=223, Evalue=1e-59,
Organism=Escherichia coli, GI87082033, Length=230, Percent_Identity=46.0869565217391, Blast_Score=204, Evalue=4e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005496 [H]

Pfam domain/function: PF03741 TerC [H]

EC number: NA

Molecular weight: Translated: 28466; Mature: 28466

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
5.9 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
5.9 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEWLTSPEIWVAFFTLTALEIVLGIDNIIMISILVSRMPKHMQPRTRIFGLALAMVTRIM
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHH
LLLSITWVMRLTDDLFHVLGQGISGRDLILFFGGLFLLWKSSQEIYHGLEGEDESPDEPK
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCC
GAGGKFFYTIIQIAIIDIVFSLDSVITAVGMVSHVPVMIAAIIVAVLVMMLCAGTISDFI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DKHPSLKMLALSFLIVVGTVLIAESFDVHVPKGYVYFAMAFSLAVEAINIRMRTAMARKK
HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GKEHEPVKLRKDIPGQ
CCCCCCCHHCCCCCCC
>Mature Secondary Structure
MEWLTSPEIWVAFFTLTALEIVLGIDNIIMISILVSRMPKHMQPRTRIFGLALAMVTRIM
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHH
LLLSITWVMRLTDDLFHVLGQGISGRDLILFFGGLFLLWKSSQEIYHGLEGEDESPDEPK
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCC
GAGGKFFYTIIQIAIIDIVFSLDSVITAVGMVSHVPVMIAAIIVAVLVMMLCAGTISDFI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DKHPSLKMLALSFLIVVGTVLIAESFDVHVPKGYVYFAMAFSLAVEAINIRMRTAMARKK
HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GKEHEPVKLRKDIPGQ
CCCCCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]