| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488586
Identifier: 103488586
GI number: 103488586
Start: 3260474
End: 3261673
Strand: Direct
Name: 103488586
Synonym: Sala_3110
Alternate gene names: NA
Gene position: 3260474-3261673 (Clockwise)
Preceding gene: 103488584
Following gene: 103488587
Centisome position: 97.47
GC content: 66.25
Gene sequence:
>1200_bases ATGGCAAGCACGGGCATGGCCAGCGCAACTCCTCCCGCCTCTGCCGTCGAAGCGAACCGTCGCGGCATTGCTGCCTTGCA AGCCGGCGACCATGAAGCGGCCGCGCAGCATTTCACTGCGGCAATCGCCTCCGATCCCCATTCGGGCGCCCTGCAGCGCA ACCTGGCGTCGGCGCGGCGCGCGCTGGGTGACGATAAGGGGGAACTCGCCGCGCTTGACGCTGCGCTGGCGATCGATCGC CGCGACATGATTGCCTGGATTCGCAAGGGCGAGCGTCACGAAGCGCGCGGCGAGATGGGGCAGGCACTTGCTGCGTGGAG TGCCGCCGTTGCCCTTGGTGCGCAGCTCGATCCGGTGCCACCGCCGCTCGCGCCGCTGCTCGCGCACGGGCAGGATTTCC TTGACCGGGCGACGGGCGCGATGTTCACCGCCGCGTCGGCTGCGTTCGAGGAGATGCGCGACAACCTCACCGAAACCGAG GCGCGACGCGGCGCAGCCTTTGTCGCGAGCGCGCTTGGTCGCCGCCGCATCTACCGCAACGAATGTGCTGGAGTCTATTA TCCCTTTCTTCCCGCCGACGAGTTTTTTGATCGCGGGCATTTCCCCTGGTTTACCGAGATCGAGGCGCAGACCGATGCGA TCCGCGGTGAATTGCAGGCGCTGCTCGCCGATCCGGGCGAAGCGCTGAGACCCTATGTGCGGATGGAGGCGGGGTCGCCG GAGACAATCTGGTCGCCGCTCGACAACCGGCTCGACTGGGGCGCCTGCTTCCTGTGGGAATATGGCGAGCCGAACCAACC GGTGCTTGATCGCTGCCCGGCCACGGCGGCGGCACTCGCGGCCGTTCCGGGCGCGCGCATTCCCGGTCGGGCGCCGAGCG CCTTTTTCTCCCTGCTGAAGCCACACACGCGCATTCCACCGCACACGGGCGTCACCAACACGCGTGCGATCGTACATCTG CCACTGATTGTTCCGCCGGGCTGCGGCTTTCGGGTGGGTGGAGAAACGCGCCAATGGCAAGAGGGCGTTGCATTCGCCTT TGACGATACCATCGAGCATGAAGCGTGGAACGAGAGCGACGAGTTGCGCGCCGTTCTGATCTTCGACGTCTGGAACCCGC ATATGACCGCGGGGGAACGCGAACTGCTTCTTCGCTATTTCGCATCCGCCGATGCGTCGGGCTATGCAGTGCCGCGCTAG
Upstream 100 bases:
>100_bases GTCGGGATCATAGCGATGCGCCAGCCAGGCGGCGTCGTCGATTACGGCGGACACAGATGGCGCGGCGGGCATCGATCAAC CTTGCCGATTGGCGCGGCCG
Downstream 100 bases:
>100_bases GAGCCTCGGGGGTCGATTCGGGCTTGCGAAAGGAAGCGTCGCCAATAAGATTGTGTGTATGATCCTGCGGGAAGACCCGC GACAGGAGATATCGCATGAC
Product: aspartyl/asparaginyl beta-hydroxylase
Products: NA
Alternate protein names: Beta-Hydroxylase; Beta-Hydroxylase Aspartyl/Asparaginyl Family; Aspartyl/Asparaginyl Beta-Hydroxylase Family Protein; Peptide-Aspartate Beta-Dioxygenase; Asparaginyl Beta-Hydroxylase; Aspartyl/Asparaginyl-Beta-Hydroxylase; Hydroxylase; Aspartyl/Asparaginyl Beta-Hydroxylase Family; Beta-Hydroxylase Aspartyl/Asparaginyl Family Protein
Number of amino acids: Translated: 399; Mature: 398
Protein sequence:
>399_residues MASTGMASATPPASAVEANRRGIAALQAGDHEAAAQHFTAAIASDPHSGALQRNLASARRALGDDKGELAALDAALAIDR RDMIAWIRKGERHEARGEMGQALAAWSAAVALGAQLDPVPPPLAPLLAHGQDFLDRATGAMFTAASAAFEEMRDNLTETE ARRGAAFVASALGRRRIYRNECAGVYYPFLPADEFFDRGHFPWFTEIEAQTDAIRGELQALLADPGEALRPYVRMEAGSP ETIWSPLDNRLDWGACFLWEYGEPNQPVLDRCPATAAALAAVPGARIPGRAPSAFFSLLKPHTRIPPHTGVTNTRAIVHL PLIVPPGCGFRVGGETRQWQEGVAFAFDDTIEHEAWNESDELRAVLIFDVWNPHMTAGERELLLRYFASADASGYAVPR
Sequences:
>Translated_399_residues MASTGMASATPPASAVEANRRGIAALQAGDHEAAAQHFTAAIASDPHSGALQRNLASARRALGDDKGELAALDAALAIDR RDMIAWIRKGERHEARGEMGQALAAWSAAVALGAQLDPVPPPLAPLLAHGQDFLDRATGAMFTAASAAFEEMRDNLTETE ARRGAAFVASALGRRRIYRNECAGVYYPFLPADEFFDRGHFPWFTEIEAQTDAIRGELQALLADPGEALRPYVRMEAGSP ETIWSPLDNRLDWGACFLWEYGEPNQPVLDRCPATAAALAAVPGARIPGRAPSAFFSLLKPHTRIPPHTGVTNTRAIVHL PLIVPPGCGFRVGGETRQWQEGVAFAFDDTIEHEAWNESDELRAVLIFDVWNPHMTAGERELLLRYFASADASGYAVPR >Mature_398_residues ASTGMASATPPASAVEANRRGIAALQAGDHEAAAQHFTAAIASDPHSGALQRNLASARRALGDDKGELAALDAALAIDRR DMIAWIRKGERHEARGEMGQALAAWSAAVALGAQLDPVPPPLAPLLAHGQDFLDRATGAMFTAASAAFEEMRDNLTETEA RRGAAFVASALGRRRIYRNECAGVYYPFLPADEFFDRGHFPWFTEIEAQTDAIRGELQALLADPGEALRPYVRMEAGSPE TIWSPLDNRLDWGACFLWEYGEPNQPVLDRCPATAAALAAVPGARIPGRAPSAFFSLLKPHTRIPPHTGVTNTRAIVHLP LIVPPGCGFRVGGETRQWQEGVAFAFDDTIEHEAWNESDELRAVLIFDVWNPHMTAGERELLLRYFASADASGYAVPR
Specific function: Unknown
COG id: COG3555
COG function: function code O; Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI14589866, Length=138, Percent_Identity=36.231884057971, Blast_Score=103, Evalue=3e-22, Organism=Homo sapiens, GI258613943, Length=138, Percent_Identity=36.231884057971, Blast_Score=103, Evalue=3e-22, Organism=Homo sapiens, GI194328779, Length=121, Percent_Identity=38.0165289256198, Blast_Score=77, Evalue=3e-14, Organism=Homo sapiens, GI38708313, Length=135, Percent_Identity=36.2962962962963, Blast_Score=75, Evalue=8e-14, Organism=Drosophila melanogaster, GI24654024, Length=133, Percent_Identity=34.5864661654135, Blast_Score=84, Evalue=2e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43152; Mature: 43021
Theoretical pI: Translated: 5.16; Mature: 5.16
Prosite motif: PS50005 TPR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASTGMASATPPASAVEANRRGIAALQAGDHEAAAQHFTAAIASDPHSGALQRNLASARR CCCCCCCCCCCCHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH ALGDDKGELAALDAALAIDRRDMIAWIRKGERHEARGEMGQALAAWSAAVALGAQLDPVP HHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC PPLAPLLAHGQDFLDRATGAMFTAASAAFEEMRDNLTETEARRGAAFVASALGRRRIYRN CCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ECAGVYYPFLPADEFFDRGHFPWFTEIEAQTDAIRGELQALLADPGEALRPYVRMEAGSP CCCCEEECCCCCHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCHHHCCEEEECCCCC ETIWSPLDNRLDWGACFLWEYGEPNQPVLDRCPATAAALAAVPGARIPGRAPSAFFSLLK CHHHHHHCCCCCCCEEEEEECCCCCCCHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHC PHTRIPPHTGVTNTRAIVHLPLIVPPGCGFRVGGETRQWQEGVAFAFDDTIEHEAWNESD CCCCCCCCCCCCCCCEEEEEEEEECCCCCEEECCCCHHHHCCCEEEECCHHHHHCCCCCC ELRAVLIFDVWNPHMTAGERELLLRYFASADASGYAVPR CEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure ASTGMASATPPASAVEANRRGIAALQAGDHEAAAQHFTAAIASDPHSGALQRNLASARR CCCCCCCCCCCHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH ALGDDKGELAALDAALAIDRRDMIAWIRKGERHEARGEMGQALAAWSAAVALGAQLDPVP HHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC PPLAPLLAHGQDFLDRATGAMFTAASAAFEEMRDNLTETEARRGAAFVASALGRRRIYRN CCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ECAGVYYPFLPADEFFDRGHFPWFTEIEAQTDAIRGELQALLADPGEALRPYVRMEAGSP CCCCEEECCCCCHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCHHHCCEEEECCCCC ETIWSPLDNRLDWGACFLWEYGEPNQPVLDRCPATAAALAAVPGARIPGRAPSAFFSLLK CHHHHHHCCCCCCCEEEEEECCCCCCCHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHC PHTRIPPHTGVTNTRAIVHLPLIVPPGCGFRVGGETRQWQEGVAFAFDDTIEHEAWNESD CCCCCCCCCCCCCCCEEEEEEEEECCCCCEEECCCCHHHHCCCEEEECCHHHHHCCCCCC ELRAVLIFDVWNPHMTAGERELLLRYFASADASGYAVPR CEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA