| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488570
Identifier: 103488570
GI number: 103488570
Start: 3244486
End: 3245262
Strand: Direct
Name: 103488570
Synonym: Sala_3094
Alternate gene names: NA
Gene position: 3244486-3245262 (Clockwise)
Preceding gene: 103488566
Following gene: 103488571
Centisome position: 96.99
GC content: 65.12
Gene sequence:
>777_bases ATGCGCCTGTCTAGCGGGCTTTGGCGACAGGGCAAGGGGCGCGCGCCGCCGCATCTTTCCCGGTCTTTCCAGCGTGCAAA AAAGCGACTATCGGGCGGCATGACCGAACCGACCTCGACGGCGCTGCCGCGCACGCTCTCGCCCTCGCTCTTCCTTTTCT CGATCGTCTATGGCGGCATGGTCGTGCTCGCGGGGGTGCTCGGCAACAAGCAGGTCGCGCTCGGCGACTGGCTGGCGGTC GAGGCGGGGATTTTCGCGTTTCTGATGCTTGTCGCCTTGTCGAGCGCGGTGTCGGAGCTGCACGGCCAGACGGTCGCCAA TCGCATCGTCCTGTGGGGGTTTGTGCCCCTCGTGCTGTCGATCATGCTCACCGCGCTGGTCCTCGCGCTTCCCGCCTCAC CCGAAATGCAGCCCGAACGGCTCGCGGCCTTTGACATGATCCTTGGGCAAAGCCCGCGCCTGATGGCCGCCGGGATCGTT GCGTACGGCACGTCGCAGTTCCTTAACGTCACCATCTTTTCCAGGCTGCGCGGGCGCGAGAGCGCCGGTACCGGGACGAC CTGGCTCGCGATCCGCGGCGCGATCGCCAGCGCCTTGAGCCAGATCGTCGATACTTTGCTGTTCGTGACGATCGCCTTTT ACGGCGTGTTCCCGATCGCCAATCTGATGGGCGGACAGATGCTCGCCAAGGTCGTGCTGTCGGTGCTCGTCATTCCCTTC GTCATCACCGGGCTGGTCGCGCTGGGCCGCAGCCTCGATGCGAAAAACGCCGGATGA
Upstream 100 bases:
>100_bases CGCCGGTTCGATGAAAAAAGCACGGCAATCATGAGCAATGCGGCGATGCCGGCCAGACCGATCAGGCGTTCCATAATGTC GATGCGTCCCCCGCAAGTTA
Downstream 100 bases:
>100_bases TGACGATGGCCGATCCTTCGAAAATGCCCGACCTGCTCGCCAAGGCCGAAACACTCGTCGAGGCGCTGCCCTATCTGCAG CGTTATGCGGGCCAGACCTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 258; Mature: 258
Protein sequence:
>258_residues MRLSSGLWRQGKGRAPPHLSRSFQRAKKRLSGGMTEPTSTALPRTLSPSLFLFSIVYGGMVVLAGVLGNKQVALGDWLAV EAGIFAFLMLVALSSAVSELHGQTVANRIVLWGFVPLVLSIMLTALVLALPASPEMQPERLAAFDMILGQSPRLMAAGIV AYGTSQFLNVTIFSRLRGRESAGTGTTWLAIRGAIASALSQIVDTLLFVTIAFYGVFPIANLMGGQMLAKVVLSVLVIPF VITGLVALGRSLDAKNAG
Sequences:
>Translated_258_residues MRLSSGLWRQGKGRAPPHLSRSFQRAKKRLSGGMTEPTSTALPRTLSPSLFLFSIVYGGMVVLAGVLGNKQVALGDWLAV EAGIFAFLMLVALSSAVSELHGQTVANRIVLWGFVPLVLSIMLTALVLALPASPEMQPERLAAFDMILGQSPRLMAAGIV AYGTSQFLNVTIFSRLRGRESAGTGTTWLAIRGAIASALSQIVDTLLFVTIAFYGVFPIANLMGGQMLAKVVLSVLVIPF VITGLVALGRSLDAKNAG >Mature_258_residues MRLSSGLWRQGKGRAPPHLSRSFQRAKKRLSGGMTEPTSTALPRTLSPSLFLFSIVYGGMVVLAGVLGNKQVALGDWLAV EAGIFAFLMLVALSSAVSELHGQTVANRIVLWGFVPLVLSIMLTALVLALPASPEMQPERLAAFDMILGQSPRLMAAGIV AYGTSQFLNVTIFSRLRGRESAGTGTTWLAIRGAIASALSQIVDTLLFVTIAFYGVFPIANLMGGQMLAKVVLSVLVIPF VITGLVALGRSLDAKNAG
Specific function: Unknown
COG id: COG1738
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27312; Mature: 27312
Theoretical pI: Translated: 11.64; Mature: 11.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLSSGLWRQGKGRAPPHLSRSFQRAKKRLSGGMTEPTSTALPRTLSPSLFLFSIVYGGM CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCHHHHHHHHHHHHH VVLAGVLGNKQVALGDWLAVEAGIFAFLMLVALSSAVSELHGQTVANRIVLWGFVPLVLS HHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IMLTALVLALPASPEMQPERLAAFDMILGQSPRLMAAGIVAYGTSQFLNVTIFSRLRGRE HHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHCCC SAGTGTTWLAIRGAIASALSQIVDTLLFVTIAFYGVFPIANLMGGQMLAKVVLSVLVIPF CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VITGLVALGRSLDAKNAG HHHHHHHHCCCCCCCCCC >Mature Secondary Structure MRLSSGLWRQGKGRAPPHLSRSFQRAKKRLSGGMTEPTSTALPRTLSPSLFLFSIVYGGM CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCHHHHHHHHHHHHH VVLAGVLGNKQVALGDWLAVEAGIFAFLMLVALSSAVSELHGQTVANRIVLWGFVPLVLS HHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IMLTALVLALPASPEMQPERLAAFDMILGQSPRLMAAGIVAYGTSQFLNVTIFSRLRGRE HHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHCCC SAGTGTTWLAIRGAIASALSQIVDTLLFVTIAFYGVFPIANLMGGQMLAKVVLSVLVIPF CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VITGLVALGRSLDAKNAG HHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA