| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is uxuB [H]
Identifier: 103488523
GI number: 103488523
Start: 3198038
End: 3199330
Strand: Direct
Name: uxuB [H]
Synonym: Sala_3047
Alternate gene names: 103488523
Gene position: 3198038-3199330 (Clockwise)
Preceding gene: 103488522
Following gene: 103488525
Centisome position: 95.6
GC content: 69.61
Gene sequence:
>1293_bases GTGCAGGCGCCGGGCTACGACCGCGCCGCGCAGGCCGCCGGTATCGTTCATATCGGCATCGGCGCCTTTCACCGCGCGCA TCAGGCGGTTTACACCGACGACGCGATGGGCGCGGGCGACCGCGATTGGGGCATCATCGGTGTGTCGCTGCGCTCGGGCG TTGTCGCGGCGCAGCTGGGTCCGCAGGACGGGCTCTATACCGTCAGCACGCGCAGCGCAGCGGGGAGCGCGCTGCGCCTG ATCGGCTCGGTGCAGCGGGTGCTCGTCGCGGCAGACGTGCCGCAGGGGGTGGTCGATGCCATCGCGGCATCCACGACGCA TATTGTCAGCTTCACAGTGACCGAAAAGGGCTATCTGCGCGCCGCCGACGGCACGCTCGACCTTGCGGCGGCCAACGGCA CGTCGAGCCTCTATCGCTTCGTCGGCGCCGCGCTCGCCGCGCGCCAAGCGGCAGGACTGTCGGGGCTGACGCTGCTGAGC TGCGACAATCTGGCGAATAACGGCGCCGTTCTGGGACGGCTGATGCGGCAGTATCTCGCCGCCGAGTATCCGGGTCTTGT CGATTGGTTCGATGCGAATTGCACCTGTCCCGCGACGATGATCGACCGCATCGTCCCCGCCACCACCGACGCCGACCGCG CGGCGGTCGAAGCCGCGCTCGGCGCGCGCGACGAGGGCGCCGTCGTCACCGAAGGCTTCAGCCAGTGGGTGATAGAGGAT GATTTCGCGGGCCCGCGCCCGCGTTGGGAGGCGGCCGGGGTCGAACTCGTCGCCGATGTCGCGCCCTATGAGACCGCGAA GCTCCGGATGCTCAACGGCGCGCATTCGGCGCTCGCCTATATCGGGCTGGGGCGCGGCCATGATTTTGTCCATCAGGCGA TCGCCGATCCCGACATCTGCCCGGTGATCGAGCGGTTGATGCGCGCCGAGGCCGCGCCGACGATCGACGCGGCGCCGGGG CAGGATCTCGCCGCCTACGCCAGTGCGCTGCTCGATCGCTTCGCCAATCCGGCGCTCCATCACCGGCTGACCCAGATCGC GATGGACGGCAGCCAGAAGATCCCGCAGCGCTGGCTGGAGACGCTGGCGTGGCATCAGGCACGCGGTGCGCGGTGCCCGT CGCTCGAAGCGGCCGTTGCGGCGTGGATCGCCTTTTTGCGGAGCGGTCAGCCGGTCGACGATCCGCTGGCGGACAGGTTG CGCGAGGCGGCGGCGGGGCCCGATGCGATGGACCGACTCTTCGGCGAAGGCGGCCTGATCGCGTCGCAGTGGCAGCCCCG CAATCGAGAATAA
Upstream 100 bases:
>100_bases AATGGGAGGCCGCCGAACTCGCGGCCGATCTCAGCTACAATCTCGCCAAGGCGTCCTACAAACTGTGAGGCTTGGTCCCG ACACGCCGCTCCCGGCCTCG
Downstream 100 bases:
>100_bases TCCCGTCATTGCGAGCGAAGCGAAGCAATCTCCAGCTATCGGTCCGCGATGTCGATGGCTGGGGATTGCTTCGTCGCTAC GCTCCTCGCAATGACGAAGG
Product: mannitol dehydrogenase-like protein
Products: NA
Alternate protein names: Fructuronate reductase [H]
Number of amino acids: Translated: 430; Mature: 430
Protein sequence:
>430_residues MQAPGYDRAAQAAGIVHIGIGAFHRAHQAVYTDDAMGAGDRDWGIIGVSLRSGVVAAQLGPQDGLYTVSTRSAAGSALRL IGSVQRVLVAADVPQGVVDAIAASTTHIVSFTVTEKGYLRAADGTLDLAAANGTSSLYRFVGAALAARQAAGLSGLTLLS CDNLANNGAVLGRLMRQYLAAEYPGLVDWFDANCTCPATMIDRIVPATTDADRAAVEAALGARDEGAVVTEGFSQWVIED DFAGPRPRWEAAGVELVADVAPYETAKLRMLNGAHSALAYIGLGRGHDFVHQAIADPDICPVIERLMRAEAAPTIDAAPG QDLAAYASALLDRFANPALHHRLTQIAMDGSQKIPQRWLETLAWHQARGARCPSLEAAVAAWIAFLRSGQPVDDPLADRL REAAAGPDAMDRLFGEGGLIASQWQPRNRE
Sequences:
>Translated_430_residues MQAPGYDRAAQAAGIVHIGIGAFHRAHQAVYTDDAMGAGDRDWGIIGVSLRSGVVAAQLGPQDGLYTVSTRSAAGSALRL IGSVQRVLVAADVPQGVVDAIAASTTHIVSFTVTEKGYLRAADGTLDLAAANGTSSLYRFVGAALAARQAAGLSGLTLLS CDNLANNGAVLGRLMRQYLAAEYPGLVDWFDANCTCPATMIDRIVPATTDADRAAVEAALGARDEGAVVTEGFSQWVIED DFAGPRPRWEAAGVELVADVAPYETAKLRMLNGAHSALAYIGLGRGHDFVHQAIADPDICPVIERLMRAEAAPTIDAAPG QDLAAYASALLDRFANPALHHRLTQIAMDGSQKIPQRWLETLAWHQARGARCPSLEAAVAAWIAFLRSGQPVDDPLADRL REAAAGPDAMDRLFGEGGLIASQWQPRNRE >Mature_430_residues MQAPGYDRAAQAAGIVHIGIGAFHRAHQAVYTDDAMGAGDRDWGIIGVSLRSGVVAAQLGPQDGLYTVSTRSAAGSALRL IGSVQRVLVAADVPQGVVDAIAASTTHIVSFTVTEKGYLRAADGTLDLAAANGTSSLYRFVGAALAARQAAGLSGLTLLS CDNLANNGAVLGRLMRQYLAAEYPGLVDWFDANCTCPATMIDRIVPATTDADRAAVEAALGARDEGAVVTEGFSQWVIED DFAGPRPRWEAAGVELVADVAPYETAKLRMLNGAHSALAYIGLGRGHDFVHQAIADPDICPVIERLMRAEAAPTIDAAPG QDLAAYASALLDRFANPALHHRLTQIAMDGSQKIPQRWLETLAWHQARGARCPSLEAAVAAWIAFLRSGQPVDDPLADRL REAAAGPDAMDRLFGEGGLIASQWQPRNRE
Specific function: Hexuronate conversion to KDG. [C]
COG id: COG0246
COG function: function code G; Mannitol-1-phosphate/altronate dehydrogenases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mannitol dehydrogenase family. UxuB subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790779, Length=448, Percent_Identity=39.9553571428571, Blast_Score=300, Evalue=1e-82, Organism=Escherichia coli, GI1787823, Length=418, Percent_Identity=42.3444976076555, Blast_Score=296, Evalue=2e-81, Organism=Escherichia coli, GI1788497, Length=431, Percent_Identity=40.3712296983759, Blast_Score=293, Evalue=2e-80, Organism=Escherichia coli, GI48994885, Length=430, Percent_Identity=30.2325581395349, Blast_Score=137, Evalue=1e-33, Organism=Escherichia coli, GI1790028, Length=258, Percent_Identity=25.968992248062, Blast_Score=70, Evalue=3e-13, Organism=Saccharomyces cerevisiae, GI6324401, Length=424, Percent_Identity=35.8490566037736, Blast_Score=278, Evalue=1e-75, Organism=Saccharomyces cerevisiae, GI6320765, Length=424, Percent_Identity=35.8490566037736, Blast_Score=278, Evalue=1e-75,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008927 - InterPro: IPR013328 - InterPro: IPR000669 - InterPro: IPR013118 - InterPro: IPR023027 - InterPro: IPR013131 - InterPro: IPR016040 [H]
Pfam domain/function: PF01232 Mannitol_dh; PF08125 Mannitol_dh_C [H]
EC number: =1.1.1.57 [H]
Molecular weight: Translated: 45320; Mature: 45320
Theoretical pI: Translated: 5.10; Mature: 5.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQAPGYDRAAQAAGIVHIGIGAFHRAHQAVYTDDAMGAGDRDWGIIGVSLRSGVVAAQLG CCCCCCCHHHHHCCEEEECHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHCCEEEEECC PQDGLYTVSTRSAAGSALRLIGSVQRVLVAADVPQGVVDAIAASTTHIVSFTVTEKGYLR CCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCEEEEEEEEECCCEEE AADGTLDLAAANGTSSLYRFVGAALAARQAAGLSGLTLLSCDNLANNGAVLGRLMRQYLA ECCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH AEYPGLVDWFDANCTCPATMIDRIVPATTDADRAAVEAALGARDEGAVVTEGFSQWVIED HCCCCCEEECCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCEEECCCHHHEEEC DFAGPRPRWEAAGVELVADVAPYETAKLRMLNGAHSALAYIGLGRGHDFVHQAIADPDIC CCCCCCCCCHHCCHHHEECCCCCCHHHEEECCCHHHHHHHHCCCCCHHHHHHHHCCCCHH PVIERLMRAEAAPTIDAAPGQDLAAYASALLDRFANPALHHRLTQIAMDGSQKIPQRWLE HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHH TLAWHQARGARCPSLEAAVAAWIAFLRSGQPVDDPLADRLREAAAGPDAMDRLFGEGGLI HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCEE ASQWQPRNRE ECCCCCCCCC >Mature Secondary Structure MQAPGYDRAAQAAGIVHIGIGAFHRAHQAVYTDDAMGAGDRDWGIIGVSLRSGVVAAQLG CCCCCCCHHHHHCCEEEECHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHCCEEEEECC PQDGLYTVSTRSAAGSALRLIGSVQRVLVAADVPQGVVDAIAASTTHIVSFTVTEKGYLR CCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCEEEEEEEEECCCEEE AADGTLDLAAANGTSSLYRFVGAALAARQAAGLSGLTLLSCDNLANNGAVLGRLMRQYLA ECCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH AEYPGLVDWFDANCTCPATMIDRIVPATTDADRAAVEAALGARDEGAVVTEGFSQWVIED HCCCCCEEECCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCEEECCCHHHEEEC DFAGPRPRWEAAGVELVADVAPYETAKLRMLNGAHSALAYIGLGRGHDFVHQAIADPDIC CCCCCCCCCHHCCHHHEECCCCCCHHHEEECCCHHHHHHHHCCCCCHHHHHHHHCCCCHH PVIERLMRAEAAPTIDAAPGQDLAAYASALLDRFANPALHHRLTQIAMDGSQKIPQRWLE HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHH TLAWHQARGARCPSLEAAVAAWIAFLRSGQPVDDPLADRLREAAAGPDAMDRLFGEGGLI HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCEE ASQWQPRNRE ECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503 [H]