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The map label for this gene is 103488456

Identifier: 103488456

GI number: 103488456

Start: 3122801

End: 3123448

Strand: Reverse

Name: 103488456

Synonym: Sala_2979

Alternate gene names: NA

Gene position: 3123448-3122801 (Counterclockwise)

Preceding gene: 103488460

Following gene: 103488455

Centisome position: 93.37

GC content: 68.06

Gene sequence:

>648_bases
ATGATGAATGTCGCAAATATGGGGCAAAGGATCGTCCGTGCAAGTCTGATCCTCGTTTTCGGCGCCGCGCTGGCGGGCTG
CGACGGCAGCGGCGGCAGCGCCGCGCCCGCCCGGCCGCCGCTCGAAGGCGCGCGGATCGGCGGCCCGTTCACGCTGACCG
ACCAGAATGGCCGCACCGTCCGCGACAGCGATTTTGCCGGCCGCTATCGCCTCATCTATTTCGGCTACAGCTTCTGCCCC
GATATCTGCCCGGTCGACCTGCAAAAGCTGATGCGCGGCCTCGCCCGGTTCGAAAAGACCGATGCCGCGCGCGGCGCCAG
GGTCGCGCCGCTCTTCATCACCGTCGACCCCGCGCGCGACACGCCCGAAGCGCTCAAACCCTTTGTCGCGCGCTATCACC
CGCGCCTGCTCGGCCTGACCGGCACGCCCGAACAGATCGCCGCGGCCGCCAAAGCCTTTGTCGTCACCTATAACAAGGTG
CCGGGATCGGCCCCCGACCGCTATCTGATGGCGCACAGCCAGCTCGCCTTCCTGATGGGTCCCGACGGCAAGCCGCTCGC
GCTGCTGCCGCTCGACGACCCGACGACCGATCCCGACGAGGGTGCGCCCACCAAGGTCGCCGCCGAACTGGCCAAGTGGG
TCAAATAG

Upstream 100 bases:

>100_bases
GCGGCGGAACATGATCTGGGCGACCCCTGGGGCAATTTGTCCGCCGCTCGCGCGACGACAATGGTTGATTTTCGCGTGCT
AGCCGACCAAGGCTGGCCAC

Downstream 100 bases:

>100_bases
CGATGGCGGGGGCGACATCGGAGCGCCCCTTCTGGGAAGCGCCGCTCGCCAGCCTCGACGCAGGCCAGTGGGAGGCACTC
TGCGACGGCTGTGGCAAATG

Product: electron transport protein SCO1/SenC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MMNVANMGQRIVRASLILVFGAALAGCDGSGGSAAPARPPLEGARIGGPFTLTDQNGRTVRDSDFAGRYRLIYFGYSFCP
DICPVDLQKLMRGLARFEKTDAARGARVAPLFITVDPARDTPEALKPFVARYHPRLLGLTGTPEQIAAAAKAFVVTYNKV
PGSAPDRYLMAHSQLAFLMGPDGKPLALLPLDDPTTDPDEGAPTKVAAELAKWVK

Sequences:

>Translated_215_residues
MMNVANMGQRIVRASLILVFGAALAGCDGSGGSAAPARPPLEGARIGGPFTLTDQNGRTVRDSDFAGRYRLIYFGYSFCP
DICPVDLQKLMRGLARFEKTDAARGARVAPLFITVDPARDTPEALKPFVARYHPRLLGLTGTPEQIAAAAKAFVVTYNKV
PGSAPDRYLMAHSQLAFLMGPDGKPLALLPLDDPTTDPDEGAPTKVAAELAKWVK
>Mature_215_residues
MMNVANMGQRIVRASLILVFGAALAGCDGSGGSAAPARPPLEGARIGGPFTLTDQNGRTVRDSDFAGRYRLIYFGYSFCP
DICPVDLQKLMRGLARFEKTDAARGARVAPLFITVDPARDTPEALKPFVARYHPRLLGLTGTPEQIAAAAKAFVVTYNKV
PGSAPDRYLMAHSQLAFLMGPDGKPLALLPLDDPTTDPDEGAPTKVAAELAKWVK

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI4759068, Length=139, Percent_Identity=38.8489208633094, Blast_Score=124, Evalue=6e-29,
Organism=Homo sapiens, GI281182727, Length=144, Percent_Identity=43.0555555555556, Blast_Score=121, Evalue=5e-28,
Organism=Homo sapiens, GI281182722, Length=144, Percent_Identity=43.0555555555556, Blast_Score=121, Evalue=5e-28,
Organism=Homo sapiens, GI281182716, Length=144, Percent_Identity=43.0555555555556, Blast_Score=121, Evalue=5e-28,
Organism=Homo sapiens, GI153791313, Length=144, Percent_Identity=43.0555555555556, Blast_Score=121, Evalue=5e-28,
Organism=Caenorhabditis elegans, GI17531419, Length=144, Percent_Identity=34.7222222222222, Blast_Score=105, Evalue=2e-23,
Organism=Saccharomyces cerevisiae, GI6319498, Length=140, Percent_Identity=38.5714285714286, Blast_Score=124, Evalue=8e-30,
Organism=Saccharomyces cerevisiae, GI6319511, Length=140, Percent_Identity=41.4285714285714, Blast_Score=119, Evalue=3e-28,
Organism=Drosophila melanogaster, GI19920710, Length=173, Percent_Identity=37.5722543352601, Blast_Score=126, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 22957; Mature: 22957

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNVANMGQRIVRASLILVFGAALAGCDGSGGSAAPARPPLEGARIGGPFTLTDQNGRTV
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEE
RDSDFAGRYRLIYFGYSFCPDICPVDLQKLMRGLARFEKTDAARGARVAPLFITVDPARD
CCCCCCCCEEEEEECHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCC
TPEALKPFVARYHPRLLGLTGTPEQIAAAAKAFVVTYNKVPGSAPDRYLMAHSQLAFLMG
CHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHEEEEECCCCCCCCCHHHHHHCCEEEEEC
PDGKPLALLPLDDPTTDPDEGAPTKVAAELAKWVK
CCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MMNVANMGQRIVRASLILVFGAALAGCDGSGGSAAPARPPLEGARIGGPFTLTDQNGRTV
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEE
RDSDFAGRYRLIYFGYSFCPDICPVDLQKLMRGLARFEKTDAARGARVAPLFITVDPARD
CCCCCCCCEEEEEECHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCC
TPEALKPFVARYHPRLLGLTGTPEQIAAAAKAFVVTYNKVPGSAPDRYLMAHSQLAFLMG
CHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHEEEEECCCCCCCCCHHHHHHCCEEEEEC
PDGKPLALLPLDDPTTDPDEGAPTKVAAELAKWVK
CCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA