Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103488454

Identifier: 103488454

GI number: 103488454

Start: 3121640

End: 3122323

Strand: Reverse

Name: 103488454

Synonym: Sala_2977

Alternate gene names: NA

Gene position: 3122323-3121640 (Counterclockwise)

Preceding gene: 103488455

Following gene: 103488451

Centisome position: 93.34

GC content: 73.1

Gene sequence:

>684_bases
GTGGGGGATGCGGCATGGCCGGTGCGCATCGTCCGCCACGCGCAGTCGCGCCGCTATCGCCTGATTTTCGATGGTGCGCG
CGGCGAACTGCGGCTCACCGTGCCGCGCCGCGCGAGCGAACGCGCGGCGATCAAATGGGCCGCCGAGCAGCAGGCGTGGC
TCGCCGAACAGATCGGCAAGGCGGTCAGGCCGGTGATGGTCGGCCCCGGCGCCGTCATCCCCTTTCGCGGCATCGAGCGG
CGCATCGACTGGTCGCCGGGCGCGCCGCGCACCATCCGGCTGGGCAGCGATACGCTCGGCGTCGGCGGCCCGGTCGAGAG
CGTCGGCCGCCGCATCGAGCGCTGGCTGAAGGCCGAGGCGCTCACGCTCATGGAAAGCGAGAGCCGCGCAATTGCGGGCG
CGGCGGGACTGGCCGTCGGCCGCGTCGGCGTCGGCGACCCGCGCAGCCGCTGGGGCAGTTGCACCCACGATGGCGACCTG
CGCTACAGCTGGCGGCTGATCATGGCGCCCGACCATGTCCGCCGCGCGACCGTGGCGCACGAGGTCGCGCATCTTCGCCA
TATGGATCACAGCCCGGTCTTTCATGCGCTCGTCGCCACGCTGCACGACGGCGACGTCGCCGCGGCGCGCGGCTGGCTGC
GGCGCGAAGGGCGCGCGCTGCACCGTTATCGCTTTACCGCCTGA

Upstream 100 bases:

>100_bases
ATCGTCGGCTGGACGGTGAGCGAGGATGTCGCCGGGCCGCTCGAGAATCATCTTGTCGAACGCATCATTTGATCCGGCAG
CCGACGGGCCGCGCATCCGT

Downstream 100 bases:

>100_bases
GCGCGCTCAATCCGCGGGTTCGACGGGAGCGGGCCGCGGCGGCGGCACGCGGACCTGGGGCGGCGGCGCTTTCGGGACCG
AAATCACCTTGGGCTGGCCG

Product: hypothetical protein

Products: NA

Alternate protein names: Zinc Metallopeptidase; Metal-Dependent Hydrolase; Zinc Metallopeptidases-Like Protein; Zinc Metallopeptidase-Like Protein; Zinc Metallopeptidase Protein

Number of amino acids: Translated: 227; Mature: 226

Protein sequence:

>227_residues
MGDAAWPVRIVRHAQSRRYRLIFDGARGELRLTVPRRASERAAIKWAAEQQAWLAEQIGKAVRPVMVGPGAVIPFRGIER
RIDWSPGAPRTIRLGSDTLGVGGPVESVGRRIERWLKAEALTLMESESRAIAGAAGLAVGRVGVGDPRSRWGSCTHDGDL
RYSWRLIMAPDHVRRATVAHEVAHLRHMDHSPVFHALVATLHDGDVAAARGWLRREGRALHRYRFTA

Sequences:

>Translated_227_residues
MGDAAWPVRIVRHAQSRRYRLIFDGARGELRLTVPRRASERAAIKWAAEQQAWLAEQIGKAVRPVMVGPGAVIPFRGIER
RIDWSPGAPRTIRLGSDTLGVGGPVESVGRRIERWLKAEALTLMESESRAIAGAAGLAVGRVGVGDPRSRWGSCTHDGDL
RYSWRLIMAPDHVRRATVAHEVAHLRHMDHSPVFHALVATLHDGDVAAARGWLRREGRALHRYRFTA
>Mature_226_residues
GDAAWPVRIVRHAQSRRYRLIFDGARGELRLTVPRRASERAAIKWAAEQQAWLAEQIGKAVRPVMVGPGAVIPFRGIERR
IDWSPGAPRTIRLGSDTLGVGGPVESVGRRIERWLKAEALTLMESESRAIAGAAGLAVGRVGVGDPRSRWGSCTHDGDLR
YSWRLIMAPDHVRRATVAHEVAHLRHMDHSPVFHALVATLHDGDVAAARGWLRREGRALHRYRFTA

Specific function: Unknown

COG id: COG1451

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25213; Mature: 25082

Theoretical pI: Translated: 11.86; Mature: 11.86

Prosite motif: PS00216 SUGAR_TRANSPORT_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDAAWPVRIVRHAQSRRYRLIFDGARGELRLTVPRRASERAAIKWAAEQQAWLAEQIGK
CCCCHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCCCCHHHEEHHHHHHHHHHHHHHH
AVRPVMVGPGAVIPFRGIERRIDWSPGAPRTIRLGSDTLGVGGPVESVGRRIERWLKAEA
HHCCEEECCCCEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH
LTLMESESRAIAGAAGLAVGRVGVGDPRSRWGSCTHDGDLRYSWRLIMAPDHVRRATVAH
HHHHHCCCCHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCEEEEEEEECCCHHHHHHHHH
EVAHLRHMDHSPVFHALVATLHDGDVAAARGWLRREGRALHRYRFTA
HHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHEECCC
>Mature Secondary Structure 
GDAAWPVRIVRHAQSRRYRLIFDGARGELRLTVPRRASERAAIKWAAEQQAWLAEQIGK
CCCHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCCCCHHHEEHHHHHHHHHHHHHHH
AVRPVMVGPGAVIPFRGIERRIDWSPGAPRTIRLGSDTLGVGGPVESVGRRIERWLKAEA
HHCCEEECCCCEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH
LTLMESESRAIAGAAGLAVGRVGVGDPRSRWGSCTHDGDLRYSWRLIMAPDHVRRATVAH
HHHHHCCCCHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCEEEEEEEECCCHHHHHHHHH
EVAHLRHMDHSPVFHALVATLHDGDVAAARGWLRREGRALHRYRFTA
HHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA