| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488448
Identifier: 103488448
GI number: 103488448
Start: 3114575
End: 3115075
Strand: Reverse
Name: 103488448
Synonym: Sala_2971
Alternate gene names: NA
Gene position: 3115075-3114575 (Counterclockwise)
Preceding gene: 103488451
Following gene: 103488439
Centisome position: 93.12
GC content: 71.66
Gene sequence:
>501_bases ATGCCGCTCTCGGCCTTCGCGCGACGGGCGTTGCACCCCCGCGCGGCGACCGCTAGTTTCATGGCCATGAAACATGTCCT CGTTGTCCCCGCCGCCGTCCTGCTCGCCGTGTCGCTTGCCGCGTGCAACCAGCCCGCGCCGCCGCCCGACAACGCCCCCG AGGTCGCGGGCGAACCGCTCGCGACGCGCGCGGTGATGATCGGCACCGAGGGGCCAAGCCTGCCCGCCTGTTCGAGCATC AGCCGGGTCAAGGACGGCGGCACCGACGTCTATTGGGCGCCGAACGAGACGCGCGCGGTGAAGGCGAAGCTGGCCGGCGG CGCGCGCGTGTCGCTGTGCGAAGCGGCGGAGAATGACGCCTGGTTCGGCATCGTCTTTGCCGCGCCCGGCACCGATCCCG ACATGTGCGGCGTCGGCAGGTCGGTGCCGAATGCCCGCGAATATCAGGGGCCGTGCCGCTGGGGCTGGATTCGCGGCGGA ACGGTGCAGCTGGGGGGCTAA
Upstream 100 bases:
>100_bases TTGGCGTTGGGCTGTTTTGCGGCGCCTTCGGGCGCGCTGTTCTCGGGGGTGTCTGTCATGTCGATTATATAGGGTCGGCG CGCATAAAACCCAAGCGAAA
Downstream 100 bases:
>100_bases CGCGGAGCGGTGGGGCGCCGTTATGGTGAGTTTGGCCGATTGCGGACATAATAAGATCCTCCCCATCGCAAGTCGATGGG GAGGATCATCAACGGCAGAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 166; Mature: 165
Protein sequence:
>166_residues MPLSAFARRALHPRAATASFMAMKHVLVVPAAVLLAVSLAACNQPAPPPDNAPEVAGEPLATRAVMIGTEGPSLPACSSI SRVKDGGTDVYWAPNETRAVKAKLAGGARVSLCEAAENDAWFGIVFAAPGTDPDMCGVGRSVPNAREYQGPCRWGWIRGG TVQLGG
Sequences:
>Translated_166_residues MPLSAFARRALHPRAATASFMAMKHVLVVPAAVLLAVSLAACNQPAPPPDNAPEVAGEPLATRAVMIGTEGPSLPACSSI SRVKDGGTDVYWAPNETRAVKAKLAGGARVSLCEAAENDAWFGIVFAAPGTDPDMCGVGRSVPNAREYQGPCRWGWIRGG TVQLGG >Mature_165_residues PLSAFARRALHPRAATASFMAMKHVLVVPAAVLLAVSLAACNQPAPPPDNAPEVAGEPLATRAVMIGTEGPSLPACSSIS RVKDGGTDVYWAPNETRAVKAKLAGGARVSLCEAAENDAWFGIVFAAPGTDPDMCGVGRSVPNAREYQGPCRWGWIRGGT VQLGG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17165; Mature: 17034
Theoretical pI: Translated: 8.22; Mature: 8.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 3.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLSAFARRALHPRAATASFMAMKHVLVVPAAVLLAVSLAACNQPAPPPDNAPEVAGEPL CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC ATRAVMIGTEGPSLPACSSISRVKDGGTDVYWAPNETRAVKAKLAGGARVSLCEAAENDA CCEEEEEECCCCCCCCCHHHHHHCCCCCEEEECCCCCEEEEEECCCCCEEEEECCCCCCC WFGIVFAAPGTDPDMCGVGRSVPNAREYQGPCRWGWIRGGTVQLGG EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEECC >Mature Secondary Structure PLSAFARRALHPRAATASFMAMKHVLVVPAAVLLAVSLAACNQPAPPPDNAPEVAGEPL CHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC ATRAVMIGTEGPSLPACSSISRVKDGGTDVYWAPNETRAVKAKLAGGARVSLCEAAENDA CCEEEEEECCCCCCCCCHHHHHHCCCCCEEEECCCCCEEEEEECCCCCEEEEECCCCCCC WFGIVFAAPGTDPDMCGVGRSVPNAREYQGPCRWGWIRGGTVQLGG EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA