| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488411
Identifier: 103488411
GI number: 103488411
Start: 3078723
End: 3079322
Strand: Reverse
Name: 103488411
Synonym: Sala_2934
Alternate gene names: NA
Gene position: 3079322-3078723 (Counterclockwise)
Preceding gene: 103488412
Following gene: 103488410
Centisome position: 92.05
GC content: 71.5
Gene sequence:
>600_bases ATGTCTGACCTCGCCGCCGAAACGGGCTTTGCCCCTGTCAGCCTGGCCGACGCGATGGCGCGGCGCAGCGGCTTTCGCCC GCTGTCCTTCGCCCGCGCCGCTGAAACCACGGCGCCCGCGCCCGAACCGTCGGCCGATGACAGCGAGGACGATCCCTTCG CGCGCGGCCTCGCCGAAGGACAGCGTATCGCCGAAGCGGCCCACACCGCCGAACGGCACCAGCTGCTCGCGCTGCTTGCG AGCGCCGAGGCGTTGCAGGACGAGCCGAGCGAGGAACTGGCGCAGCTGATCGCCGAAACGGTCGAGCGGCTGGTGCGCCA GATCGTCGCCGCCGCCCCGATCGACGCCGAATGGCTGCGTCGGCAGGCCGAAACCGCTGCGGCATTGGTCGCCGACGCCG ACAAGGCGCGCACCCTGTGGGTGCATCCCGACGATGCCGCGCTGCTCGCCGATTGCCCGCTGACGCTCGCCGTCCAGAGC GACCCCGCGATGATGCGCGGCACCATCCGCCTCGAAACCTCGACCGGCTGGATCGAGCATGGCCGCGCCGTCTATCTCGA CGAACTGCGCGCCGCGCTCGGCGAAGGCACCGCCACATGA
Upstream 100 bases:
>100_bases AAGCGCGCCGACGTCGAGGATGCGCAAAAGAGCGTGATGCAGATCGTCCGCCAGATGGCGGCGAATGGCGAAATCATGAT CGCGGGCGGGGGCGACGATT
Downstream 100 bases:
>100_bases CGCGCCGCCTCACCCTGTCGGCCCAGCAGTTGCTCGGCGGCATCGACCTCGCCGACGCCAGCCCGCGCCGCATCGGCACG CTCGTCGCGCACGAGGGGAT
Product: flagellar biosynthetic protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 199; Mature: 198
Protein sequence:
>199_residues MSDLAAETGFAPVSLADAMARRSGFRPLSFARAAETTAPAPEPSADDSEDDPFARGLAEGQRIAEAAHTAERHQLLALLA SAEALQDEPSEELAQLIAETVERLVRQIVAAAPIDAEWLRRQAETAAALVADADKARTLWVHPDDAALLADCPLTLAVQS DPAMMRGTIRLETSTGWIEHGRAVYLDELRAALGEGTAT
Sequences:
>Translated_199_residues MSDLAAETGFAPVSLADAMARRSGFRPLSFARAAETTAPAPEPSADDSEDDPFARGLAEGQRIAEAAHTAERHQLLALLA SAEALQDEPSEELAQLIAETVERLVRQIVAAAPIDAEWLRRQAETAAALVADADKARTLWVHPDDAALLADCPLTLAVQS DPAMMRGTIRLETSTGWIEHGRAVYLDELRAALGEGTAT >Mature_198_residues SDLAAETGFAPVSLADAMARRSGFRPLSFARAAETTAPAPEPSADDSEDDPFARGLAEGQRIAEAAHTAERHQLLALLAS AEALQDEPSEELAQLIAETVERLVRQIVAAAPIDAEWLRRQAETAAALVADADKARTLWVHPDDAALLADCPLTLAVQSD PAMMRGTIRLETSTGWIEHGRAVYLDELRAALGEGTAT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21178; Mature: 21047
Theoretical pI: Translated: 4.23; Mature: 4.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDLAAETGFAPVSLADAMARRSGFRPLSFARAAETTAPAPEPSADDSEDDPFARGLAEG CCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH QRIAEAAHTAERHQLLALLASAEALQDEPSEELAQLIAETVERLVRQIVAAAPIDAEWLR HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH RQAETAAALVADADKARTLWVHPDDAALLADCPLTLAVQSDPAMMRGTIRLETSTGWIEH HHHHHHHHHHHCCCCCCEEEECCCCCEEEECCCEEEEECCCCHHHEEEEEEECCCCHHHC GRAVYLDELRAALGEGTAT CCCHHHHHHHHHHCCCCCC >Mature Secondary Structure SDLAAETGFAPVSLADAMARRSGFRPLSFARAAETTAPAPEPSADDSEDDPFARGLAEG CCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH QRIAEAAHTAERHQLLALLASAEALQDEPSEELAQLIAETVERLVRQIVAAAPIDAEWLR HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH RQAETAAALVADADKARTLWVHPDDAALLADCPLTLAVQSDPAMMRGTIRLETSTGWIEH HHHHHHHHHHHCCCCCCEEEECCCCCEEEECCCEEEEECCCCHHHEEEEEEECCCCHHHC GRAVYLDELRAALGEGTAT CCCHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA