Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103488411

Identifier: 103488411

GI number: 103488411

Start: 3078723

End: 3079322

Strand: Reverse

Name: 103488411

Synonym: Sala_2934

Alternate gene names: NA

Gene position: 3079322-3078723 (Counterclockwise)

Preceding gene: 103488412

Following gene: 103488410

Centisome position: 92.05

GC content: 71.5

Gene sequence:

>600_bases
ATGTCTGACCTCGCCGCCGAAACGGGCTTTGCCCCTGTCAGCCTGGCCGACGCGATGGCGCGGCGCAGCGGCTTTCGCCC
GCTGTCCTTCGCCCGCGCCGCTGAAACCACGGCGCCCGCGCCCGAACCGTCGGCCGATGACAGCGAGGACGATCCCTTCG
CGCGCGGCCTCGCCGAAGGACAGCGTATCGCCGAAGCGGCCCACACCGCCGAACGGCACCAGCTGCTCGCGCTGCTTGCG
AGCGCCGAGGCGTTGCAGGACGAGCCGAGCGAGGAACTGGCGCAGCTGATCGCCGAAACGGTCGAGCGGCTGGTGCGCCA
GATCGTCGCCGCCGCCCCGATCGACGCCGAATGGCTGCGTCGGCAGGCCGAAACCGCTGCGGCATTGGTCGCCGACGCCG
ACAAGGCGCGCACCCTGTGGGTGCATCCCGACGATGCCGCGCTGCTCGCCGATTGCCCGCTGACGCTCGCCGTCCAGAGC
GACCCCGCGATGATGCGCGGCACCATCCGCCTCGAAACCTCGACCGGCTGGATCGAGCATGGCCGCGCCGTCTATCTCGA
CGAACTGCGCGCCGCGCTCGGCGAAGGCACCGCCACATGA

Upstream 100 bases:

>100_bases
AAGCGCGCCGACGTCGAGGATGCGCAAAAGAGCGTGATGCAGATCGTCCGCCAGATGGCGGCGAATGGCGAAATCATGAT
CGCGGGCGGGGGCGACGATT

Downstream 100 bases:

>100_bases
CGCGCCGCCTCACCCTGTCGGCCCAGCAGTTGCTCGGCGGCATCGACCTCGCCGACGCCAGCCCGCGCCGCATCGGCACG
CTCGTCGCGCACGAGGGGAT

Product: flagellar biosynthetic protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 199; Mature: 198

Protein sequence:

>199_residues
MSDLAAETGFAPVSLADAMARRSGFRPLSFARAAETTAPAPEPSADDSEDDPFARGLAEGQRIAEAAHTAERHQLLALLA
SAEALQDEPSEELAQLIAETVERLVRQIVAAAPIDAEWLRRQAETAAALVADADKARTLWVHPDDAALLADCPLTLAVQS
DPAMMRGTIRLETSTGWIEHGRAVYLDELRAALGEGTAT

Sequences:

>Translated_199_residues
MSDLAAETGFAPVSLADAMARRSGFRPLSFARAAETTAPAPEPSADDSEDDPFARGLAEGQRIAEAAHTAERHQLLALLA
SAEALQDEPSEELAQLIAETVERLVRQIVAAAPIDAEWLRRQAETAAALVADADKARTLWVHPDDAALLADCPLTLAVQS
DPAMMRGTIRLETSTGWIEHGRAVYLDELRAALGEGTAT
>Mature_198_residues
SDLAAETGFAPVSLADAMARRSGFRPLSFARAAETTAPAPEPSADDSEDDPFARGLAEGQRIAEAAHTAERHQLLALLAS
AEALQDEPSEELAQLIAETVERLVRQIVAAAPIDAEWLRRQAETAAALVADADKARTLWVHPDDAALLADCPLTLAVQSD
PAMMRGTIRLETSTGWIEHGRAVYLDELRAALGEGTAT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21178; Mature: 21047

Theoretical pI: Translated: 4.23; Mature: 4.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLAAETGFAPVSLADAMARRSGFRPLSFARAAETTAPAPEPSADDSEDDPFARGLAEG
CCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
QRIAEAAHTAERHQLLALLASAEALQDEPSEELAQLIAETVERLVRQIVAAAPIDAEWLR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
RQAETAAALVADADKARTLWVHPDDAALLADCPLTLAVQSDPAMMRGTIRLETSTGWIEH
HHHHHHHHHHHCCCCCCEEEECCCCCEEEECCCEEEEECCCCHHHEEEEEEECCCCHHHC
GRAVYLDELRAALGEGTAT
CCCHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SDLAAETGFAPVSLADAMARRSGFRPLSFARAAETTAPAPEPSADDSEDDPFARGLAEG
CCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
QRIAEAAHTAERHQLLALLASAEALQDEPSEELAQLIAETVERLVRQIVAAAPIDAEWLR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
RQAETAAALVADADKARTLWVHPDDAALLADCPLTLAVQSDPAMMRGTIRLETSTGWIEH
HHHHHHHHHHHCCCCCCEEEECCCCCEEEECCCEEEEECCCCHHHEEEEEEECCCCHHHC
GRAVYLDELRAALGEGTAT
CCCHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA