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The map label for this gene is fliR [H]

Identifier: 103488401

GI number: 103488401

Start: 3071715

End: 3072494

Strand: Reverse

Name: fliR [H]

Synonym: Sala_2924

Alternate gene names: 103488401

Gene position: 3072494-3071715 (Counterclockwise)

Preceding gene: 103488402

Following gene: 103488400

Centisome position: 91.85

GC content: 69.49

Gene sequence:

>780_bases
ATGAACCCCGCCGACATCCCCAATGTCGAGGCGATGCTCCAGCTGTGGATGCTGGGGATGATCCGCCCCGGCGCCGCCTT
CATCGCCGCACCCGTGTTCGGCGCCGCCAATGTGCCGGTGCAGCTCAGGCTTGTCATCGCGCTTGCGGTCGGCGTGCCCG
CGGTCGCGGCGTCGGGCATGGTGCTGCCCGCCGAAGGGATCGTGTCGGTGCCGGGCATCTTCTTCATCGTCGGCGAGGTG
GTGATCGGTCTCGCGATCGGCTTCGTGCTCCAGATGGGGCTCGCCGCCGCGCTGCTCGCGGGCGAAGTCATCAGCAATGC
GATGGGCCTCGGCTTCGCGTCGATGGTCGATCCCTTGAGCGGCGCGTCGAGTTCGGCGATCGGCCAGTTCCTCGCGATGC
TCGCGACCGCGCTCTTTCTCGCCGCCGACGGCCACCTCCTCCTCATCGACATCGTCGTGGACAGCTACACCGCCCTCCCC
CCCGGCAACGCCTTTCCGTCGTGGGACGCGCTCGGCGGCGTCATCCGCTTCGGCAGCCTGATGTTCGCCGCCGCGCTGAC
GATCGCGCTGCCCGTCGGTTTCGTGCTGATCCTCGTCCAGATCATCATGGGCGTGATCGGCCGCTCGGCGCCCGCGCTCA
ACCTGTTCGCGGTCGGCATCCCCGCGACGCTGCTCGCCGGCATCGTCCTGCTGGGCGTCGCGACGCCCGCGATGGCCGAA
GCGATCATCCGCATCCTGTCCGACGCGCTCGACGCCGCGCGCATGGTCGCAGGCGTCTGA

Upstream 100 bases:

>100_bases
GCGATCTGCCTCGCGATCTTCGGCGGCAGCATCCTCGTCCTGCTCACCGATTTCACGCGCGACCTGTTCGCGCAGATTCC
GGCACTCGTCCGCTAGGACA

Downstream 100 bases:

>100_bases
GCCATGGCAGAGGGCCCCGACAAGGACCAGAAGACCGAACAGCCGACGGCGAAGAAGCGCGCCGATTCGACGCGCGAGGG
CGATGTGCTGATGTCGCGCG

Product: flagellar biosynthetic protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MNPADIPNVEAMLQLWMLGMIRPGAAFIAAPVFGAANVPVQLRLVIALAVGVPAVAASGMVLPAEGIVSVPGIFFIVGEV
VIGLAIGFVLQMGLAAALLAGEVISNAMGLGFASMVDPLSGASSSAIGQFLAMLATALFLAADGHLLLIDIVVDSYTALP
PGNAFPSWDALGGVIRFGSLMFAAALTIALPVGFVLILVQIIMGVIGRSAPALNLFAVGIPATLLAGIVLLGVATPAMAE
AIIRILSDALDAARMVAGV

Sequences:

>Translated_259_residues
MNPADIPNVEAMLQLWMLGMIRPGAAFIAAPVFGAANVPVQLRLVIALAVGVPAVAASGMVLPAEGIVSVPGIFFIVGEV
VIGLAIGFVLQMGLAAALLAGEVISNAMGLGFASMVDPLSGASSSAIGQFLAMLATALFLAADGHLLLIDIVVDSYTALP
PGNAFPSWDALGGVIRFGSLMFAAALTIALPVGFVLILVQIIMGVIGRSAPALNLFAVGIPATLLAGIVLLGVATPAMAE
AIIRILSDALDAARMVAGV
>Mature_259_residues
MNPADIPNVEAMLQLWMLGMIRPGAAFIAAPVFGAANVPVQLRLVIALAVGVPAVAASGMVLPAEGIVSVPGIFFIVGEV
VIGLAIGFVLQMGLAAALLAGEVISNAMGLGFASMVDPLSGASSSAIGQFLAMLATALFLAADGHLLLIDIVVDSYTALP
PGNAFPSWDALGGVIRFGSLMFAAALTIALPVGFVLILVQIIMGVIGRSAPALNLFAVGIPATLLAGIVLLGVATPAMAE
AIIRILSDALDAARMVAGV

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=243, Percent_Identity=33.3333333333333, Blast_Score=105, Evalue=4e-24,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 26004; Mature: 26004

Theoretical pI: Translated: 4.08; Mature: 4.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPADIPNVEAMLQLWMLGMIRPGAAFIAAPVFGAANVPVQLRLVIALAVGVPAVAASGM
CCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC
VLPAEGIVSVPGIFFIVGEVVIGLAIGFVLQMGLAAALLAGEVISNAMGLGFASMVDPLS
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCC
GASSSAIGQFLAMLATALFLAADGHLLLIDIVVDSYTALPPGNAFPSWDALGGVIRFGSL
CCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
MFAAALTIALPVGFVLILVQIIMGVIGRSAPALNLFAVGIPATLLAGIVLLGVATPAMAE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHH
AIIRILSDALDAARMVAGV
HHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNPADIPNVEAMLQLWMLGMIRPGAAFIAAPVFGAANVPVQLRLVIALAVGVPAVAASGM
CCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC
VLPAEGIVSVPGIFFIVGEVVIGLAIGFVLQMGLAAALLAGEVISNAMGLGFASMVDPLS
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCC
GASSSAIGQFLAMLATALFLAADGHLLLIDIVVDSYTALPPGNAFPSWDALGGVIRFGSL
CCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
MFAAALTIALPVGFVLILVQIIMGVIGRSAPALNLFAVGIPATLLAGIVLLGVATPAMAE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHH
AIIRILSDALDAARMVAGV
HHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8412685; 7934865 [H]