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The map label for this gene is ntrC [H]

Identifier: 103488397

GI number: 103488397

Start: 3067483

End: 3068550

Strand: Direct

Name: ntrC [H]

Synonym: Sala_2920

Alternate gene names: 103488397

Gene position: 3067483-3068550 (Clockwise)

Preceding gene: 103488396

Following gene: 103488415

Centisome position: 91.7

GC content: 66.29

Gene sequence:

>1068_bases
ATGACTGTGGGGCACAATAATCAGCCGACGCTCGAAGCATTGATCATCGGGACCAGCGAAGGCGCGGTCCGGCTGCGCGA
CATGATCCGCCGGGTGGCGCGGTCGAACGCCTCGGTGATGCTCTGCGGCCCCTCGGGATCGGGCAAGGAACTGGTGGCCC
GCGCGATCCACGACGAAGGCACCCGTGCGGGCAAGGCTTTTTCGGCGATCAACTGTGGCGCGATCCCCGGCGAACTCATT
GAATCCGAACTTTTCGGGCATGAAAAGGGCAGCTTCACCGGCGCCCACGCCCGCCGCATCGGCCATTTCGAGGCCAGCGA
AGGCGGCACCATCTTCCTCGACGAAATCGGCGACATGCGCTTCGACATGCAGGTCAAGCTGCTCCGGGTGCTCGAAGACC
GTACGATCGTGCGCGTCGGATCGAGCGAGGTGAAGCCGGTCGACGTGCGGGTCATTTCGGCGACCCACCAGGATCTCGGC
GCCGCAATCGCCGAAGGCAAGTTCCGCGAAGACCTGTTCTTCCGGCTCGGCGTGGTTGTGCTCCAGGTCCCCAGCCTGGC
GAGCCGCGCCGAGGATATTCCCGCGCTCATCCGCCATTTCCAGCGCAAGATGCCGGTCGATGCCAAATGCCGCTTCGACG
CCGGCGCCATGGCGATGCTGATGCAGCATCGCTGGCCCGGCAATGTGCGCGAACTCAGAAACTTCGTCGAGCGCGCCAGC
GTCCTCCACGGGGGCGAGACGCTCGACGCGCAGGACGTGGCGATGCTCCTGAACCCCACCGCGACGCCTGCTCCGCGGCC
CGCTGTCCCCGGCGGCATCGCCGCGGTGCAGGCCAGCGCGGACGATCGCCCTGTGCCGCAGCCCGCGGCGGCGGTTGCCA
AGACGCCAGCGCCGGGCCGCCCGATTGACCTCAAGCGCGAGATCGAGACGATCGAACTCGAACAGATCCACGTCGCGCTC
GATCTCGCCGACGGCATCATTTCGGAAGCCGCGCGCCTCCTGACGCTGAAGCGCACAACGCTGATCGAAAAGATGCGCAA
ATATGGGGTTCACCAGCAGGCCGCCTGA

Upstream 100 bases:

>100_bases
GAATGGGTTATACGATCACGGATAAGCTTTTGTTTACCAGTTTCATCAATTTCTGAAGCCATCGAAGGGGCGCCGGGCGG
GCGGCGCGATGGAGACCAGA

Downstream 100 bases:

>100_bases
CGGCTCGCCCGAAACAGGTTTCAGCACCCGCTGAAAAAGGGAGCTCTGGTCCGCTCCCGAACCCACCCGGCCGCCCGTCC
CCACCCAGGGCGGCCGGGTA

Product: sigma-54 dependent trancsriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 355; Mature: 354

Protein sequence:

>355_residues
MTVGHNNQPTLEALIIGTSEGAVRLRDMIRRVARSNASVMLCGPSGSGKELVARAIHDEGTRAGKAFSAINCGAIPGELI
ESELFGHEKGSFTGAHARRIGHFEASEGGTIFLDEIGDMRFDMQVKLLRVLEDRTIVRVGSSEVKPVDVRVISATHQDLG
AAIAEGKFREDLFFRLGVVVLQVPSLASRAEDIPALIRHFQRKMPVDAKCRFDAGAMAMLMQHRWPGNVRELRNFVERAS
VLHGGETLDAQDVAMLLNPTATPAPRPAVPGGIAAVQASADDRPVPQPAAAVAKTPAPGRPIDLKREIETIELEQIHVAL
DLADGIISEAARLLTLKRTTLIEKMRKYGVHQQAA

Sequences:

>Translated_355_residues
MTVGHNNQPTLEALIIGTSEGAVRLRDMIRRVARSNASVMLCGPSGSGKELVARAIHDEGTRAGKAFSAINCGAIPGELI
ESELFGHEKGSFTGAHARRIGHFEASEGGTIFLDEIGDMRFDMQVKLLRVLEDRTIVRVGSSEVKPVDVRVISATHQDLG
AAIAEGKFREDLFFRLGVVVLQVPSLASRAEDIPALIRHFQRKMPVDAKCRFDAGAMAMLMQHRWPGNVRELRNFVERAS
VLHGGETLDAQDVAMLLNPTATPAPRPAVPGGIAAVQASADDRPVPQPAAAVAKTPAPGRPIDLKREIETIELEQIHVAL
DLADGIISEAARLLTLKRTTLIEKMRKYGVHQQAA
>Mature_354_residues
TVGHNNQPTLEALIIGTSEGAVRLRDMIRRVARSNASVMLCGPSGSGKELVARAIHDEGTRAGKAFSAINCGAIPGELIE
SELFGHEKGSFTGAHARRIGHFEASEGGTIFLDEIGDMRFDMQVKLLRVLEDRTIVRVGSSEVKPVDVRVISATHQDLGA
AIAEGKFREDLFFRLGVVVLQVPSLASRAEDIPALIRHFQRKMPVDAKCRFDAGAMAMLMQHRWPGNVRELRNFVERASV
LHGGETLDAQDVAMLLNPTATPAPRPAVPGGIAAVQASADDRPVPQPAAAVAKTPAPGRPIDLKREIETIELEQIHVALD
LADGIISEAARLLTLKRTTLIEKMRKYGVHQQAA

Specific function: Member of the two-component regulatory system ntrB/ntrC involved in the activation of nitrogen assimilatory genes such as glnA. NtrC is phosphorylated by ntrB and interacts with sigma-54 [H]

COG id: COG2204

COG function: function code T; Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1790437, Length=337, Percent_Identity=43.026706231454, Blast_Score=244, Evalue=8e-66,
Organism=Escherichia coli, GI1790299, Length=349, Percent_Identity=42.6934097421203, Blast_Score=236, Evalue=1e-63,
Organism=Escherichia coli, GI1788905, Length=231, Percent_Identity=51.5151515151515, Blast_Score=232, Evalue=3e-62,
Organism=Escherichia coli, GI87082117, Length=342, Percent_Identity=40.6432748538012, Blast_Score=231, Evalue=5e-62,
Organism=Escherichia coli, GI1788550, Length=323, Percent_Identity=40.5572755417957, Blast_Score=231, Evalue=7e-62,
Organism=Escherichia coli, GI1789087, Length=360, Percent_Identity=36.9444444444444, Blast_Score=220, Evalue=9e-59,
Organism=Escherichia coli, GI1789233, Length=249, Percent_Identity=47.3895582329317, Blast_Score=214, Evalue=6e-57,
Organism=Escherichia coli, GI1786524, Length=280, Percent_Identity=43.5714285714286, Blast_Score=202, Evalue=3e-53,
Organism=Escherichia coli, GI87082152, Length=231, Percent_Identity=45.021645021645, Blast_Score=191, Evalue=6e-50,
Organism=Escherichia coli, GI87081872, Length=341, Percent_Identity=34.3108504398827, Blast_Score=182, Evalue=3e-47,
Organism=Escherichia coli, GI1787583, Length=244, Percent_Identity=38.1147540983607, Blast_Score=165, Evalue=5e-42,
Organism=Escherichia coli, GI1789828, Length=240, Percent_Identity=37.5, Blast_Score=137, Evalue=2e-33,
Organism=Escherichia coli, GI87081858, Length=329, Percent_Identity=28.2674772036474, Blast_Score=131, Evalue=5e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR011006
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR002078
- InterPro:   IPR010114
- InterPro:   IPR001789 [H]

Pfam domain/function: PF02954 HTH_8; PF00072 Response_reg; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 38394; Mature: 38263

Theoretical pI: Translated: 7.75; Mature: 7.75

Prosite motif: PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVGHNNQPTLEALIIGTSEGAVRLRDMIRRVARSNASVMLCGPSGSGKELVARAIHDEG
CCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCC
TRAGKAFSAINCGAIPGELIESELFGHEKGSFTGAHARRIGHFEASEGGTIFLDEIGDMR
CCCCCHHCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHCCEECCCCCEEEEECCCCCE
FDMQVKLLRVLEDRTIVRVGSSEVKPVDVRVISATHQDLGAAIAEGKFREDLFFRLGVVV
EHHHHHHHHHHCCCEEEEECCCCCCEEEEEEEECCHHHHHHHHHCCCHHHHHHHHHHHHH
LQVPSLASRAEDIPALIRHFQRKMPVDAKCRFDAGAMAMLMQHRWPGNVRELRNFVERAS
HHCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHH
VLHGGETLDAQDVAMLLNPTATPAPRPAVPGGIAAVQASADDRPVPQPAAAVAKTPAPGR
HHCCCCCCCHHHHHEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHCCCCCCC
PIDLKREIETIELEQIHVALDLADGIISEAARLLTLKRTTLIEKMRKYGVHQQAA
CCCHHHHHCEEEHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TVGHNNQPTLEALIIGTSEGAVRLRDMIRRVARSNASVMLCGPSGSGKELVARAIHDEG
CCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCC
TRAGKAFSAINCGAIPGELIESELFGHEKGSFTGAHARRIGHFEASEGGTIFLDEIGDMR
CCCCCHHCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHCCEECCCCCEEEEECCCCCE
FDMQVKLLRVLEDRTIVRVGSSEVKPVDVRVISATHQDLGAAIAEGKFREDLFFRLGVVV
EHHHHHHHHHHCCCEEEEECCCCCCEEEEEEEECCHHHHHHHHHCCCHHHHHHHHHHHHH
LQVPSLASRAEDIPALIRHFQRKMPVDAKCRFDAGAMAMLMQHRWPGNVRELRNFVERAS
HHCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHH
VLHGGETLDAQDVAMLLNPTATPAPRPAVPGGIAAVQASADDRPVPQPAAAVAKTPAPGR
HHCCCCCCCHHHHHEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHCCCCCCC
PIDLKREIETIELEQIHVALDLADGIISEAARLLTLKRTTLIEKMRKYGVHQQAA
CCCHHHHHCEEEHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2881918; 11481430; 8478331 [H]